RNA–Protein interactions for RNA: ENST00000554785.1

PRPF39-208, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 2,121 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-208ENST00000554785 ZFPL1O95159 310 aa1.9□□□□□ -2.11
PRPF39-208ENST00000554785 CFIP05156 583 aa1.9□□□□□ -2.11
PRPF39-208ENST00000554785 SNRPA1P09661 255 aaKnown RBP1.9□□□□□ -2.11
PRPF39-208ENST00000554785 FTH1P19P0C7X4 201 aa1.9□□□□□ -2.11
PRPF39-208ENST00000554785 EGR2P11161 476 aaPredicted RBP1.9□□□□□ -2.11
PRPF39-208ENST00000554785 PHKG2P15735 406 aa1.9□□□□□ -2.11
PRPF39-208ENST00000554785 ATP5JP18859 108 aa1.9□□□□□ -2.11
PRPF39-208ENST00000554785 YY1P25490 414 aa1.9□□□□□ -2.11
PRPF39-208ENST00000554785 DDX6P26196 483 aaKnown RBP eCLIP1.9□□□□□ -2.11
PRPF39-208ENST00000554785 BMPR1AP36894 532 aa1.9□□□□□ -2.11
PRPF39-208ENST00000554785 SEC24CP53992 1094 aa1.9□□□□□ -2.11
PRPF39-208ENST00000554785 CLRN1P58418 232 aa1.9□□□□□ -2.11
PRPF39-208ENST00000554785 KRTAP10-11P60412 298 aa1.9□□□□□ -2.11
PRPF39-208ENST00000554785 RAB1AP62820 205 aa1.9□□□□□ -2.11
PRPF39-208ENST00000554785 FAM193AP78312 1265 aa1.9□□□□□ -2.11
PRPF39-208ENST00000554785 MRPS21P82921 87 aaKnown RBP1.9□□□□□ -2.11
PRPF39-208ENST00000554785 OCA2Q04671 838 aa1.9□□□□□ -2.11
PRPF39-208ENST00000554785 PLS1Q14651 629 aa1.9□□□□□ -2.11
PRPF39-208ENST00000554785 CNN3Q15417 329 aaKnown RBP1.9□□□□□ -2.11
PRPF39-208ENST00000554785 SAFBQ15424 915 aaKnown RBP eCLIP1.9□□□□□ -2.11
PRPF39-208ENST00000554785 KIAA0753Q2KHM9 967 aa1.9□□□□□ -2.11
PRPF39-208ENST00000554785 FLYWCH1Q4VC44 716 aa1.9□□□□□ -2.11
PRPF39-208ENST00000554785 PABPC1LQ4VXU2 614 aaKnown RBP1.9□□□□□ -2.11
PRPF39-208ENST00000554785 RNF220Q5VTB9 566 aa1.9□□□□□ -2.11
PRPF39-208ENST00000554785 ZNF529Q6P280 563 aa1.9□□□□□ -2.11
PRPF39-208ENST00000554785 DARS2Q6PI48 645 aaKnown RBP1.9□□□□□ -2.11
PRPF39-208ENST00000554785 SEM1Q6ZVN7 128 aa1.9□□□□□ -2.11
PRPF39-208ENST00000554785 DEFB132Q7Z7B7 95 aa1.9□□□□□ -2.11
PRPF39-208ENST00000554785 GPR149Q86SP6 731 aa1.9□□□□□ -2.11
PRPF39-208ENST00000554785 PLXDC1Q8IUK5 500 aa1.9□□□□□ -2.11
PRPF39-208ENST00000554785 DCBLD1Q8N8Z6 715 aa1.9□□□□□ -2.11
PRPF39-208ENST00000554785 PJA1Q8NG27 643 aa1.9□□□□□ -2.11
PRPF39-208ENST00000554785 LINC00476Q8WZB0 136 aa1.9□□□□□ -2.11
PRPF39-208ENST00000554785 DDX17Q92841 729 aaKnown RBP1.9□□□□□ -2.11
PRPF39-208ENST00000554785 NACC2Q96BF6 587 aa1.9□□□□□ -2.11
PRPF39-208ENST00000554785 WDCPQ9H6R7 721 aa1.9□□□□□ -2.11
PRPF39-208ENST00000554785 RIOX1Q9H6W3 641 aa1.9□□□□□ -2.11
PRPF39-208ENST00000554785 CYP4F11Q9HBI6 524 aa1.9□□□□□ -2.11
PRPF39-208ENST00000554785 FBXO34Q9NWN3 711 aa1.9□□□□□ -2.11
PRPF39-208ENST00000554785 VSX1Q9NZR4 365 aaPredicted RBP1.9□□□□□ -2.11
PRPF39-208ENST00000554785 USP25Q9UHP3 1055 aa1.9□□□□□ -2.11
PRPF39-208ENST00000554785 FEZ2Q9UHY8 353 aaPredicted RBP1.9□□□□□ -2.11
PRPF39-208ENST00000554785 FAM50BQ9Y247 325 aa1.9□□□□□ -2.11
PRPF39-208ENST00000554785 A2ML1A8K2U0 1454 aa1.89□□□□□ -2.11
PRPF39-208ENST00000554785 COL16A1Q07092 1604 aaPredicted RBP1.89□□□□□ -2.11
PRPF39-208ENST00000554785 TMEM94Q12767 1356 aa1.89□□□□□ -2.11
PRPF39-208ENST00000554785 ATP7AQ04656 1500 aa1.89□□□□□ -2.11
PRPF39-208ENST00000554785 TCRBV7S2A1N4TA0A589 114 aa1.89□□□□□ -2.11
PRPF39-208ENST00000554785 ANO9A1A5B4 782 aa1.89□□□□□ -2.11
PRPF39-208ENST00000554785 PIPSLA2A3N6 862 aa1.89□□□□□ -2.11
PRPF39-208ENST00000554785 NT5C1B-RDH14C9J2C7 533 aa1.89□□□□□ -2.11
PRPF39-208ENST00000554785 DIRC3C9JPN6 131 aa1.89□□□□□ -2.11
PRPF39-208ENST00000554785 PROB1E7EW31 1015 aa1.89□□□□□ -2.11
PRPF39-208ENST00000554785 F2RL2O00254 374 aa1.89□□□□□ -2.11
PRPF39-208ENST00000554785 GOLIM4O00461 696 aa1.89□□□□□ -2.11
PRPF39-208ENST00000554785 APAF1O14727 1248 aa1.89□□□□□ -2.11
PRPF39-208ENST00000554785 MGST3O14880 152 aa1.89□□□□□ -2.11
PRPF39-208ENST00000554785 KIAA0391O15091 583 aaKnown RBP1.89□□□□□ -2.11
PRPF39-208ENST00000554785 GRM6O15303 877 aa1.89□□□□□ -2.11
PRPF39-208ENST00000554785 POMCP01189 267 aa1.89□□□□□ -2.11
PRPF39-208ENST00000554785 CD1AP06126 327 aa1.89□□□□□ -2.11
PRPF39-208ENST00000554785 NBPF7P0C2Y1 421 aaPredicted RBP1.89□□□□□ -2.11
PRPF39-208ENST00000554785 MTHFD1P11586 935 aaKnown RBP1.89□□□□□ -2.11
PRPF39-208ENST00000554785 PRDX5P30044 214 aa1.89□□□□□ -2.11
PRPF39-208ENST00000554785 MPLP40238 635 aa1.89□□□□□ -2.11
PRPF39-208ENST00000554785 HNRNPMP52272 730 aaKnown RBP eCLIP1.89□□□□□ -2.11
PRPF39-208ENST00000554785 CACNB3P54284 484 aa1.89□□□□□ -2.11
PRPF39-208ENST00000554785 GUCY1B3Q02153 619 aa1.89□□□□□ -2.11
PRPF39-208ENST00000554785 TAP1Q03518 808 aa1.89□□□□□ -2.11
PRPF39-208ENST00000554785 PICALMQ13492 652 aa1.89□□□□□ -2.11
PRPF39-208ENST00000554785 HDAC1Q13547 482 aaPredicted RBP1.89□□□□□ -2.11
PRPF39-208ENST00000554785 UBE4AQ14139 1066 aa1.89□□□□□ -2.11
PRPF39-208ENST00000554785 UBXN2BQ14CS0 331 aa1.89□□□□□ -2.11
PRPF39-208ENST00000554785 DACT2Q5SW24 774 aa1.89□□□□□ -2.11
PRPF39-208ENST00000554785 ZNF362Q5T0B9 420 aaPredicted RBP1.89□□□□□ -2.11
PRPF39-208ENST00000554785 MAEAQ7L5Y9 396 aa1.89□□□□□ -2.11
PRPF39-208ENST00000554785 UBE3BQ7Z3V4 1068 aa1.89□□□□□ -2.11
PRPF39-208ENST00000554785 MAPKAPK5Q8IW41 473 aa1.89□□□□□ -2.11
PRPF39-208ENST00000554785 RHOT2Q8IXI1 618 aa1.89□□□□□ -2.11
PRPF39-208ENST00000554785 TMEM132CQ8N3T6 1108 aa1.89□□□□□ -2.11
PRPF39-208ENST00000554785 LCORLQ8N3X6 602 aa1.89□□□□□ -2.11
PRPF39-208ENST00000554785 SLC44A3Q8N4M1 653 aa1.89□□□□□ -2.11
PRPF39-208ENST00000554785 IL17RDQ8NFM7 739 aa1.89□□□□□ -2.11
PRPF39-208ENST00000554785 ZFP28Q8NHY6 868 aa1.89□□□□□ -2.11
PRPF39-208ENST00000554785 BRIX1Q8TDN6 353 aaKnown RBP1.89□□□□□ -2.11
PRPF39-208ENST00000554785 NT5C1BQ96P26 610 aa1.89□□□□□ -2.11
PRPF39-208ENST00000554785 BHMT2Q9H2M3 363 aa1.89□□□□□ -2.11
PRPF39-208ENST00000554785 SARS2Q9NP81 518 aaKnown RBP1.89□□□□□ -2.11
PRPF39-208ENST00000554785 GNL3LQ9NVN8 582 aaKnown RBP1.89□□□□□ -2.11
PRPF39-208ENST00000554785 SIDT1Q9NXL6 827 aaKnown RBP1.89□□□□□ -2.11
PRPF39-208ENST00000554785 STAP2Q9UGK3 403 aa1.89□□□□□ -2.11
PRPF39-208ENST00000554785 ZNHIT2Q9UHR6 403 aa1.89□□□□□ -2.11
PRPF39-208ENST00000554785 CLCA2Q9UQC9 943 aa1.89□□□□□ -2.11
PRPF39-208ENST00000554785 PCDHA1Q9Y5I3 950 aa1.89□□□□□ -2.11
PRPF39-208ENST00000554785 FPGT-TNNI3KV9GXZ4 949 aa1.89□□□□□ -2.11
PRPF39-208ENST00000554785 SAMD9LQ8IVG5 1584 aa1.89□□□□□ -2.11
PRPF39-208ENST00000554785 AFF2P51816 1311 aa1.89□□□□□ -2.11
PRPF39-208ENST00000554785 AGLP35573 1532 aa1.89□□□□□ -2.11
PRPF39-208ENST00000554785 FAM135AQ9P2D6 1515 aa1.89□□□□□ -2.11
PRPF39-208ENST00000554785 NPATQ14207 1427 aa1.88□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 68.3 ms