RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 TLR5O60602 858 aa5.92□□□□□ -1.46
VPS13C-208ENST00000559119 CCND1P24385 295 aa5.92□□□□□ -1.46
VPS13C-208ENST00000559119 CYP2C18P33260 490 aa5.92□□□□□ -1.46
VPS13C-208ENST00000559119 TOB1P50616 345 aaPredicted RBP5.92□□□□□ -1.46
VPS13C-208ENST00000559119 EEFSECP57772 596 aaKnown RBP5.92□□□□□ -1.46
VPS13C-208ENST00000559119 TCF15Q12870 199 aa5.92□□□□□ -1.46
VPS13C-208ENST00000559119 PTPN21Q16825 1174 aa5.92□□□□□ -1.46
VPS13C-208ENST00000559119 SFRP4Q6FHJ7 346 aaPredicted RBP5.92□□□□□ -1.46
VPS13C-208ENST00000559119 SLC18B1Q6NT16 456 aa5.92□□□□□ -1.46
VPS13C-208ENST00000559119 TMEM108Q6UXF1 575 aa5.92□□□□□ -1.46
VPS13C-208ENST00000559119 PPP1R32Q7Z5V6 425 aa5.92□□□□□ -1.46
VPS13C-208ENST00000559119 DTX2Q86UW9 622 aa5.92□□□□□ -1.46
VPS13C-208ENST00000559119 CPA6Q8N4T0 437 aa5.92□□□□□ -1.46
VPS13C-208ENST00000559119 TISP43B9A030 160 aa5.91□□□□□ -1.46
VPS13C-208ENST00000559119 H0YIZ8 118 aa5.91□□□□□ -1.46
VPS13C-208ENST00000559119 SLC16A6O15403 523 aa5.91□□□□□ -1.46
VPS13C-208ENST00000559119 SLC16A3O15427 465 aaKnown RBP5.91□□□□□ -1.46
VPS13C-208ENST00000559119 DTNBO60941 627 aa5.91□□□□□ -1.46
VPS13C-208ENST00000559119 PCID2Q5JVF3 399 aa5.91□□□□□ -1.46
VPS13C-208ENST00000559119 ICE2Q659A1 982 aa5.91□□□□□ -1.46
VPS13C-208ENST00000559119 WDR53Q7Z5U6 358 aaPredicted RBP5.91□□□□□ -1.46
VPS13C-208ENST00000559119 FAM46DQ8NEK8 389 aa5.91□□□□□ -1.46
VPS13C-208ENST00000559119 PUS7Q96PZ0 661 aaKnown RBP5.91□□□□□ -1.46
VPS13C-208ENST00000559119 SH2D3AQ9BRG2 576 aa5.91□□□□□ -1.46
VPS13C-208ENST00000559119 QTRT1Q9BXR0 403 aaKnown RBP5.91□□□□□ -1.46
VPS13C-208ENST00000559119 ABCF2Q9UG63 623 aa5.91□□□□□ -1.46
VPS13C-208ENST00000559119 ZNF213O14771 459 aa5.9□□□□□ -1.46
VPS13C-208ENST00000559119 KATNA1O75449 491 aa5.9□□□□□ -1.46
VPS13C-208ENST00000559119 ONECUT2O95948 504 aa5.9□□□□□ -1.46
VPS13C-208ENST00000559119 TUBB4AP04350 444 aa5.9□□□□□ -1.46
VPS13C-208ENST00000559119 NHLRC4P0CG21 123 aaPredicted RBP5.9□□□□□ -1.46
VPS13C-208ENST00000559119 CDK11BP21127 795 aaKnown RBP5.9□□□□□ -1.46
VPS13C-208ENST00000559119 NOGQ13253 232 aa5.9□□□□□ -1.46
VPS13C-208ENST00000559119 ODF1Q14990 250 aa5.9□□□□□ -1.46
VPS13C-208ENST00000559119 SUPT20HL1Q3ZLR7 823 aa5.9□□□□□ -1.46
VPS13C-208ENST00000559119 CEP78Q5JTW2 689 aa5.9□□□□□ -1.46
VPS13C-208ENST00000559119 TREML2Q5T2D2 321 aa5.9□□□□□ -1.46
VPS13C-208ENST00000559119 FAM160B1Q5W0V3 765 aa5.9□□□□□ -1.46
VPS13C-208ENST00000559119 LAYNQ6UX15 382 aa5.9□□□□□ -1.46
VPS13C-208ENST00000559119 HEATR3Q7Z4Q2 680 aa5.9□□□□□ -1.46
VPS13C-208ENST00000559119 ZNF48Q96MX3 618 aaPredicted RBP5.9□□□□□ -1.46
VPS13C-208ENST00000559119 ST6GALNAC1Q9NSC7 600 aaPredicted RBP5.9□□□□□ -1.46
VPS13C-208ENST00000559119 DLL3Q9NYJ7 618 aa5.9□□□□□ -1.46
VPS13C-208ENST00000559119 PRRT4C9JH25 899 aa5.89□□□□□ -1.47
VPS13C-208ENST00000559119 MOSPD3O75425 235 aa5.89□□□□□ -1.47
VPS13C-208ENST00000559119 LIPAP38571 399 aa5.89□□□□□ -1.47
VPS13C-208ENST00000559119 CLCN2P51788 898 aa5.89□□□□□ -1.47
VPS13C-208ENST00000559119 BOP1Q14137 746 aaKnown RBP5.89□□□□□ -1.47
VPS13C-208ENST00000559119 MAVSQ7Z434 540 aa5.89□□□□□ -1.47
VPS13C-208ENST00000559119 LRRC71Q8N4P6 559 aa5.89□□□□□ -1.47
VPS13C-208ENST00000559119 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP5.89□□□□□ -1.47
VPS13C-208ENST00000559119 RGMAQ96B86 450 aa5.89□□□□□ -1.47
VPS13C-208ENST00000559119 SLC46A1Q96NT5 459 aa5.89□□□□□ -1.47
VPS13C-208ENST00000559119 SLC13A1Q9BZW2 595 aa5.89□□□□□ -1.47
VPS13C-208ENST00000559119 TTYH3Q9C0H2 523 aa5.89□□□□□ -1.47
VPS13C-208ENST00000559119 MRPL46Q9H2W6 279 aaKnown RBP5.89□□□□□ -1.47
VPS13C-208ENST00000559119 SH2B3Q9UQQ2 575 aa5.89□□□□□ -1.47
VPS13C-208ENST00000559119 DNAJB5O75953 348 aa5.88□□□□□ -1.47
VPS13C-208ENST00000559119 FTLP02792 175 aaPredicted RBP5.88□□□□□ -1.47
VPS13C-208ENST00000559119 IL6RP08887 468 aaPredicted RBP5.88□□□□□ -1.47
VPS13C-208ENST00000559119 ENGP17813 658 aa5.88□□□□□ -1.47
VPS13C-208ENST00000559119 MMP13P45452 471 aa5.88□□□□□ -1.47
VPS13C-208ENST00000559119 CCT4P50991 539 aaKnown RBP5.88□□□□□ -1.47
VPS13C-208ENST00000559119 PDE1AP54750 535 aa5.88□□□□□ -1.47
VPS13C-208ENST00000559119 FAM50AQ14320 339 aaKnown RBP5.88□□□□□ -1.47
VPS13C-208ENST00000559119 RNF187Q5TA31 235 aaPredicted RBP5.88□□□□□ -1.47
VPS13C-208ENST00000559119 NAPRTQ6XQN6 538 aa5.88□□□□□ -1.47
VPS13C-208ENST00000559119 DUSP22Q9NRW4 184 aa5.88□□□□□ -1.47
VPS13C-208ENST00000559119 MYO1FO00160 1098 aa5.87□□□□□ -1.47
VPS13C-208ENST00000559119 PIM1P11309 404 aaPredicted RBP5.87□□□□□ -1.47
VPS13C-208ENST00000559119 PDCP20941 246 aa5.87□□□□□ -1.47
VPS13C-208ENST00000559119 CDKN1CP49918 316 aaPredicted RBP5.87□□□□□ -1.47
VPS13C-208ENST00000559119 ZNF134P52741 427 aa5.87□□□□□ -1.47
VPS13C-208ENST00000559119 HK3P52790 923 aa5.87□□□□□ -1.47
VPS13C-208ENST00000559119 HOXA4Q00056 320 aaPredicted RBP5.87□□□□□ -1.47
VPS13C-208ENST00000559119 LONRF3Q496Y0 759 aa5.87□□□□□ -1.47
VPS13C-208ENST00000559119 SLC2A7Q6PXP3 512 aa5.87□□□□□ -1.47
VPS13C-208ENST00000559119 PNLDC1Q8NA58 520 aaKnown RBP5.87□□□□□ -1.47
VPS13C-208ENST00000559119 FAM167AQ96KS9 214 aa5.87□□□□□ -1.47
VPS13C-208ENST00000559119 LMBRD1Q9NUN5 540 aa5.87□□□□□ -1.47
VPS13C-208ENST00000559119 SERTAD3Q9UJW9 196 aa5.87□□□□□ -1.47
VPS13C-208ENST00000559119 TNKSO95271 1327 aa5.86□□□□□ -1.47
VPS13C-208ENST00000559119 PPEF2O14830 753 aa5.86□□□□□ -1.47
VPS13C-208ENST00000559119 AHSGP02765 367 aa5.86□□□□□ -1.47
VPS13C-208ENST00000559119 NPSP0C0P6 89 aa5.86□□□□□ -1.47
VPS13C-208ENST00000559119 ATXN1LP0C7T5 689 aaKnown RBP5.86□□□□□ -1.47
VPS13C-208ENST00000559119 PXNP49023 591 aaPredicted RBP5.86□□□□□ -1.47
VPS13C-208ENST00000559119 LOXL3P58215 753 aa5.86□□□□□ -1.47
VPS13C-208ENST00000559119 CYP4F2P78329 520 aa5.86□□□□□ -1.47
VPS13C-208ENST00000559119 ARHGAP40Q5TG30 622 aa5.86□□□□□ -1.47
VPS13C-208ENST00000559119 CATSPERGQ6ZRH7 1159 aa5.86□□□□□ -1.47
VPS13C-208ENST00000559119 PPP1R3BQ86XI6 285 aa5.86□□□□□ -1.47
VPS13C-208ENST00000559119 CNGA4Q8IV77 575 aa5.86□□□□□ -1.47
VPS13C-208ENST00000559119 GLOD4Q9HC38 313 aa5.86□□□□□ -1.47
VPS13C-208ENST00000559119 ANLNQ9NQW6 1124 aa5.86□□□□□ -1.47
VPS13C-208ENST00000559119 HESX1Q9UBX0 185 aa5.86□□□□□ -1.47
VPS13C-208ENST00000559119 CCNL1Q9UK58 526 aaPredicted RBP5.86□□□□□ -1.47
VPS13C-208ENST00000559119 PCDHA1Q9Y5I3 950 aa5.86□□□□□ -1.47
VPS13C-208ENST00000559119 FNDC1Q4ZHG4 1894 aaPredicted RBP5.85□□□□□ -1.47
VPS13C-208ENST00000559119 KCNU1A8MYU2 1149 aa5.85□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms