RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, human

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-223	ENST00000556689	CSH2	P0DML3	217 aa		13.66	□□□□□ -0.22
SHMT2-223	ENST00000556689	ABCD1	P33897	745 aa		13.66	□□□□□ -0.22
SHMT2-223	ENST00000556689	GJA4	P35212	333 aa		13.66	□□□□□ -0.22
SHMT2-223	ENST00000556689	ACOT2	P49753	483 aa		13.66	□□□□□ -0.22
SHMT2-223	ENST00000556689	ATP2C1	P98194	919 aa	Predicted RBP	13.66	□□□□□ -0.22
SHMT2-223	ENST00000556689	CREB5	Q02930	508 aa		13.66	□□□□□ -0.22
SHMT2-223	ENST00000556689	ZNF268	Q14587	947 aa	Predicted RBP	13.66	□□□□□ -0.22
SHMT2-223	ENST00000556689	RILPL1	Q5EBL4	403 aa		13.66	□□□□□ -0.22
SHMT2-223	ENST00000556689	DAB2IP	Q5VWQ8	1189 aa		13.66	□□□□□ -0.22
SHMT2-223	ENST00000556689	TCEAL6	Q6IPX3	200 aa		13.66	□□□□□ -0.22
SHMT2-223	ENST00000556689	RPLP0P6	Q8NHW5	317 aa		13.66	□□□□□ -0.22
SHMT2-223	ENST00000556689	TCEAL3	Q969E4	200 aa		13.66	□□□□□ -0.22
SHMT2-223	ENST00000556689	REEP2	Q9BRK0	252 aa		13.66	□□□□□ -0.22
SHMT2-223	ENST00000556689	ECT2	Q9H8V3	914 aa		13.66	□□□□□ -0.22
SHMT2-223	ENST00000556689	PARVG	Q9HBI0	331 aa		13.66	□□□□□ -0.22
SHMT2-223	ENST00000556689	DPP3	Q9NY33	737 aa		13.66	□□□□□ -0.22
SHMT2-223	ENST00000556689	EBF1	Q9UH73	591 aa		13.66	□□□□□ -0.22
SHMT2-223	ENST00000556689	MAGED2	Q9UNF1	606 aa	Predicted RBP	13.66	□□□□□ -0.22
SHMT2-223	ENST00000556689	C2CD2	Q9Y426	696 aa		13.66	□□□□□ -0.22
SHMT2-223	ENST00000556689	LAMA1	P25391	3075 aa		13.66	□□□□□ -0.22
SHMT2-223	ENST00000556689	BCLAF3	A2AJT9	711 aa	Known RBP	13.65	□□□□□ -0.22
SHMT2-223	ENST00000556689	C4orf47	A7E2U8	309 aa		13.65	□□□□□ -0.22
SHMT2-223	ENST00000556689	PRPF40A	O75400	957 aa	Known RBP	13.65	□□□□□ -0.22
SHMT2-223	ENST00000556689	DHX8	Q14562	1220 aa	Known RBP	13.65	□□□□□ -0.22
SHMT2-223	ENST00000556689	DMC1	Q14565	340 aa		13.65	□□□□□ -0.22
SHMT2-223	ENST00000556689	TMEM119	Q4V9L6	283 aa		13.65	□□□□□ -0.22
SHMT2-223	ENST00000556689	ADAL	Q6DHV7	355 aa		13.65	□□□□□ -0.22
SHMT2-223	ENST00000556689	MCTP1	Q6DN14	999 aa		13.65	□□□□□ -0.22
SHMT2-223	ENST00000556689	SLFN12L	Q6IEE8	588 aa		13.65	□□□□□ -0.22
SHMT2-223	ENST00000556689	SLC39A4	Q6P5W5	647 aa		13.65	□□□□□ -0.22
SHMT2-223	ENST00000556689	GPBP1	Q86WP2	473 aa		13.65	□□□□□ -0.22
SHMT2-223	ENST00000556689	CPA6	Q8N4T0	437 aa		13.65	□□□□□ -0.22
SHMT2-223	ENST00000556689	CD101	Q93033	1021 aa		13.65	□□□□□ -0.22
SHMT2-223	ENST00000556689	PI4K2A	Q9BTU6	479 aa		13.65	□□□□□ -0.22
SHMT2-223	ENST00000556689	EDEM2	Q9BV94	578 aa		13.65	□□□□□ -0.22
SHMT2-223	ENST00000556689	CCSER1	Q9C0I3	900 aa		13.65	□□□□□ -0.22
SHMT2-223	ENST00000556689	ZHX3	Q9H4I2	956 aa		13.65	□□□□□ -0.22
SHMT2-223	ENST00000556689	DUS2	Q9NX74	493 aa	Known RBP	13.65	□□□□□ -0.22
SHMT2-223	ENST00000556689	UXT	Q9UBK9	157 aa	Predicted RBP	13.65	□□□□□ -0.22
SHMT2-223	ENST00000556689	RALY	Q9UKM9	306 aa	Known RBP	13.65	□□□□□ -0.22
SHMT2-223	ENST00000556689	CHD8	Q9HCK8	2581 aa		13.65	□□□□□ -0.22
SHMT2-223	ENST00000556689	KPNA7	A9QM74	516 aa		13.64	□□□□□ -0.23
SHMT2-223	ENST00000556689	ANKRD63	C9JTQ0	380 aa		13.64	□□□□□ -0.23
SHMT2-223	ENST00000556689	SLC26A4	O43511	780 aa		13.64	□□□□□ -0.23
SHMT2-223	ENST00000556689	KRT18	P05783	430 aa	Known RBP	13.64	□□□□□ -0.23
SHMT2-223	ENST00000556689	GBP1	P32455	592 aa		13.64	□□□□□ -0.23
SHMT2-223	ENST00000556689	NOVA1	P51513	510 aa	Known RBP	13.64	□□□□□ -0.23
SHMT2-223	ENST00000556689	DGKE	P52429	567 aa		13.64	□□□□□ -0.23
SHMT2-223	ENST00000556689	ZNF131	P52739	623 aa		13.64	□□□□□ -0.23
SHMT2-223	ENST00000556689	GTF2B	Q00403	316 aa		13.64	□□□□□ -0.23
SHMT2-223	ENST00000556689	TSPY1	Q01534	308 aa		13.64	□□□□□ -0.23
SHMT2-223	ENST00000556689	POU5F1	Q01860	360 aa	Known RBP	13.64	□□□□□ -0.23
SHMT2-223	ENST00000556689	NR1H3	Q13133	447 aa		13.64	□□□□□ -0.23
SHMT2-223	ENST00000556689	PSMD2	Q13200	908 aa		13.64	□□□□□ -0.23
SHMT2-223	ENST00000556689	MTF1	Q14872	753 aa		13.64	□□□□□ -0.23
SHMT2-223	ENST00000556689	NFE2	Q16621	373 aa	Predicted RBP	13.64	□□□□□ -0.23
SHMT2-223	ENST00000556689	SV2C	Q496J9	727 aa		13.64	□□□□□ -0.23
SHMT2-223	ENST00000556689	ARL6IP4	Q66PJ3	421 aa	Known RBP	13.64	□□□□□ -0.23
SHMT2-223	ENST00000556689	NAIF1	Q69YI7	327 aa	Predicted RBP	13.64	□□□□□ -0.23
SHMT2-223	ENST00000556689	CCDC26	Q8TAB7	109 aa		13.64	□□□□□ -0.23
SHMT2-223	ENST00000556689	RIN3	Q8TB24	985 aa		13.64	□□□□□ -0.23
SHMT2-223	ENST00000556689	OSCP1	Q8WVF1	389 aa		13.64	□□□□□ -0.23
SHMT2-223	ENST00000556689	ACD	Q96AP0	544 aa		13.64	□□□□□ -0.23
SHMT2-223	ENST00000556689	TMLHE	Q9NVH6	421 aa		13.64	□□□□□ -0.23
SHMT2-223	ENST00000556689	AGO2	Q9UKV8	859 aa	Known RBP	13.64	□□□□□ -0.23
SHMT2-223	ENST00000556689	GREB1	Q4ZG55	1949 aa		13.63	□□□□□ -0.23
SHMT2-223	ENST00000556689	C1QTNF9B	B2RNN3	333 aa		13.63	□□□□□ -0.23
SHMT2-223	ENST00000556689	GIPC1	O14908	333 aa		13.63	□□□□□ -0.23
SHMT2-223	ENST00000556689	KHNYN	O15037	678 aa	Known RBP	13.63	□□□□□ -0.23
SHMT2-223	ENST00000556689	SEC24B	O95487	1268 aa		13.63	□□□□□ -0.23
SHMT2-223	ENST00000556689	C1QTNF9	P0C862	333 aa		13.63	□□□□□ -0.23
SHMT2-223	ENST00000556689	UBA7	P41226	1012 aa		13.63	□□□□□ -0.23
SHMT2-223	ENST00000556689	GPR15	P49685	360 aa		13.63	□□□□□ -0.23
SHMT2-223	ENST00000556689	RPL10A	P62906	217 aa	Known RBP	13.63	□□□□□ -0.23
SHMT2-223	ENST00000556689	FAM160A1	Q05DH4	1040 aa		13.63	□□□□□ -0.23
SHMT2-223	ENST00000556689	DDR2	Q16832	855 aa		13.63	□□□□□ -0.23
SHMT2-223	ENST00000556689	USP39	Q53GS9	565 aa	Known RBP	13.63	□□□□□ -0.23
SHMT2-223	ENST00000556689	SDHAF4	Q5VUM1	108 aa		13.63	□□□□□ -0.23
SHMT2-223	ENST00000556689	UNQ6494/PRO21346	Q6UXR6	183 aa		13.63	□□□□□ -0.23
SHMT2-223	ENST00000556689	C11orf74	Q86VG3	221 aa		13.63	□□□□□ -0.23
SHMT2-223	ENST00000556689	TTC16	Q8NEE8	873 aa		13.63	□□□□□ -0.23
SHMT2-223	ENST00000556689	ATP2A3	Q93084	1043 aa		13.63	□□□□□ -0.23
SHMT2-223	ENST00000556689	CALML4	Q96GE6	196 aa		13.63	□□□□□ -0.23
SHMT2-223	ENST00000556689	AK8	Q96MA6	479 aa		13.63	□□□□□ -0.23
SHMT2-223	ENST00000556689	CYP2S1	Q96SQ9	504 aa		13.63	□□□□□ -0.23
SHMT2-223	ENST00000556689	ZMIZ1	Q9ULJ6	1067 aa		13.63	□□□□□ -0.23
SHMT2-223	ENST00000556689	INVS	Q9Y283	1065 aa		13.63	□□□□□ -0.23
SHMT2-223	ENST00000556689	STYXL1	Q9Y6J8	313 aa		13.63	□□□□□ -0.23
SHMT2-223	ENST00000556689	NUP210	Q8TEM1	1887 aa	Predicted RBP	13.63	□□□□□ -0.23
SHMT2-223	ENST00000556689	CNOT1	A5YKK6	2376 aa	Known RBP	13.63	□□□□□ -0.23
SHMT2-223	ENST00000556689	TRAV19	A0A0A6YYK7	116 aa		13.62	□□□□□ -0.23
SHMT2-223	ENST00000556689	USP17L7	P0C7H9	530 aa		13.62	□□□□□ -0.23
SHMT2-223	ENST00000556689	CEACAM1	P13688	526 aa		13.62	□□□□□ -0.23
SHMT2-223	ENST00000556689	CYP2F1	P24903	491 aa		13.62	□□□□□ -0.23
SHMT2-223	ENST00000556689	PNPLA4	P41247	253 aa		13.62	□□□□□ -0.23
SHMT2-223	ENST00000556689	IFNAR2	P48551	515 aa		13.62	□□□□□ -0.23
SHMT2-223	ENST00000556689	FOXC1	Q12948	553 aa		13.62	□□□□□ -0.23
SHMT2-223	ENST00000556689	MCM6	Q14566	821 aa		13.62	□□□□□ -0.23
SHMT2-223	ENST00000556689	SH3PXD2A	Q5TCZ1	1133 aa		13.62	□□□□□ -0.23
SHMT2-223	ENST00000556689	NT5DC4	Q86YG4	428 aa		13.62	□□□□□ -0.23

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