RNA–Protein interactions for RNA: ENST00000558285.5

USP3-208, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best) BASIC

Gene USP3, Length 1,742 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-208ENST00000558285 CDH9Q9ULB4 789 aa9.28□□□□□ -0.92
USP3-208ENST00000558285 MTMR11A4FU01 709 aa9.27□□□□□ -0.93
USP3-208ENST00000558285 DPYSL4O14531 572 aa9.27□□□□□ -0.93
USP3-208ENST00000558285 TACC1O75410 805 aa9.27□□□□□ -0.93
USP3-208ENST00000558285 CSH1P0DML2 217 aa9.27□□□□□ -0.93
USP3-208ENST00000558285 CSH2P0DML3 217 aa9.27□□□□□ -0.93
USP3-208ENST00000558285 SRFP11831 508 aa9.27□□□□□ -0.93
USP3-208ENST00000558285 MYL4P12829 197 aa9.27□□□□□ -0.93
USP3-208ENST00000558285 DDX6P26196 483 aaKnown RBP eCLIP9.27□□□□□ -0.93
USP3-208ENST00000558285 CASP1P29466 404 aa9.27□□□□□ -0.93
USP3-208ENST00000558285 VAMP7P51809 220 aa9.27□□□□□ -0.93
USP3-208ENST00000558285 FKBP3Q00688 224 aaKnown RBP9.27□□□□□ -0.93
USP3-208ENST00000558285 DUSP4Q13115 394 aa9.27□□□□□ -0.93
USP3-208ENST00000558285 WDR72Q3MJ13 1102 aa9.27□□□□□ -0.93
USP3-208ENST00000558285 COBLL1Q53SF7 1204 aa9.27□□□□□ -0.93
USP3-208ENST00000558285 VSTM1Q6UX27 236 aa9.27□□□□□ -0.93
USP3-208ENST00000558285 RNF19BQ6ZMZ0 732 aa9.27□□□□□ -0.93
USP3-208ENST00000558285 CREBRFQ8IUR6 639 aa9.27□□□□□ -0.93
USP3-208ENST00000558285 PDCL2Q8N4E4 241 aa9.27□□□□□ -0.93
USP3-208ENST00000558285 TRIML1Q8N9V2 468 aa9.27□□□□□ -0.93
USP3-208ENST00000558285 KIAA0895Q8NCT3 520 aa9.27□□□□□ -0.93
USP3-208ENST00000558285 FGF13Q92913 245 aa9.27□□□□□ -0.93
USP3-208ENST00000558285 DHTKD1Q96HY7 919 aaPredicted RBP9.27□□□□□ -0.93
USP3-208ENST00000558285 FAXDC2Q96IV6 333 aa9.27□□□□□ -0.93
USP3-208ENST00000558285 PGLYRP2Q96PD5 576 aa9.27□□□□□ -0.93
USP3-208ENST00000558285 LRFN3Q9BTN0 628 aa9.27□□□□□ -0.93
USP3-208ENST00000558285 FGFBP2Q9BYJ0 223 aa9.27□□□□□ -0.93
USP3-208ENST00000558285 FAM124BQ9H5Z6 455 aaPredicted RBP9.27□□□□□ -0.93
USP3-208ENST00000558285 ZFP14Q9HCL3 533 aa9.27□□□□□ -0.93
USP3-208ENST00000558285 ABI2Q9NYB9 513 aaPredicted RBP9.27□□□□□ -0.93
USP3-208ENST00000558285 WNT16Q9UBV4 365 aa9.27□□□□□ -0.93
USP3-208ENST00000558285 DUSP12Q9UNI6 340 aa9.27□□□□□ -0.93
USP3-208ENST00000558285 MRPS17Q9Y2R5 130 aaKnown RBP9.27□□□□□ -0.93
USP3-208ENST00000558285 CDH23Q9H251 3354 aa9.27□□□□□ -0.93
USP3-208ENST00000558285 SPTLC1O15269 473 aa9.26□□□□□ -0.93
USP3-208ENST00000558285 SLC16A3O15427 465 aaKnown RBP9.26□□□□□ -0.93
USP3-208ENST00000558285 N4BP1O75113 896 aaKnown RBP9.26□□□□□ -0.93
USP3-208ENST00000558285 ECI2O75521 394 aa9.26□□□□□ -0.93
USP3-208ENST00000558285 GNA14O95837 355 aa9.26□□□□□ -0.93
USP3-208ENST00000558285 WARSP23381 471 aaKnown RBP9.26□□□□□ -0.93
USP3-208ENST00000558285 HOXD13P35453 343 aa9.26□□□□□ -0.93
USP3-208ENST00000558285 GNL1P36915 607 aaPredicted RBP9.26□□□□□ -0.93
USP3-208ENST00000558285 PIK3CAP42336 1068 aa9.26□□□□□ -0.93
USP3-208ENST00000558285 YWHAEP62258 255 aaKnown RBP9.26□□□□□ -0.93
USP3-208ENST00000558285 GABPB1Q06547 395 aaPredicted RBP9.26□□□□□ -0.93
USP3-208ENST00000558285 NCOA4Q13772 614 aa9.26□□□□□ -0.93
USP3-208ENST00000558285 WDR44Q5JSH3 913 aa9.26□□□□□ -0.93
USP3-208ENST00000558285 INTS6LQ5JSJ4 861 aaKnown RBP9.26□□□□□ -0.93
USP3-208ENST00000558285 RSPO2Q6UXX9 243 aaPredicted RBP9.26□□□□□ -0.93
USP3-208ENST00000558285 FBXL6Q8N531 539 aa9.26□□□□□ -0.93
USP3-208ENST00000558285 GLIS3Q8NEA6 775 aa9.26□□□□□ -0.93
USP3-208ENST00000558285 OR6B3Q8NGW1 331 aa9.26□□□□□ -0.93
USP3-208ENST00000558285 PARD3BQ8TEW8 1205 aa9.26□□□□□ -0.93
USP3-208ENST00000558285 DEPDC1BQ8WUY9 529 aa9.26□□□□□ -0.93
USP3-208ENST00000558285 PSMG2Q969U7 264 aa9.26□□□□□ -0.93
USP3-208ENST00000558285 RTP3Q9BQQ7 232 aa9.26□□□□□ -0.93
USP3-208ENST00000558285 KCTD10Q9H3F6 313 aa9.26□□□□□ -0.93
USP3-208ENST00000558285 GOLPH3LQ9H4A5 285 aa9.26□□□□□ -0.93
USP3-208ENST00000558285 DMAC2Q9NW81 257 aa9.26□□□□□ -0.93
USP3-208ENST00000558285 THG1LQ9NWX6 298 aaKnown RBP9.26□□□□□ -0.93
USP3-208ENST00000558285 DNMT3BQ9UBC3 853 aaKnown RBP9.26□□□□□ -0.93
USP3-208ENST00000558285 MAGEC2Q9UBF1 373 aaPredicted RBP9.26□□□□□ -0.93
USP3-208ENST00000558285 DACH1Q9UI36 760 aa9.26□□□□□ -0.93
USP3-208ENST00000558285 CCDC66A2RUB6 948 aa9.25□□□□□ -0.93
USP3-208ENST00000558285 PPEF2O14830 753 aa9.25□□□□□ -0.93
USP3-208ENST00000558285 NCAM2O15394 837 aa9.25□□□□□ -0.93
USP3-208ENST00000558285 MAP3K13O43283 966 aa9.25□□□□□ -0.93
USP3-208ENST00000558285 MAGEA11P43364 429 aa9.25□□□□□ -0.93
USP3-208ENST00000558285 PPP3CCP48454 512 aa9.25□□□□□ -0.93
USP3-208ENST00000558285 EPHA5P54756 1037 aa9.25□□□□□ -0.93
USP3-208ENST00000558285 CLDN10P78369 228 aa9.25□□□□□ -0.93
USP3-208ENST00000558285 AMPD2Q01433 879 aa9.25□□□□□ -0.93
USP3-208ENST00000558285 PNOCQ13519 176 aa9.25□□□□□ -0.93
USP3-208ENST00000558285 CAMK2BQ13554 666 aa9.25□□□□□ -0.93
USP3-208ENST00000558285 CFAP221Q4G0U5 840 aa9.25□□□□□ -0.93
USP3-208ENST00000558285 FOXR2Q6PJQ5 311 aa9.25□□□□□ -0.93
USP3-208ENST00000558285 MRPS31Q92665 395 aaKnown RBP9.25□□□□□ -0.93
USP3-208ENST00000558285 SMARCD2Q92925 531 aa9.25□□□□□ -0.93
USP3-208ENST00000558285 ELSPBP1Q96BH3 223 aa9.25□□□□□ -0.93
USP3-208ENST00000558285 MSANTD3Q96H12 275 aa9.25□□□□□ -0.93
USP3-208ENST00000558285 NELL2Q99435 816 aa9.25□□□□□ -0.93
USP3-208ENST00000558285 SYT15Q9BQS2 421 aa9.25□□□□□ -0.93
USP3-208ENST00000558285 ELOVL4Q9GZR5 314 aa9.25□□□□□ -0.93
USP3-208ENST00000558285 VRTNQ9H8Y1 702 aa9.25□□□□□ -0.93
USP3-208ENST00000558285 SLC2A4RGQ9NR83 387 aa9.25□□□□□ -0.93
USP3-208ENST00000558285 NXF1Q9UBU9 619 aaKnown RBP9.25□□□□□ -0.93
USP3-208ENST00000558285 L1RE1Q9UN81 338 aa9.25□□□□□ -0.93
USP3-208ENST00000558285 PDCD11Q14690 1871 aaKnown RBP9.25□□□□□ -0.93
USP3-208ENST00000558285 A8MXQ7 604 aa9.25□□□□□ -0.93
USP3-208ENST00000558285 ANHXE9PGG2 379 aa9.25□□□□□ -0.93
USP3-208ENST00000558285 SEC24AO95486 1093 aa9.25□□□□□ -0.93
USP3-208ENST00000558285 HAPLN1P10915 354 aaPredicted RBP9.25□□□□□ -0.93
USP3-208ENST00000558285 SLC8A3P57103 927 aa9.25□□□□□ -0.93
USP3-208ENST00000558285 HTR4Q13639 388 aa9.25□□□□□ -0.93
USP3-208ENST00000558285 LMBRD2Q68DH5 695 aaPredicted RBP9.25□□□□□ -0.93
USP3-208ENST00000558285 KRT39Q6A163 491 aa9.25□□□□□ -0.93
USP3-208ENST00000558285 DNAJB7Q7Z6W7 309 aaPredicted RBP9.25□□□□□ -0.93
USP3-208ENST00000558285 NPAS3Q8IXF0 933 aa9.25□□□□□ -0.93
USP3-208ENST00000558285 ATAD1Q8NBU5 361 aa9.25□□□□□ -0.93
USP3-208ENST00000558285 OR5B17Q8NGF7 314 aa9.25□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms