RNA–Protein interactions for RNA: ENST00000556353.1

PRPF39-209, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 687 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-209ENST00000556353 SRSF4Q08170 494 aaKnown RBP6.44□□□□□ -1.38
PRPF39-209ENST00000556353 VPS53Q5VIR6 699 aa6.44□□□□□ -1.38
PRPF39-209ENST00000556353 TMEM108Q6UXF1 575 aa6.44□□□□□ -1.38
PRPF39-209ENST00000556353 ZNF551Q7Z340 670 aaPredicted RBP6.44□□□□□ -1.38
PRPF39-209ENST00000556353 SLC35A4Q96G79 324 aa6.44□□□□□ -1.38
PRPF39-209ENST00000556353 CDK5RAP3Q96JB5 506 aa6.44□□□□□ -1.38
PRPF39-209ENST00000556353 MAP3K14Q99558 947 aa6.44□□□□□ -1.38
PRPF39-209ENST00000556353 AASDHPPTQ9NRN7 309 aa6.44□□□□□ -1.38
PRPF39-209ENST00000556353 DKK3Q9UBP4 350 aa6.44□□□□□ -1.38
PRPF39-209ENST00000556353 IP6K2Q9UHH9 426 aa6.44□□□□□ -1.38
PRPF39-209ENST00000556353 PADI4Q9UM07 663 aa6.44□□□□□ -1.38
PRPF39-209ENST00000556353 TTBK1Q5TCY1 1321 aaPredicted RBP6.44□□□□□ -1.38
PRPF39-209ENST00000556353 INO80B-WBP1J3KQ70 363 aa6.43□□□□□ -1.38
PRPF39-209ENST00000556353 DRD4P21917 467 aa6.43□□□□□ -1.38
PRPF39-209ENST00000556353 ABCG1P45844 678 aa6.43□□□□□ -1.38
PRPF39-209ENST00000556353 NKX6-1P78426 367 aaPredicted RBP6.43□□□□□ -1.38
PRPF39-209ENST00000556353 EIF2B5Q13144 721 aaKnown RBP6.43□□□□□ -1.38
PRPF39-209ENST00000556353 BOP1Q14137 746 aaKnown RBP6.43□□□□□ -1.38
PRPF39-209ENST00000556353 PLS1Q14651 629 aa6.43□□□□□ -1.38
PRPF39-209ENST00000556353 EMC10Q5UCC4 262 aa6.43□□□□□ -1.38
PRPF39-209ENST00000556353 SFRP4Q6FHJ7 346 aaPredicted RBP6.43□□□□□ -1.38
PRPF39-209ENST00000556353 LAYNQ6UX15 382 aa6.43□□□□□ -1.38
PRPF39-209ENST00000556353 PCSK9Q8NBP7 692 aaKnown RBP6.43□□□□□ -1.38
PRPF39-209ENST00000556353 KLHDC4Q8TBB5 520 aa6.43□□□□□ -1.38
PRPF39-209ENST00000556353 MTFMTQ96DP5 389 aaKnown RBP6.43□□□□□ -1.38
PRPF39-209ENST00000556353 SLC46A1Q96NT5 459 aa6.43□□□□□ -1.38
PRPF39-209ENST00000556353 INO80BQ9C086 356 aaPredicted RBP6.43□□□□□ -1.38
PRPF39-209ENST00000556353 ARHGEF3Q9NR81 526 aa6.43□□□□□ -1.38
PRPF39-209ENST00000556353 SERTAD4Q9NUC0 356 aa6.43□□□□□ -1.38
PRPF39-209ENST00000556353 HESX1Q9UBX0 185 aa6.43□□□□□ -1.38
PRPF39-209ENST00000556353 ANKRD6Q9Y2G4 727 aa6.43□□□□□ -1.38
PRPF39-209ENST00000556353 IFT140Q96RY7 1462 aa6.42□□□□□ -1.38
PRPF39-209ENST00000556353 PRKCGP05129 697 aa6.42□□□□□ -1.38
PRPF39-209ENST00000556353 CT47B1P0C2W7 299 aaPredicted RBP6.42□□□□□ -1.38
PRPF39-209ENST00000556353 PF4V1P10720 104 aa6.42□□□□□ -1.38
PRPF39-209ENST00000556353 NDUFB7P17568 137 aa6.42□□□□□ -1.38
PRPF39-209ENST00000556353 HDCP19113 662 aa6.42□□□□□ -1.38
PRPF39-209ENST00000556353 LONRF3Q496Y0 759 aa6.42□□□□□ -1.38
PRPF39-209ENST00000556353 ZNF618Q5T7W0 954 aa6.42□□□□□ -1.38
PRPF39-209ENST00000556353 KIAA1614Q5VZ46 1190 aa6.42□□□□□ -1.38
PRPF39-209ENST00000556353 ICE2Q659A1 982 aa6.42□□□□□ -1.38
PRPF39-209ENST00000556353 SUMO4Q6EEV6 95 aa6.42□□□□□ -1.38
PRPF39-209ENST00000556353 GRAMD1CQ8IYS0 662 aa6.42□□□□□ -1.38
PRPF39-209ENST00000556353 HOOK2Q96ED9 719 aa6.42□□□□□ -1.38
PRPF39-209ENST00000556353 GPATCH3Q96I76 525 aa6.42□□□□□ -1.38
PRPF39-209ENST00000556353 PUS7Q96PZ0 661 aaKnown RBP6.42□□□□□ -1.38
PRPF39-209ENST00000556353 TTYH3Q9C0H2 523 aa6.42□□□□□ -1.38
PRPF39-209ENST00000556353 SARS2Q9NP81 518 aaKnown RBP6.42□□□□□ -1.38
PRPF39-209ENST00000556353 ANKRD62A6NC57 917 aa6.41□□□□□ -1.38
PRPF39-209ENST00000556353 WIPF3A6NGB9 483 aa6.41□□□□□ -1.38
PRPF39-209ENST00000556353 CGB1A6NKQ9 187 aa6.41□□□□□ -1.38
PRPF39-209ENST00000556353 PPM1DO15297 605 aa6.41□□□□□ -1.38
PRPF39-209ENST00000556353 HNRNPCP07910 306 aaKnown RBP eCLIP6.41□□□□□ -1.387e-10■■□□□ 14.3
PRPF39-209ENST00000556353 PDHA1P08559 390 aa6.41□□□□□ -1.38
PRPF39-209ENST00000556353 ATXN1LP0C7T5 689 aaKnown RBP6.41□□□□□ -1.38
PRPF39-209ENST00000556353 KCNJ5P48544 419 aa6.41□□□□□ -1.38
PRPF39-209ENST00000556353 ALDH9A1P49189 494 aa6.41□□□□□ -1.38
PRPF39-209ENST00000556353 ZNF134P52741 427 aa6.41□□□□□ -1.38
PRPF39-209ENST00000556353 SOX8P57073 446 aa6.41□□□□□ -1.38
PRPF39-209ENST00000556353 AMOTQ4VCS5 1084 aa6.41□□□□□ -1.38
PRPF39-209ENST00000556353 HPS3Q969F9 1004 aa6.41□□□□□ -1.38
PRPF39-209ENST00000556353 SERHLQ9NQF3 203 aa6.41□□□□□ -1.38
PRPF39-209ENST00000556353 AOX1Q06278 1338 aa6.41□□□□□ -1.38
PRPF39-209ENST00000556353 POLA1P09884 1462 aaPredicted RBP6.41□□□□□ -1.38
PRPF39-209ENST00000556353 DNAJC9-AS1A6NH13 148 aa6.4□□□□□ -1.38
PRPF39-209ENST00000556353 TLR5O60602 858 aa6.4□□□□□ -1.38
PRPF39-209ENST00000556353 OFD1O75665 1012 aa6.4□□□□□ -1.38
PRPF39-209ENST00000556353 DNAJB5O75953 348 aa6.4□□□□□ -1.38
PRPF39-209ENST00000556353 UNC5CO95185 931 aa6.4□□□□□ -1.38
PRPF39-209ENST00000556353 PCSK6P29122 969 aa6.4□□□□□ -1.38
PRPF39-209ENST00000556353 LOXL3P58215 753 aa6.4□□□□□ -1.38
PRPF39-209ENST00000556353 KHDC1LQ5JSQ8 128 aa6.4□□□□□ -1.38
PRPF39-209ENST00000556353 DTX2Q86UW9 622 aa6.4□□□□□ -1.38
PRPF39-209ENST00000556353 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP6.4□□□□□ -1.38
PRPF39-209ENST00000556353 DPF1Q92782 380 aa6.4□□□□□ -1.38
PRPF39-209ENST00000556353 C1GALT1C1Q96EU7 318 aa6.4□□□□□ -1.38
PRPF39-209ENST00000556353 PCDHA6Q9UN73 950 aa6.4□□□□□ -1.38
PRPF39-209ENST00000556353 STXBP5LQ9Y2K9 1186 aa6.4□□□□□ -1.38
PRPF39-209ENST00000556353 PLEKHM1Q9Y4G2 1056 aa6.4□□□□□ -1.38
PRPF39-209ENST00000556353 PBRM1Q86U86 1689 aa6.39□□□□□ -1.39
PRPF39-209ENST00000556353 DCLK1O15075 740 aa6.39□□□□□ -1.39
PRPF39-209ENST00000556353 ABLIM3O94929 683 aa6.39□□□□□ -1.39
PRPF39-209ENST00000556353 ALDH2P05091 517 aa6.39□□□□□ -1.39
PRPF39-209ENST00000556353 FAM163BP0C2L3 166 aa6.39□□□□□ -1.39
PRPF39-209ENST00000556353 PXNP49023 591 aaPredicted RBP6.39□□□□□ -1.39
PRPF39-209ENST00000556353 SLC10A2Q12908 348 aaPredicted RBP6.39□□□□□ -1.39
PRPF39-209ENST00000556353 HNRNPA0Q13151 305 aaKnown RBP6.39□□□□□ -1.39
PRPF39-209ENST00000556353 IQCB1Q15051 598 aa6.39□□□□□ -1.39
PRPF39-209ENST00000556353 ATAT1Q5SQI0 421 aa6.39□□□□□ -1.39
PRPF39-209ENST00000556353 IFIT1BQ5T764 474 aaKnown RBP6.39□□□□□ -1.39
PRPF39-209ENST00000556353 LRCH2Q5VUJ6 765 aa6.39□□□□□ -1.39
PRPF39-209ENST00000556353 CEP85Q6P2H3 762 aa6.39□□□□□ -1.39
PRPF39-209ENST00000556353 DDB2Q92466 427 aa6.39□□□□□ -1.39
PRPF39-209ENST00000556353 ANKS1AQ92625 1134 aa6.39□□□□□ -1.39
PRPF39-209ENST00000556353 MOGAT1Q96PD6 335 aa6.39□□□□□ -1.39
PRPF39-209ENST00000556353 CGRRF1Q99675 332 aa6.39□□□□□ -1.39
PRPF39-209ENST00000556353 CNNM1Q9NRU3 951 aa6.39□□□□□ -1.39
PRPF39-209ENST00000556353 TYW1Q9NV66 732 aaKnown RBP6.39□□□□□ -1.39
PRPF39-209ENST00000556353 ARHGEF11O15085 1522 aa6.39□□□□□ -1.39
PRPF39-209ENST00000556353 CUX1P39880 1505 aa6.39□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms