RNA–Protein interactions for RNA: ENST00000556534.1

SCFD1-221, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 864 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-221ENST00000556534 ISM1B1AKI9 464 aa5.7□□□□□ -1.5
SCFD1-221ENST00000556534 KIF3BO15066 747 aa5.7□□□□□ -1.5
SCFD1-221ENST00000556534 GCP02774 474 aa5.7□□□□□ -1.5
SCFD1-221ENST00000556534 ATXN1LP0C7T5 689 aaKnown RBP5.7□□□□□ -1.5
SCFD1-221ENST00000556534 MYF5P13349 255 aa5.7□□□□□ -1.5
SCFD1-221ENST00000556534 CD6P30203 668 aa5.7□□□□□ -1.5
SCFD1-221ENST00000556534 WNT3P56703 355 aa5.7□□□□□ -1.5
SCFD1-221ENST00000556534 LILRA4P59901 499 aa5.7□□□□□ -1.5
SCFD1-221ENST00000556534 SLC13A2Q13183 592 aa5.7□□□□□ -1.5
SCFD1-221ENST00000556534 CTBP1Q13363 440 aa5.7□□□□□ -1.5
SCFD1-221ENST00000556534 HSP90AB2PQ58FF8 381 aa5.7□□□□□ -1.5
SCFD1-221ENST00000556534 VPS53Q5VIR6 699 aa5.7□□□□□ -1.5
SCFD1-221ENST00000556534 LMBRD2Q68DH5 695 aaPredicted RBP5.7□□□□□ -1.5
SCFD1-221ENST00000556534 KIAA0895LQ68EN5 471 aa5.7□□□□□ -1.5
SCFD1-221ENST00000556534 TMEM108Q6UXF1 575 aa5.7□□□□□ -1.5
SCFD1-221ENST00000556534 CAVIN3Q969G5 261 aa5.7□□□□□ -1.5
SCFD1-221ENST00000556534 APIPQ96GX9 242 aa5.7□□□□□ -1.5
SCFD1-221ENST00000556534 MRIQ9BWK5 157 aa5.7□□□□□ -1.5
SCFD1-221ENST00000556534 CPNE7Q9UBL6 633 aa5.7□□□□□ -1.5
SCFD1-221ENST00000556534 PACSIN3Q9UKS6 424 aa5.7□□□□□ -1.5
SCFD1-221ENST00000556534 TPCN1Q9ULQ1 816 aa5.7□□□□□ -1.5
SCFD1-221ENST00000556534 DMTF1Q9Y222 760 aa5.7□□□□□ -1.5
SCFD1-221ENST00000556534 PCDHGB6Q9Y5F9 930 aa5.7□□□□□ -1.5
SCFD1-221ENST00000556534 DMRT1Q9Y5R6 373 aa5.7□□□□□ -1.5
SCFD1-221ENST00000556534 TRIM43BA6NCK2 446 aa5.69□□□□□ -1.5
SCFD1-221ENST00000556534 TMEM233B4DJY2 109 aa5.69□□□□□ -1.5
SCFD1-221ENST00000556534 F5H697 171 aa5.69□□□□□ -1.5
SCFD1-221ENST00000556534 YY2O15391 372 aa5.69□□□□□ -1.5
SCFD1-221ENST00000556534 BRAFP15056 766 aa5.69□□□□□ -1.5
SCFD1-221ENST00000556534 SUMO3P55854 103 aaPredicted RBP5.69□□□□□ -1.5
SCFD1-221ENST00000556534 TGFB2P61812 414 aa5.69□□□□□ -1.5
SCFD1-221ENST00000556534 IQCB1Q15051 598 aa5.69□□□□□ -1.5
SCFD1-221ENST00000556534 AMOTQ4VCS5 1084 aa5.69□□□□□ -1.5
SCFD1-221ENST00000556534 TSHZ1Q6ZSZ6 1077 aa5.69□□□□□ -1.5
SCFD1-221ENST00000556534 MICU3Q86XE3 530 aa5.69□□□□□ -1.5
SCFD1-221ENST00000556534 SLC15A4Q8N697 577 aa5.69□□□□□ -1.5
SCFD1-221ENST00000556534 TTC17Q96AE7 1141 aa5.69□□□□□ -1.5
SCFD1-221ENST00000556534 TRIM43Q96BQ3 446 aaPredicted RBP5.69□□□□□ -1.5
SCFD1-221ENST00000556534 SUCLG2Q96I99 432 aa5.69□□□□□ -1.5
SCFD1-221ENST00000556534 MESP1Q9BRJ9 268 aa5.69□□□□□ -1.5
SCFD1-221ENST00000556534 LRRC27Q9C0I9 530 aa5.69□□□□□ -1.5
SCFD1-221ENST00000556534 ALG13Q9NP73 1137 aaKnown RBP5.69□□□□□ -1.5
SCFD1-221ENST00000556534 SALL3Q9BXA9 1300 aa5.69□□□□□ -1.5
SCFD1-221ENST00000556534 WDR33Q9C0J8 1336 aaKnown RBP5.69□□□□□ -1.5
SCFD1-221ENST00000556534 WDR27A2RRH5 827 aa5.68□□□□□ -1.5
SCFD1-221ENST00000556534 TRIAP1O43715 76 aa5.68□□□□□ -1.5
SCFD1-221ENST00000556534 PEX1O43933 1283 aa5.68□□□□□ -1.5
SCFD1-221ENST00000556534 MGEA5O60502 916 aa5.68□□□□□ -1.5
SCFD1-221ENST00000556534 RHOP08100 348 aa5.68□□□□□ -1.5
SCFD1-221ENST00000556534 PPIFP30405 207 aaKnown RBP5.68□□□□□ -1.5
SCFD1-221ENST00000556534 GNALP38405 381 aa5.68□□□□□ -1.5
SCFD1-221ENST00000556534 FOLR3P41439 243 aa5.68□□□□□ -1.5
SCFD1-221ENST00000556534 ITIH3Q06033 890 aa5.68□□□□□ -1.5
SCFD1-221ENST00000556534 RAB32Q13637 225 aa5.68□□□□□ -1.5
SCFD1-221ENST00000556534 CNGA2Q16280 664 aa5.68□□□□□ -1.5
SCFD1-221ENST00000556534 TXNRD1Q16881 649 aa5.68□□□□□ -1.5
SCFD1-221ENST00000556534 PPP4R4Q6NUP7 873 aa5.68□□□□□ -1.5
SCFD1-221ENST00000556534 GAS2L3Q86XJ1 694 aa5.68□□□□□ -1.5
SCFD1-221ENST00000556534 KRT78Q8N1N4 520 aa5.68□□□□□ -1.5
SCFD1-221ENST00000556534 B3GALNT2Q8NCR0 500 aa5.68□□□□□ -1.5
SCFD1-221ENST00000556534 TOR1AIP2Q8NFQ8 470 aa5.68□□□□□ -1.5
SCFD1-221ENST00000556534 ACTRT2Q8TDY3 377 aa5.68□□□□□ -1.5
SCFD1-221ENST00000556534 FAM136AQ96C01 138 aa5.68□□□□□ -1.5
SCFD1-221ENST00000556534 NMD3Q96D46 503 aaKnown RBP5.68□□□□□ -1.5
SCFD1-221ENST00000556534 MOGAT1Q96PD6 335 aa5.68□□□□□ -1.5
SCFD1-221ENST00000556534 ACTRT3Q9BYD9 372 aa5.68□□□□□ -1.5
SCFD1-221ENST00000556534 AMBRA1Q9C0C7 1298 aa5.68□□□□□ -1.5
SCFD1-221ENST00000556534 ZNF518BQ9C0D4 1074 aa5.68□□□□□ -1.5
SCFD1-221ENST00000556534 BTBD1Q9H0C5 482 aa5.68□□□□□ -1.5
SCFD1-221ENST00000556534 SERHLQ9NQF3 203 aa5.68□□□□□ -1.5
SCFD1-221ENST00000556534 FOXJ2Q9P0K8 574 aa5.68□□□□□ -1.5
SCFD1-221ENST00000556534 AFF4Q9UHB7 1163 aaKnown RBP5.68□□□□□ -1.5
SCFD1-221ENST00000556534 SHOC2Q9UQ13 582 aa5.68□□□□□ -1.5
SCFD1-221ENST00000556534 PAXBP1Q9Y5B6 917 aa5.68□□□□□ -1.5
SCFD1-221ENST00000556534 ADGRA2Q96PE1 1338 aa5.68□□□□□ -1.5
SCFD1-221ENST00000556534 VWC2LB2RUY7 222 aa5.67□□□□□ -1.5
SCFD1-221ENST00000556534 MPPED1O15442 326 aa5.67□□□□□ -1.5
SCFD1-221ENST00000556534 TBC1D4O60343 1298 aa5.67□□□□□ -1.5
SCFD1-221ENST00000556534 RHOBTB3O94955 611 aa5.67□□□□□ -1.5
SCFD1-221ENST00000556534 PLA2G5P39877 138 aa5.67□□□□□ -1.5
SCFD1-221ENST00000556534 PXNP49023 591 aaPredicted RBP5.67□□□□□ -1.5
SCFD1-221ENST00000556534 MRPS35P82673 323 aaKnown RBP5.67□□□□□ -1.5
SCFD1-221ENST00000556534 FMO1Q01740 532 aa5.67□□□□□ -1.5
SCFD1-221ENST00000556534 ZIK1Q3SY52 487 aaPredicted RBP5.67□□□□□ -1.5
SCFD1-221ENST00000556534 DCAF12L1Q5VU92 463 aa5.67□□□□□ -1.5
SCFD1-221ENST00000556534 LAYNQ6UX15 382 aa5.67□□□□□ -1.5
SCFD1-221ENST00000556534 SESTD1Q86VW0 696 aa5.67□□□□□ -1.5
SCFD1-221ENST00000556534 GPR150Q8NGU9 434 aa5.67□□□□□ -1.5
SCFD1-221ENST00000556534 OR56A3Q8NH54 315 aa5.67□□□□□ -1.5
SCFD1-221ENST00000556534 PGBD1Q96JS3 809 aa5.67□□□□□ -1.5
SCFD1-221ENST00000556534 PTDSS2Q9BVG9 487 aa5.67□□□□□ -1.5
SCFD1-221ENST00000556534 SARGQ9BW04 601 aa5.67□□□□□ -1.5
SCFD1-221ENST00000556534 TPSD1Q9BZJ3 242 aa5.67□□□□□ -1.5
SCFD1-221ENST00000556534 GEMIN8Q9NWZ8 242 aaKnown RBP5.67□□□□□ -1.5
SCFD1-221ENST00000556534 COL20A1Q9P218 1284 aa5.67□□□□□ -1.5
SCFD1-221ENST00000556534 MBD3L4A6NDZ8 208 aaPredicted RBP5.66□□□□□ -1.5
SCFD1-221ENST00000556534 MBD3L3A6NE82 208 aaPredicted RBP5.66□□□□□ -1.5
SCFD1-221ENST00000556534 ADM5C9JUS6 153 aa5.66□□□□□ -1.5
SCFD1-221ENST00000556534 MYO1CO00159 1063 aa5.66□□□□□ -1.5
SCFD1-221ENST00000556534 MGST3O14880 152 aa5.66□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms