RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 DAAM1Q9Y4D1 1078 aa12.65□□□□□ -0.38
LDLR-212ENST00000560467 ZFP37Q9Y6Q3 630 aaPredicted RBP12.65□□□□□ -0.38
LDLR-212ENST00000560467 TPRP12270 2363 aaKnown RBP12.65□□□□□ -0.38
LDLR-212ENST00000560467 KANSL1LA0AUZ9 987 aa12.64□□□□□ -0.39
LDLR-212ENST00000560467 RECQL4O94761 1208 aa12.64□□□□□ -0.39
LDLR-212ENST00000560467 HNRNPA1P09651 372 aaKnown RBP eCLIP12.64□□□□□ -0.39
LDLR-212ENST00000560467 IGFBP6P24592 240 aaPredicted RBP12.64□□□□□ -0.39
LDLR-212ENST00000560467 GRM5P41594 1212 aa12.64□□□□□ -0.39
LDLR-212ENST00000560467 FMO5P49326 533 aa12.64□□□□□ -0.39
LDLR-212ENST00000560467 MXI1P50539 228 aa12.64□□□□□ -0.39
LDLR-212ENST00000560467 OSTNP61366 133 aa12.64□□□□□ -0.39
LDLR-212ENST00000560467 BIRC3Q13489 604 aa12.64□□□□□ -0.39
LDLR-212ENST00000560467 TRPC3Q13507 836 aa12.64□□□□□ -0.39
LDLR-212ENST00000560467 UBXN2BQ14CS0 331 aa12.64□□□□□ -0.39
LDLR-212ENST00000560467 SYCP1Q15431 976 aa12.64□□□□□ -0.39
LDLR-212ENST00000560467 MLF2Q15773 248 aaPredicted RBP12.64□□□□□ -0.39
LDLR-212ENST00000560467 NT5DC4Q86YG4 428 aa12.64□□□□□ -0.39
LDLR-212ENST00000560467 WDR49Q8IV35 697 aa12.64□□□□□ -0.39
LDLR-212ENST00000560467 CNGA4Q8IV77 575 aa12.64□□□□□ -0.39
LDLR-212ENST00000560467 BRSK2Q8IWQ3 736 aa12.64□□□□□ -0.39
LDLR-212ENST00000560467 SLC7A14Q8TBB6 771 aa12.64□□□□□ -0.39
LDLR-212ENST00000560467 PARD3BQ8TEW8 1205 aa12.64□□□□□ -0.39
LDLR-212ENST00000560467 ING5Q8WYH8 240 aa12.64□□□□□ -0.39
LDLR-212ENST00000560467 SHDQ96IW2 340 aa12.64□□□□□ -0.39
LDLR-212ENST00000560467 ANKRD36BP1Q96IX9 119 aa12.64□□□□□ -0.39
LDLR-212ENST00000560467 ERGIC2Q96RQ1 377 aa12.64□□□□□ -0.39
LDLR-212ENST00000560467 PPP1R9BQ96SB3 815 aa12.64□□□□□ -0.39
LDLR-212ENST00000560467 DDX23Q9BUQ8 820 aaKnown RBP12.64□□□□□ -0.39
LDLR-212ENST00000560467 NUCKS1Q9H1E3 243 aaKnown RBP12.64□□□□□ -0.39
LDLR-212ENST00000560467 ASB7Q9H672 318 aa12.64□□□□□ -0.39
LDLR-212ENST00000560467 TMEM8AQ9HCN3 771 aa12.64□□□□□ -0.39
LDLR-212ENST00000560467 SPATA6Q9NWH7 488 aaPredicted RBP12.64□□□□□ -0.39
LDLR-212ENST00000560467 HCFC1R1Q9NWW0 138 aa12.64□□□□□ -0.39
LDLR-212ENST00000560467 SNTG2Q9NY99 539 aa12.64□□□□□ -0.39
LDLR-212ENST00000560467 CPSF3Q9UKF6 684 aaKnown RBP12.64□□□□□ -0.39
LDLR-212ENST00000560467 ITIH6Q6UXX5 1313 aa12.63□□□□□ -0.39
LDLR-212ENST00000560467 FRYLO94915 3013 aa12.63□□□□□ -0.39
LDLR-212ENST00000560467 ARID2Q68CP9 1835 aa12.63□□□□□ -0.39
LDLR-212ENST00000560467 TEX33O43247 280 aa12.63□□□□□ -0.39
LDLR-212ENST00000560467 EDN1P05305 212 aa12.63□□□□□ -0.39
LDLR-212ENST00000560467 TMEM191BP0C7N4 346 aa12.63□□□□□ -0.39
LDLR-212ENST00000560467 TRIM49P0CI25 452 aa12.63□□□□□ -0.39
LDLR-212ENST00000560467 TRIM49CP0CI26 452 aa12.63□□□□□ -0.39
LDLR-212ENST00000560467 CD72P21854 359 aa12.63□□□□□ -0.39
LDLR-212ENST00000560467 TFAMQ00059 246 aaKnown RBP12.63□□□□□ -0.39
LDLR-212ENST00000560467 PUM1Q14671 1186 aaKnown RBP eCLIP12.63□□□□□ -0.39
LDLR-212ENST00000560467 NAB2Q15742 525 aa12.63□□□□□ -0.39
LDLR-212ENST00000560467 SLC44A4Q53GD3 710 aa12.63□□□□□ -0.39
LDLR-212ENST00000560467 MIIPQ5JXC2 388 aa12.63□□□□□ -0.39
LDLR-212ENST00000560467 EEF1DP3Q658K8 133 aa12.63□□□□□ -0.39
LDLR-212ENST00000560467 MTSS1LQ765P7 747 aa12.63□□□□□ -0.39
LDLR-212ENST00000560467 APTXQ7Z2E3 356 aaKnown RBP12.63□□□□□ -0.39
LDLR-212ENST00000560467 NPAS3Q8IXF0 933 aa12.63□□□□□ -0.39
LDLR-212ENST00000560467 BORCS6Q96GS4 357 aa12.63□□□□□ -0.39
LDLR-212ENST00000560467 CGRRF1Q99675 332 aa12.63□□□□□ -0.39
LDLR-212ENST00000560467 BCO2Q9BYV7 579 aa12.63□□□□□ -0.39
LDLR-212ENST00000560467 EDEM3Q9BZQ6 932 aa12.63□□□□□ -0.39
LDLR-212ENST00000560467 LUC7L2Q9Y383 392 aaKnown RBP12.63□□□□□ -0.39
LDLR-212ENST00000560467 CACNA1IQ9P0X4 2223 aa12.63□□□□□ -0.39
LDLR-212ENST00000560467 FAM170BA6NMN3 283 aa12.62□□□□□ -0.39
LDLR-212ENST00000560467 AKR1B15C9JRZ8 316 aaPredicted RBP12.62□□□□□ -0.39
LDLR-212ENST00000560467 PMM2O15305 246 aa12.62□□□□□ -0.39
LDLR-212ENST00000560467 AP5Z1O43299 807 aa12.62□□□□□ -0.39
LDLR-212ENST00000560467 LAMTOR5O43504 91 aa12.62□□□□□ -0.39
LDLR-212ENST00000560467 XYLBO75191 536 aa12.62□□□□□ -0.39
LDLR-212ENST00000560467 CCDC172P0C7W6 258 aa12.62□□□□□ -0.39
LDLR-212ENST00000560467 HOXA9P31269 272 aa12.62□□□□□ -0.39
LDLR-212ENST00000560467 GCLMP48507 274 aa12.62□□□□□ -0.39
LDLR-212ENST00000560467 CSTF1Q05048 431 aaKnown RBP12.62□□□□□ -0.39
LDLR-212ENST00000560467 PABPC1LQ4VXU2 614 aaKnown RBP12.62□□□□□ -0.39
LDLR-212ENST00000560467 RSPO2Q6UXX9 243 aaPredicted RBP12.62□□□□□ -0.39
LDLR-212ENST00000560467 FBXL13Q8NEE6 735 aa12.62□□□□□ -0.39
LDLR-212ENST00000560467 CPLX3Q8WVH0 158 aa12.62□□□□□ -0.39
LDLR-212ENST00000560467 PDLIM2Q96JY6 352 aa12.62□□□□□ -0.39
LDLR-212ENST00000560467 CRACR2AQ9BSW2 395 aa12.62□□□□□ -0.39
LDLR-212ENST00000560467 DNAI2Q9GZS0 605 aa12.62□□□□□ -0.39
LDLR-212ENST00000560467 PDE11AQ9HCR9 933 aa12.62□□□□□ -0.39
LDLR-212ENST00000560467 LTB4R2Q9NPC1 389 aa12.62□□□□□ -0.39
LDLR-212ENST00000560467 FAM207AQ9NSI2 230 aaPredicted RBP12.62□□□□□ -0.39
LDLR-212ENST00000560467 DLL3Q9NYJ7 618 aa12.62□□□□□ -0.39
LDLR-212ENST00000560467 GCNT4Q9P109 453 aa12.62□□□□□ -0.39
LDLR-212ENST00000560467 DNMT3BQ9UBC3 853 aaKnown RBP12.62□□□□□ -0.39
LDLR-212ENST00000560467 DERAQ9Y315 318 aa12.62□□□□□ -0.39
LDLR-212ENST00000560467 MYH11P35749 1972 aa12.61□□□□□ -0.39
LDLR-212ENST00000560467 CACNA1BQ00975 2339 aa12.61□□□□□ -0.39
LDLR-212ENST00000560467 THP07101 528 aa12.61□□□□□ -0.39
LDLR-212ENST00000560467 ADRB2P07550 413 aa12.61□□□□□ -0.39
LDLR-212ENST00000560467 P4HA1P13674 534 aa12.61□□□□□ -0.39
LDLR-212ENST00000560467 TARSP26639 723 aaKnown RBP12.61□□□□□ -0.39
LDLR-212ENST00000560467 OR1D2P34982 312 aa12.61□□□□□ -0.39
LDLR-212ENST00000560467 PRKCQQ04759 706 aa12.61□□□□□ -0.39
LDLR-212ENST00000560467 ELAVL2Q12926 359 aaKnown RBP12.61□□□□□ -0.39
LDLR-212ENST00000560467 RAB33AQ14088 237 aa12.61□□□□□ -0.39
LDLR-212ENST00000560467 TMEM132DQ14C87 1099 aa12.61□□□□□ -0.39
LDLR-212ENST00000560467 ENOX2Q16206 610 aaKnown RBP12.61□□□□□ -0.39
LDLR-212ENST00000560467 RSPO4Q2I0M5 234 aaPredicted RBP12.61□□□□□ -0.39
LDLR-212ENST00000560467 SLC5A9Q2M3M2 681 aa12.61□□□□□ -0.39
LDLR-212ENST00000560467 SEZ6Q53EL9 994 aa12.61□□□□□ -0.39
LDLR-212ENST00000560467 FIGNQ5HY92 759 aa12.61□□□□□ -0.39
LDLR-212ENST00000560467 GLRA4Q5JXX5 417 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms