RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-223	ENST00000557005	RASGEF1C	Q8N431	466 aa		5.21	□□□□□ -1.58
SYNE2-223	ENST00000557005	LRRN4	Q8WUT4	740 aa		5.21	□□□□□ -1.58
SYNE2-223	ENST00000557005	MARK4	Q96L34	752 aa		5.21	□□□□□ -1.58
SYNE2-223	ENST00000557005	TRAPPC9	Q96Q05	1148 aa		5.21	□□□□□ -1.58
SYNE2-223	ENST00000557005	GPATCH2L	Q9NWQ4	482 aa		5.21	□□□□□ -1.58
SYNE2-223	ENST00000557005	AJAP1	Q9UKB5	411 aa	Predicted RBP	5.21	□□□□□ -1.58
SYNE2-223	ENST00000557005	ORC6	Q9Y5N6	252 aa		5.21	□□□□□ -1.58
SYNE2-223	ENST00000557005	TMEM150B	A6NC51	233 aa		5.21	□□□□□ -1.58
SYNE2-223	ENST00000557005		E9PBE3	544 aa		5.21	□□□□□ -1.58
SYNE2-223	ENST00000557005	FAM86B1	E9PN63	330 aa		5.21	□□□□□ -1.58
SYNE2-223	ENST00000557005	POLRMT	O00411	1230 aa	Known RBP	5.21	□□□□□ -1.58
SYNE2-223	ENST00000557005	KLHL41	O60662	606 aa		5.21	□□□□□ -1.58
SYNE2-223	ENST00000557005	FAM86B2	P0C5J1	330 aa		5.21	□□□□□ -1.58
SYNE2-223	ENST00000557005	ANPEP	P15144	967 aa		5.21	□□□□□ -1.58
SYNE2-223	ENST00000557005	MMP13	P45452	471 aa		5.21	□□□□□ -1.58
SYNE2-223	ENST00000557005	SLC1A6	P48664	564 aa		5.21	□□□□□ -1.58
SYNE2-223	ENST00000557005	HDAC4	P56524	1084 aa		5.21	□□□□□ -1.58
SYNE2-223	ENST00000557005	NME5	P56597	212 aa		5.21	□□□□□ -1.58
SYNE2-223	ENST00000557005	TSPY1	Q01534	308 aa		5.21	□□□□□ -1.58
SYNE2-223	ENST00000557005	PPAT	Q06203	517 aa		5.21	□□□□□ -1.58
SYNE2-223	ENST00000557005	TBL3	Q12788	808 aa	Known RBP	5.21	□□□□□ -1.58
SYNE2-223	ENST00000557005	ACAP1	Q15027	740 aa		5.21	□□□□□ -1.58
SYNE2-223	ENST00000557005	ZNF568	Q3ZCX4	644 aa		5.21	□□□□□ -1.58
SYNE2-223	ENST00000557005	CEP55	Q53EZ4	464 aa		5.21	□□□□□ -1.58
SYNE2-223	ENST00000557005	RABGAP1L	Q5R372	815 aa		5.21	□□□□□ -1.58
SYNE2-223	ENST00000557005	LAYN	Q6UX15	382 aa		5.21	□□□□□ -1.58
SYNE2-223	ENST00000557005	DDIAS	Q8IXT1	998 aa		5.21	□□□□□ -1.58
SYNE2-223	ENST00000557005	NIM1K	Q8IY84	436 aa		5.21	□□□□□ -1.58
SYNE2-223	ENST00000557005	TDRD5	Q8NAT2	981 aa	Known RBP	5.21	□□□□□ -1.58
SYNE2-223	ENST00000557005	OR6B3	Q8NGW1	331 aa		5.21	□□□□□ -1.58
SYNE2-223	ENST00000557005	NCLN	Q969V3	563 aa		5.21	□□□□□ -1.58
SYNE2-223	ENST00000557005	OSBPL7	Q9BZF2	842 aa		5.21	□□□□□ -1.58
SYNE2-223	ENST00000557005	OLFML3	Q9NRN5	406 aa		5.21	□□□□□ -1.58
SYNE2-223	ENST00000557005	NKX1-2	Q9UD57	310 aa	Predicted RBP	5.21	□□□□□ -1.58
SYNE2-223	ENST00000557005	NARF	Q9UHQ1	456 aa		5.21	□□□□□ -1.58
SYNE2-223	ENST00000557005	TCRBV7S2A1N4T	A0A589	114 aa		5.2	□□□□□ -1.58
SYNE2-223	ENST00000557005	FCHO1	O14526	889 aa		5.2	□□□□□ -1.58
SYNE2-223	ENST00000557005	KIAA0391	O15091	583 aa	Known RBP	5.2	□□□□□ -1.58
SYNE2-223	ENST00000557005	TBX3	O15119	743 aa		5.2	□□□□□ -1.58
SYNE2-223	ENST00000557005	TYK2	P29597	1187 aa		5.2	□□□□□ -1.58
SYNE2-223	ENST00000557005	GNL1	P36915	607 aa	Predicted RBP	5.2	□□□□□ -1.58
SYNE2-223	ENST00000557005	NCKAP1L	P55160	1127 aa		5.2	□□□□□ -1.58
SYNE2-223	ENST00000557005	OTUD4	Q01804	1114 aa	Known RBP	5.2	□□□□□ -1.58
SYNE2-223	ENST00000557005	CUL2	Q13617	745 aa		5.2	□□□□□ -1.58
SYNE2-223	ENST00000557005	PIGH	Q14442	188 aa	Predicted RBP	5.2	□□□□□ -1.58
SYNE2-223	ENST00000557005	OASL	Q15646	514 aa	Known RBP	5.2	□□□□□ -1.58
SYNE2-223	ENST00000557005	IRGC	Q6NXR0	463 aa		5.2	□□□□□ -1.58
SYNE2-223	ENST00000557005	NPNT	Q6UXI9	565 aa		5.2	□□□□□ -1.58
SYNE2-223	ENST00000557005	ZNF572	Q7Z3I7	529 aa	Predicted RBP	5.2	□□□□□ -1.58
SYNE2-223	ENST00000557005	LDHD	Q86WU2	507 aa		5.2	□□□□□ -1.58
SYNE2-223	ENST00000557005	NUP93	Q8N1F7	819 aa		5.2	□□□□□ -1.58
SYNE2-223	ENST00000557005	TBC1D16	Q8TBP0	767 aa		5.2	□□□□□ -1.58
SYNE2-223	ENST00000557005	MAGEC3	Q8TD91	643 aa		5.2	□□□□□ -1.58
SYNE2-223	ENST00000557005	EME1	Q96AY2	570 aa		5.2	□□□□□ -1.58
SYNE2-223	ENST00000557005	RMDN3	Q96TC7	470 aa		5.2	□□□□□ -1.58
SYNE2-223	ENST00000557005	UNK	Q9C0B0	810 aa	Known RBP	5.2	□□□□□ -1.58
SYNE2-223	ENST00000557005	GRIP2	Q9C0E4	1043 aa		5.2	□□□□□ -1.58
SYNE2-223	ENST00000557005	UPF3A	Q9H1J1	476 aa	Known RBP	5.2	□□□□□ -1.58
SYNE2-223	ENST00000557005	RNPEPL1	Q9HAU8	725 aa		5.2	□□□□□ -1.58
SYNE2-223	ENST00000557005	KIAA1586	Q9HCI6	787 aa		5.2	□□□□□ -1.58
SYNE2-223	ENST00000557005	FAM49B	Q9NUQ9	324 aa		5.2	□□□□□ -1.58
SYNE2-223	ENST00000557005	PIH1D1	Q9NWS0	290 aa	Known RBP	5.2	□□□□□ -1.58
SYNE2-223	ENST00000557005	ZNF212	Q9UDV6	495 aa		5.2	□□□□□ -1.58
SYNE2-223	ENST00000557005	WARS2	Q9UGM6	360 aa	Known RBP	5.2	□□□□□ -1.58
SYNE2-223	ENST00000557005	SCAF8	Q9UPN6	1271 aa	Known RBP	5.2	□□□□□ -1.58
SYNE2-223	ENST00000557005	RPTOR	Q8N122	1335 aa		5.2	□□□□□ -1.58
SYNE2-223	ENST00000557005	NID2	Q14112	1375 aa		5.2	□□□□□ -1.58
SYNE2-223	ENST00000557005		A0A1W2PPM1	405 aa		5.2	□□□□□ -1.58
SYNE2-223	ENST00000557005	HNRNPR	O43390	633 aa	Known RBP	5.2	□□□□□ -1.58
SYNE2-223	ENST00000557005	MGRN1	O60291	552 aa		5.2	□□□□□ -1.58
SYNE2-223	ENST00000557005	CST8	O60676	142 aa		5.2	□□□□□ -1.58
SYNE2-223	ENST00000557005	CYP1A2	P05177	515 aa		5.2	□□□□□ -1.58
SYNE2-223	ENST00000557005	ADRA1D	P25100	572 aa		5.2	□□□□□ -1.58
SYNE2-223	ENST00000557005	RPL10A	P62906	217 aa	Known RBP	5.2	□□□□□ -1.58
SYNE2-223	ENST00000557005	FASTKD1	Q53R41	847 aa	Known RBP	5.2	□□□□□ -1.58
SYNE2-223	ENST00000557005	ZNF667	Q5HYK9	610 aa		5.2	□□□□□ -1.58
SYNE2-223	ENST00000557005	WLS	Q5T9L3	541 aa		5.2	□□□□□ -1.58
SYNE2-223	ENST00000557005	ARMC3	Q5W041	872 aa		5.2	□□□□□ -1.58
SYNE2-223	ENST00000557005	TXNRD3	Q86VQ6	643 aa		5.2	□□□□□ -1.58
SYNE2-223	ENST00000557005	SPATA18	Q8TC71	538 aa		5.2	□□□□□ -1.58
SYNE2-223	ENST00000557005	VPS50	Q96JG6	964 aa		5.2	□□□□□ -1.58
SYNE2-223	ENST00000557005	ZNF570	Q96NI8	536 aa		5.2	□□□□□ -1.58
SYNE2-223	ENST00000557005	AGAP3	Q96P47	875 aa		5.2	□□□□□ -1.58
SYNE2-223	ENST00000557005	ECSIT	Q9BQ95	431 aa		5.2	□□□□□ -1.58
SYNE2-223	ENST00000557005	MMTAG2	Q9BU76	263 aa	Known RBP	5.2	□□□□□ -1.58
SYNE2-223	ENST00000557005	CCDC90B	Q9GZT6	254 aa		5.2	□□□□□ -1.58
SYNE2-223	ENST00000557005	ASCC2	Q9H1I8	757 aa	Predicted RBP	5.2	□□□□□ -1.58
SYNE2-223	ENST00000557005	KCTD10	Q9H3F6	313 aa		5.2	□□□□□ -1.58
SYNE2-223	ENST00000557005	FAM96A	Q9H5X1	160 aa		5.2	□□□□□ -1.58
SYNE2-223	ENST00000557005	TASP1	Q9H6P5	420 aa		5.2	□□□□□ -1.58
SYNE2-223	ENST00000557005	CAAP1	Q9H8G2	361 aa		5.2	□□□□□ -1.58
SYNE2-223	ENST00000557005	ARL8B	Q9NVJ2	186 aa		5.2	□□□□□ -1.58
SYNE2-223	ENST00000557005	IPO11	Q9UI26	975 aa	Known RBP	5.2	□□□□□ -1.58
SYNE2-223	ENST00000557005	TSC22D4	Q9Y3Q8	395 aa		5.2	□□□□□ -1.58
SYNE2-223	ENST00000557005	NUP188	Q5SRE5	1749 aa		5.2	□□□□□ -1.58
SYNE2-223	ENST00000557005	CIC	Q96RK0	1608 aa	Predicted RBP	5.2	□□□□□ -1.58
SYNE2-223	ENST00000557005	SRRM3	A6NNA2	597 aa	Predicted RBP	5.2	□□□□□ -1.58
SYNE2-223	ENST00000557005		A8MXQ7	604 aa		5.2	□□□□□ -1.58
SYNE2-223	ENST00000557005	ZMPSTE24	O75844	475 aa		5.2	□□□□□ -1.58
SYNE2-223	ENST00000557005	SNRPA	P09012	282 aa	Known RBP	5.2	□□□□□ -1.58

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