RNA–Protein interactions for RNA: ENST00000554997.1

SYNE2-215, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 711 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-215ENST00000554997 LRCH3Q96II8 777 aa10.86□□□□□ -0.67
SYNE2-215ENST00000554997 PKMYT1Q99640 499 aa10.86□□□□□ -0.67
SYNE2-215ENST00000554997 SYT15Q9BQS2 421 aa10.86□□□□□ -0.67
SYNE2-215ENST00000554997 IMPACTQ9P2X3 320 aa10.86□□□□□ -0.67
SYNE2-215ENST00000554997 GTF3C4Q9UKN8 822 aa10.86□□□□□ -0.67
SYNE2-215ENST00000554997 MAFFQ9ULX9 164 aa10.86□□□□□ -0.67
SYNE2-215ENST00000554997 CDY1Q9Y6F8 540 aa10.86□□□□□ -0.67
SYNE2-215ENST00000554997 GBF1Q92538 1859 aa10.85□□□□□ -0.67
SYNE2-215ENST00000554997 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP10.85□□□□□ -0.67
SYNE2-215ENST00000554997 MYBPHLA2RUH7 354 aa10.85□□□□□ -0.67
SYNE2-215ENST00000554997 LRRC53A6NM62 1247 aa10.85□□□□□ -0.67
SYNE2-215ENST00000554997 CYP26A1O43174 497 aa10.85□□□□□ -0.67
SYNE2-215ENST00000554997 ADAM12O43184 909 aa10.85□□□□□ -0.67
SYNE2-215ENST00000554997 VDRP11473 427 aa10.85□□□□□ -0.67
SYNE2-215ENST00000554997 RPL17P18621 184 aaKnown RBP10.85□□□□□ -0.67
SYNE2-215ENST00000554997 KLRC2P26717 231 aa10.85□□□□□ -0.67
SYNE2-215ENST00000554997 KRT9P35527 623 aa10.85□□□□□ -0.67
SYNE2-215ENST00000554997 TSPY1Q01534 308 aa10.85□□□□□ -0.67
SYNE2-215ENST00000554997 CNGA2Q16280 664 aa10.85□□□□□ -0.67
SYNE2-215ENST00000554997 NFE2Q16621 373 aaPredicted RBP10.85□□□□□ -0.67
SYNE2-215ENST00000554997 ZNF697Q5TEC3 545 aa10.85□□□□□ -0.67
SYNE2-215ENST00000554997 SFMBT2Q5VUG0 894 aa10.85□□□□□ -0.67
SYNE2-215ENST00000554997 PLPP4Q5VZY2 271 aa10.85□□□□□ -0.67
SYNE2-215ENST00000554997 TPGS2Q68CL5 300 aa10.85□□□□□ -0.67
SYNE2-215ENST00000554997 LILRA6Q6PI73 481 aa10.85□□□□□ -0.67
SYNE2-215ENST00000554997 IRF2BP2Q7Z5L9 587 aa10.85□□□□□ -0.67
SYNE2-215ENST00000554997 OR8K1Q8NGG5 319 aa10.85□□□□□ -0.67
SYNE2-215ENST00000554997 GDPD5Q8WTR4 605 aa10.85□□□□□ -0.67
SYNE2-215ENST00000554997 C2orf15Q8WU43 125 aaKnown RBP10.85□□□□□ -0.67
SYNE2-215ENST00000554997 ANP32BQ92688 251 aaKnown RBP10.85□□□□□ -0.67
SYNE2-215ENST00000554997 CYFIP2Q96F07 1278 aa10.85□□□□□ -0.67
SYNE2-215ENST00000554997 TMEM209Q96SK2 561 aa10.85□□□□□ -0.67
SYNE2-215ENST00000554997 DPEP3Q9H4B8 488 aa10.85□□□□□ -0.67
SYNE2-215ENST00000554997 CRTAC1Q9NQ79 661 aa10.85□□□□□ -0.67
SYNE2-215ENST00000554997 HMGXB4Q9UGU5 601 aa10.85□□□□□ -0.67
SYNE2-215ENST00000554997 SCN1AP35498 2009 aa10.84□□□□□ -0.67
SYNE2-215ENST00000554997 AKR1B15C9JRZ8 316 aaPredicted RBP10.84□□□□□ -0.67
SYNE2-215ENST00000554997 GFPT2O94808 682 aa10.84□□□□□ -0.67
SYNE2-215ENST00000554997 ADH1AP07327 375 aa10.84□□□□□ -0.67
SYNE2-215ENST00000554997 PNMA6AP0CW24 399 aaPredicted RBP10.84□□□□□ -0.67
SYNE2-215ENST00000554997 ATF2P15336 505 aa10.84□□□□□ -0.67
SYNE2-215ENST00000554997 FERP16591 822 aa10.84□□□□□ -0.67
SYNE2-215ENST00000554997 HNRNPH3P31942 346 aaKnown RBP10.84□□□□□ -0.67
SYNE2-215ENST00000554997 CA8P35219 290 aa10.84□□□□□ -0.67
SYNE2-215ENST00000554997 ARPP19P56211 112 aa10.84□□□□□ -0.67
SYNE2-215ENST00000554997 ORC1Q13415 861 aa10.84□□□□□ -0.67
SYNE2-215ENST00000554997 STILQ15468 1287 aa10.84□□□□□ -0.67
SYNE2-215ENST00000554997 TSR1Q2NL82 804 aaKnown RBP10.84□□□□□ -0.67
SYNE2-215ENST00000554997 SLC39A12Q504Y0 691 aa10.84□□□□□ -0.67
SYNE2-215ENST00000554997 ARHGAP17Q68EM7 881 aa10.84□□□□□ -0.67
SYNE2-215ENST00000554997 RNF19BQ6ZMZ0 732 aa10.84□□□□□ -0.67
SYNE2-215ENST00000554997 C4orf50Q6ZRC1 276 aa10.84□□□□□ -0.67
SYNE2-215ENST00000554997 SLC47A2Q86VL8 602 aa10.84□□□□□ -0.67
SYNE2-215ENST00000554997 PALB2Q86YC2 1186 aa10.84□□□□□ -0.67
SYNE2-215ENST00000554997 CNGA4Q8IV77 575 aa10.84□□□□□ -0.67
SYNE2-215ENST00000554997 C12orf29Q8N999 325 aa10.84□□□□□ -0.67
SYNE2-215ENST00000554997 ZNF606Q8WXB4 792 aa10.84□□□□□ -0.67
SYNE2-215ENST00000554997 PCED1BQ96HM7 432 aa10.84□□□□□ -0.67
SYNE2-215ENST00000554997 DNAJC7Q99615 494 aa10.84□□□□□ -0.67
SYNE2-215ENST00000554997 HNRNPABQ99729 332 aaKnown RBP10.84□□□□□ -0.67
SYNE2-215ENST00000554997 LPIN3Q9BQK8 851 aa10.84□□□□□ -0.67
SYNE2-215ENST00000554997 B3GNT5Q9BYG0 378 aa10.84□□□□□ -0.67
SYNE2-215ENST00000554997 PRDM12Q9H4Q4 367 aa10.84□□□□□ -0.67
SYNE2-215ENST00000554997 TMLHEQ9NVH6 421 aa10.84□□□□□ -0.67
SYNE2-215ENST00000554997 HSFX1Q9UBD0 423 aa10.84□□□□□ -0.67
SYNE2-215ENST00000554997 AFF4Q9UHB7 1163 aaKnown RBP10.84□□□□□ -0.67
SYNE2-215ENST00000554997 BZW2Q9Y6E2 419 aaKnown RBP10.84□□□□□ -0.67
SYNE2-215ENST00000554997 WDR27A2RRH5 827 aa10.83□□□□□ -0.68
SYNE2-215ENST00000554997 MED7O43513 233 aa10.83□□□□□ -0.68
SYNE2-215ENST00000554997 CLASP2O75122 1294 aaKnown RBP10.83□□□□□ -0.68
SYNE2-215ENST00000554997 OR4Q2P0C623 313 aa10.83□□□□□ -0.68
SYNE2-215ENST00000554997 CPB1P15086 417 aa10.83□□□□□ -0.68
SYNE2-215ENST00000554997 CD19P15391 556 aa10.83□□□□□ -0.68
SYNE2-215ENST00000554997 CYP11B1P15538 503 aa10.83□□□□□ -0.68
SYNE2-215ENST00000554997 GNA15P30679 374 aa10.83□□□□□ -0.68
SYNE2-215ENST00000554997 ADKP55263 362 aaKnown RBP10.83□□□□□ -0.68
SYNE2-215ENST00000554997 PSMC1P62191 440 aaKnown RBP10.83□□□□□ -0.68
SYNE2-215ENST00000554997 ROR1Q01973 937 aa10.83□□□□□ -0.68
SYNE2-215ENST00000554997 ARID5AQ03989 594 aa10.83□□□□□ -0.68
SYNE2-215ENST00000554997 CFAP221Q4G0U5 840 aa10.83□□□□□ -0.68
SYNE2-215ENST00000554997 SGO2Q562F6 1265 aa10.83□□□□□ -0.68
SYNE2-215ENST00000554997 MDH1BQ5I0G3 518 aa10.83□□□□□ -0.68
SYNE2-215ENST00000554997 PPP1R26Q5T8A7 1209 aaPredicted RBP10.83□□□□□ -0.68
SYNE2-215ENST00000554997 LCLAT1Q6UWP7 414 aa10.83□□□□□ -0.68
SYNE2-215ENST00000554997 PAQR9Q6ZVX9 377 aa10.83□□□□□ -0.68
SYNE2-215ENST00000554997 RTL10Q7L3V2 364 aa10.83□□□□□ -0.68
SYNE2-215ENST00000554997 ZNF677Q86XU0 584 aa10.83□□□□□ -0.68
SYNE2-215ENST00000554997 FUKQ8N0W3 1084 aa10.83□□□□□ -0.68
SYNE2-215ENST00000554997 SPPL2BQ8TCT7 592 aa10.83□□□□□ -0.68
SYNE2-215ENST00000554997 SLC22A17Q8WUG5 538 aa10.83□□□□□ -0.68
SYNE2-215ENST00000554997 HDAC7Q8WUI4 952 aa10.83□□□□□ -0.68
SYNE2-215ENST00000554997 TFAP2BQ92481 460 aa10.83□□□□□ -0.68
SYNE2-215ENST00000554997 PPP2R3CQ969Q6 453 aa10.83□□□□□ -0.68
SYNE2-215ENST00000554997 FUBP3Q96I24 572 aaKnown RBP eCLIP10.83□□□□□ -0.68
SYNE2-215ENST00000554997 CDCA3Q99618 268 aaPredicted RBP10.83□□□□□ -0.68
SYNE2-215ENST00000554997 ZSWIM1Q9BR11 485 aa10.83□□□□□ -0.68
SYNE2-215ENST00000554997 UBXN6Q9BZV1 441 aa10.83□□□□□ -0.68
SYNE2-215ENST00000554997 TLE6Q9H808 572 aa10.83□□□□□ -0.68
SYNE2-215ENST00000554997 ABCB6Q9NP58 842 aa10.83□□□□□ -0.68
SYNE2-215ENST00000554997 ACP6Q9NPH0 428 aa10.83□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms