RNA–Protein interactions for RNA: ENST00000560299.1

SPG11-221, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 437 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-221ENST00000560299 HESX1Q9UBX0 185 aa6.84□□□□□ -1.31
SPG11-221ENST00000560299 NAGPAQ9UK23 515 aa6.84□□□□□ -1.31
SPG11-221ENST00000560299 PCDHA13Q9Y5I0 950 aa6.84□□□□□ -1.31
SPG11-221ENST00000560299 ANKRD62A6NC57 917 aa6.83□□□□□ -1.32
SPG11-221ENST00000560299 M0QZQ0 153 aa6.83□□□□□ -1.32
SPG11-221ENST00000560299 DDX3XO00571 662 aaKnown RBP eCLIP6.83□□□□□ -1.32
SPG11-221ENST00000560299 NRP1O14786 923 aa6.83□□□□□ -1.32
SPG11-221ENST00000560299 PPEF2O14830 753 aa6.83□□□□□ -1.32
SPG11-221ENST00000560299 SYN3O14994 580 aa6.83□□□□□ -1.32
SPG11-221ENST00000560299 KIF5CO60282 957 aa6.83□□□□□ -1.32
SPG11-221ENST00000560299 DDHD2O94830 711 aa6.83□□□□□ -1.32
SPG11-221ENST00000560299 FTLP02792 175 aaPredicted RBP6.83□□□□□ -1.32
SPG11-221ENST00000560299 MMEP08473 750 aa6.83□□□□□ -1.32
SPG11-221ENST00000560299 MYBL1P10243 752 aa6.83□□□□□ -1.32
SPG11-221ENST00000560299 TYMPP19971 482 aa6.83□□□□□ -1.32
SPG11-221ENST00000560299 NSFP46459 744 aaKnown RBP6.83□□□□□ -1.32
SPG11-221ENST00000560299 RAP1GAPP47736 663 aa6.83□□□□□ -1.32
SPG11-221ENST00000560299 RAD23BP54727 409 aa6.83□□□□□ -1.32
SPG11-221ENST00000560299 NAP1L1P55209 391 aaKnown RBP6.83□□□□□ -1.32
SPG11-221ENST00000560299 FMO1Q01740 532 aa6.83□□□□□ -1.32
SPG11-221ENST00000560299 UBE3AQ05086 875 aa6.83□□□□□ -1.32
SPG11-221ENST00000560299 TIGD5Q53EQ6 642 aa6.83□□□□□ -1.32
SPG11-221ENST00000560299 DNTTIP2Q5QJE6 756 aaKnown RBP6.83□□□□□ -1.32
SPG11-221ENST00000560299 ZNF697Q5TEC3 545 aa6.83□□□□□ -1.32
SPG11-221ENST00000560299 SCARA3Q6AZY7 606 aa6.83□□□□□ -1.32
SPG11-221ENST00000560299 PDE12Q6L8Q7 609 aaKnown RBP6.83□□□□□ -1.32
SPG11-221ENST00000560299 LIN28BQ6ZN17 250 aaKnown RBP eCLIP6.83□□□□□ -1.32
SPG11-221ENST00000560299 LIMS2Q7Z4I7 341 aa6.83□□□□□ -1.32
SPG11-221ENST00000560299 ZNF280BQ86YH2 543 aa6.83□□□□□ -1.32
SPG11-221ENST00000560299 GPIHBP1Q8IV16 184 aa6.83□□□□□ -1.32
SPG11-221ENST00000560299 CRYBG2Q8N1P7 616 aa6.83□□□□□ -1.32
SPG11-221ENST00000560299 PDCL2Q8N4E4 241 aa6.83□□□□□ -1.32
SPG11-221ENST00000560299 RNF10Q8N5U6 811 aaKnown RBP6.83□□□□□ -1.32
SPG11-221ENST00000560299 SLC4A11Q8NBS3 891 aa6.83□□□□□ -1.32
SPG11-221ENST00000560299 ACRBPQ8NEB7 543 aa6.83□□□□□ -1.32
SPG11-221ENST00000560299 DDX1Q92499 740 aaKnown RBP6.83□□□□□ -1.32
SPG11-221ENST00000560299 VCPIP1Q96JH7 1222 aa6.83□□□□□ -1.32
SPG11-221ENST00000560299 SUSD3Q96L08 255 aa6.83□□□□□ -1.32
SPG11-221ENST00000560299 YME1L1Q96TA2 773 aa6.83□□□□□ -1.32
SPG11-221ENST00000560299 OXCT2Q9BYC2 517 aaPredicted RBP6.83□□□□□ -1.32
SPG11-221ENST00000560299 LHX5Q9H2C1 402 aa6.83□□□□□ -1.32
SPG11-221ENST00000560299 ZNF576Q9H609 170 aa6.83□□□□□ -1.32
SPG11-221ENST00000560299 NRDE2Q9H7Z3 1164 aa6.83□□□□□ -1.32
SPG11-221ENST00000560299 LZTFL1Q9NQ48 299 aa6.83□□□□□ -1.32
SPG11-221ENST00000560299 MTMR10Q9NXD2 777 aa6.83□□□□□ -1.32
SPG11-221ENST00000560299 DDX43Q9NXZ2 648 aaKnown RBP6.83□□□□□ -1.32
SPG11-221ENST00000560299 NOCTQ9UK39 431 aaKnown RBP6.83□□□□□ -1.32
SPG11-221ENST00000560299 ADAM28Q9UKQ2 775 aa6.83□□□□□ -1.32
SPG11-221ENST00000560299 CDH9Q9ULB4 789 aa6.83□□□□□ -1.32
SPG11-221ENST00000560299 PCDHGC3Q9UN70 934 aa6.83□□□□□ -1.32
SPG11-221ENST00000560299 L1RE1Q9UN81 338 aa6.83□□□□□ -1.32
SPG11-221ENST00000560299 LZTS1Q9Y250 596 aa6.83□□□□□ -1.32
SPG11-221ENST00000560299 STXBP5LQ9Y2K9 1186 aa6.83□□□□□ -1.32
SPG11-221ENST00000560299 SF3B1O75533 1304 aaKnown RBP eCLIP6.82□□□□□ -1.32
SPG11-221ENST00000560299 BTNL10A8MVZ5 291 aa6.82□□□□□ -1.32
SPG11-221ENST00000560299 TMCO5BA8MYB1 307 aa6.82□□□□□ -1.32
SPG11-221ENST00000560299 H7C4K7 107 aa6.82□□□□□ -1.32
SPG11-221ENST00000560299 SOX1O00570 391 aaPredicted RBP6.82□□□□□ -1.32
SPG11-221ENST00000560299 GABRDO14764 452 aa6.82□□□□□ -1.32
SPG11-221ENST00000560299 SPTLC1O15269 473 aa6.82□□□□□ -1.32
SPG11-221ENST00000560299 PJA2O43164 708 aa6.82□□□□□ -1.32
SPG11-221ENST00000560299 NCK2O43639 380 aa6.82□□□□□ -1.32
SPG11-221ENST00000560299 TLL1O43897 1013 aa6.82□□□□□ -1.32
SPG11-221ENST00000560299 CYP11A1P05108 521 aa6.82□□□□□ -1.32
SPG11-221ENST00000560299 CALB1P05937 261 aa6.82□□□□□ -1.32
SPG11-221ENST00000560299 GALTP07902 379 aa6.82□□□□□ -1.32
SPG11-221ENST00000560299 PDGFRBP09619 1106 aa6.82□□□□□ -1.32
SPG11-221ENST00000560299 TMEM253P0C7T8 217 aa6.82□□□□□ -1.32
SPG11-221ENST00000560299 LINC00271P0C7V0 271 aa6.82□□□□□ -1.32
SPG11-221ENST00000560299 CHRNB2P17787 502 aa6.82□□□□□ -1.32
SPG11-221ENST00000560299 PTPN1P18031 435 aaKnown RBP6.82□□□□□ -1.32
SPG11-221ENST00000560299 LAG3P18627 525 aa6.82□□□□□ -1.32
SPG11-221ENST00000560299 BRD2P25440 801 aaKnown RBP6.82□□□□□ -1.32
SPG11-221ENST00000560299 GPC5P78333 572 aa6.82□□□□□ -1.32
SPG11-221ENST00000560299 TSPY1Q01534 308 aa6.82□□□□□ -1.32
SPG11-221ENST00000560299 TAP1Q03518 808 aa6.82□□□□□ -1.32
SPG11-221ENST00000560299 YWHAHQ04917 246 aaPredicted RBP6.82□□□□□ -1.32
SPG11-221ENST00000560299 BTG3Q14201 252 aaPredicted RBP6.82□□□□□ -1.32
SPG11-221ENST00000560299 COL19A1Q14993 1142 aa6.82□□□□□ -1.32
SPG11-221ENST00000560299 CLEC16AQ2KHT3 1053 aa6.82□□□□□ -1.32
SPG11-221ENST00000560299 TCTN1Q2MV58 587 aa6.82□□□□□ -1.32
SPG11-221ENST00000560299 PAN2Q504Q3 1202 aaKnown RBP6.82□□□□□ -1.32
SPG11-221ENST00000560299 ARSIQ5FYB1 569 aa6.82□□□□□ -1.32
SPG11-221ENST00000560299 LIN9Q5TKA1 542 aa6.82□□□□□ -1.32
SPG11-221ENST00000560299 WSCD1Q658N2 575 aa6.82□□□□□ -1.32
SPG11-221ENST00000560299 OVOS1Q6IE37 1185 aa6.82□□□□□ -1.32
SPG11-221ENST00000560299 ACAD10Q6JQN1 1059 aa6.82□□□□□ -1.32
SPG11-221ENST00000560299 LCLAT1Q6UWP7 414 aa6.82□□□□□ -1.32
SPG11-221ENST00000560299 ACOT1Q86TX2 421 aa6.82□□□□□ -1.32
SPG11-221ENST00000560299 ERICH1Q86X53 443 aa6.82□□□□□ -1.32
SPG11-221ENST00000560299 REXO1L1PQ8IX06 675 aa6.82□□□□□ -1.32
SPG11-221ENST00000560299 RHOT2Q8IXI1 618 aa6.82□□□□□ -1.32
SPG11-221ENST00000560299 DCP1BQ8IZD4 617 aaKnown RBP6.82□□□□□ -1.32
SPG11-221ENST00000560299 B3GALNT2Q8NCR0 500 aa6.82□□□□□ -1.32
SPG11-221ENST00000560299 LNX1Q8TBB1 728 aaPredicted RBP6.82□□□□□ -1.32
SPG11-221ENST00000560299 WHAMMQ8TF30 809 aa6.82□□□□□ -1.32
SPG11-221ENST00000560299 HASPINQ8TF76 798 aa6.82□□□□□ -1.32
SPG11-221ENST00000560299 SLC20A1Q8WUM9 679 aa6.82□□□□□ -1.32
SPG11-221ENST00000560299 UBE2Q2Q8WVN8 375 aa6.82□□□□□ -1.32
SPG11-221ENST00000560299 SECISBP2LQ93073 1101 aaKnown RBP6.82□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms