RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-206ENST00000553437 GPR15P49685 360 aa11.01□□□□□ -0.65
CCDC88C-206ENST00000553437 AP3M2P53677 418 aa11.01□□□□□ -0.65
CCDC88C-206ENST00000553437 MCCD1P59942 119 aaPredicted RBP11.01□□□□□ -0.65
CCDC88C-206ENST00000553437 ASTLQ6HA08 431 aaPredicted RBP11.01□□□□□ -0.65
CCDC88C-206ENST00000553437 ITIH5Q86UX2 942 aa11.01□□□□□ -0.65
CCDC88C-206ENST00000553437 SMYD4Q8IYR2 804 aaPredicted RBP11.01□□□□□ -0.65
CCDC88C-206ENST00000553437 TMEM105Q8N8V8 129 aa11.01□□□□□ -0.65
CCDC88C-206ENST00000553437 PRSS33Q8NF86 280 aa11.01□□□□□ -0.65
CCDC88C-206ENST00000553437 GIPC2Q8TF65 315 aa11.01□□□□□ -0.65
CCDC88C-206ENST00000553437 ERCC4Q92889 916 aaPredicted RBP11.01□□□□□ -0.65
CCDC88C-206ENST00000553437 ELSPBP1Q96BH3 223 aa11.01□□□□□ -0.65
CCDC88C-206ENST00000553437 PI4K2AQ9BTU6 479 aa11.01□□□□□ -0.65
CCDC88C-206ENST00000553437 MKNK1Q9BUB5 465 aa11.01□□□□□ -0.65
CCDC88C-206ENST00000553437 VRTNQ9H8Y1 702 aa11.01□□□□□ -0.65
CCDC88C-206ENST00000553437 TRPV4Q9HBA0 871 aa11.01□□□□□ -0.65
CCDC88C-206ENST00000553437 ABCB6Q9NP58 842 aa11.01□□□□□ -0.65
CCDC88C-206ENST00000553437 ABI2Q9NYB9 513 aaPredicted RBP11.01□□□□□ -0.65
CCDC88C-206ENST00000553437 FBXL21Q9UKT6 434 aa11.01□□□□□ -0.65
CCDC88C-206ENST00000553437 PCDHA5Q9Y5H7 936 aa11.01□□□□□ -0.65
CCDC88C-206ENST00000553437 IKBKBO14920 756 aa11□□□□□ -0.65
CCDC88C-206ENST00000553437 PI15O43692 258 aa11□□□□□ -0.65
CCDC88C-206ENST00000553437 GADD45BO75293 160 aaPredicted RBP11□□□□□ -0.65
CCDC88C-206ENST00000553437 HMGA1P17096 107 aaKnown RBP11□□□□□ -0.65
CCDC88C-206ENST00000553437 NR2F2P24468 414 aa11□□□□□ -0.65
CCDC88C-206ENST00000553437 CYP2F1P24903 491 aa11□□□□□ -0.65
CCDC88C-206ENST00000553437 ATICP31939 592 aa11□□□□□ -0.65
CCDC88C-206ENST00000553437 PRCPP42785 496 aa11□□□□□ -0.65
CCDC88C-206ENST00000553437 CLCN5P51795 746 aa11□□□□□ -0.65
CCDC88C-206ENST00000553437 TRPC3Q13507 836 aa11□□□□□ -0.65
CCDC88C-206ENST00000553437 NCOA4Q13772 614 aa11□□□□□ -0.65
CCDC88C-206ENST00000553437 WDR72Q3MJ13 1102 aa11□□□□□ -0.65
CCDC88C-206ENST00000553437 ZACNQ401N2 412 aa11□□□□□ -0.65
CCDC88C-206ENST00000553437 CFAP221Q4G0U5 840 aa11□□□□□ -0.65
CCDC88C-206ENST00000553437 COBLL1Q53SF7 1204 aa11□□□□□ -0.65
CCDC88C-206ENST00000553437 STXBP5Q5T5C0 1151 aa11□□□□□ -0.65
CCDC88C-206ENST00000553437 CEP135Q66GS9 1140 aa11□□□□□ -0.65
CCDC88C-206ENST00000553437 ELOA2Q8IYF1 753 aaPredicted RBP11□□□□□ -0.65
CCDC88C-206ENST00000553437 SMARCD2Q92925 531 aa11□□□□□ -0.65
CCDC88C-206ENST00000553437 RSPRY1Q96DX4 576 aa11□□□□□ -0.65
CCDC88C-206ENST00000553437 CCDC34Q96HJ3 373 aa11□□□□□ -0.65
CCDC88C-206ENST00000553437 GSDMAQ96QA5 445 aa11□□□□□ -0.65
CCDC88C-206ENST00000553437 MMS19Q96T76 1030 aa11□□□□□ -0.65
CCDC88C-206ENST00000553437 SYT15Q9BQS2 421 aa11□□□□□ -0.65
CCDC88C-206ENST00000553437 GPR88Q9GZN0 384 aa11□□□□□ -0.65
CCDC88C-206ENST00000553437 CRTAC1Q9NQ79 661 aa11□□□□□ -0.65
CCDC88C-206ENST00000553437 RMND1Q9NWS8 449 aa11□□□□□ -0.65
CCDC88C-206ENST00000553437 CDH9Q9ULB4 789 aa11□□□□□ -0.65
CCDC88C-206ENST00000553437 CA14Q9ULX7 337 aa11□□□□□ -0.65
CCDC88C-206ENST00000553437 FRMD4BQ9Y2L6 1034 aa11□□□□□ -0.65
CCDC88C-206ENST00000553437 ZDBF2Q9HCK1 2354 aa11□□□□□ -0.65
CCDC88C-206ENST00000553437 DOCK6Q96HP0 2047 aa11□□□□□ -0.65
CCDC88C-206ENST00000553437 DOCK8Q8NF50 2099 aa11□□□□□ -0.65
CCDC88C-206ENST00000553437 MYO10Q9HD67 2058 aa11□□□□□ -0.65
CCDC88C-206ENST00000553437 NCANO14594 1321 aa11□□□□□ -0.65
CCDC88C-206ENST00000553437 SPTBN4Q9H254 2564 aa10.99□□□□□ -0.65
CCDC88C-206ENST00000553437 PHACTR2O75167 634 aa10.99□□□□□ -0.65
CCDC88C-206ENST00000553437 FGF19O95750 216 aa10.99□□□□□ -0.65
CCDC88C-206ENST00000553437 F11P03951 625 aa10.99□□□□□ -0.65
CCDC88C-206ENST00000553437 PDGFRBP09619 1106 aa10.99□□□□□ -0.65
CCDC88C-206ENST00000553437 GABRR2P28476 465 aa10.99□□□□□ -0.65
CCDC88C-206ENST00000553437 GNL1P36915 607 aaPredicted RBP10.99□□□□□ -0.65
CCDC88C-206ENST00000553437 VIPR2P41587 438 aa10.99□□□□□ -0.65
CCDC88C-206ENST00000553437 MAGEA11P43364 429 aa10.99□□□□□ -0.65
CCDC88C-206ENST00000553437 VAMP7P51809 220 aa10.99□□□□□ -0.65
CCDC88C-206ENST00000553437 PSMC1P62191 440 aaKnown RBP10.99□□□□□ -0.65
CCDC88C-206ENST00000553437 ENPEPQ07075 957 aa10.99□□□□□ -0.65
CCDC88C-206ENST00000553437 TCF15Q12870 199 aa10.99□□□□□ -0.65
CCDC88C-206ENST00000553437 ADAM9Q13443 819 aa10.99□□□□□ -0.65
CCDC88C-206ENST00000553437 BIRC3Q13489 604 aa10.99□□□□□ -0.65
CCDC88C-206ENST00000553437 VEPH1Q14D04 833 aa10.99□□□□□ -0.65
CCDC88C-206ENST00000553437 DDR2Q16832 855 aa10.99□□□□□ -0.65
CCDC88C-206ENST00000553437 EDRF1Q3B7T1 1238 aa10.99□□□□□ -0.65
CCDC88C-206ENST00000553437 ZNF658Q5TYW1 1059 aaPredicted RBP10.99□□□□□ -0.65
CCDC88C-206ENST00000553437 SDHAF4Q5VUM1 108 aa10.99□□□□□ -0.65
CCDC88C-206ENST00000553437 PHLDB3Q6NSJ2 640 aa10.99□□□□□ -0.65
CCDC88C-206ENST00000553437 VITQ6UXI7 678 aa10.99□□□□□ -0.65
CCDC88C-206ENST00000553437 SV2AQ7L0J3 742 aa10.99□□□□□ -0.65
CCDC88C-206ENST00000553437 TMEM150AQ86TG1 271 aa10.99□□□□□ -0.65
CCDC88C-206ENST00000553437 STKLD1Q8NE28 680 aa10.99□□□□□ -0.65
CCDC88C-206ENST00000553437 FLCNQ8NFG4 579 aa10.99□□□□□ -0.65
CCDC88C-206ENST00000553437 ZSCAN18Q8TBC5 510 aaPredicted RBP10.99□□□□□ -0.65
CCDC88C-206ENST00000553437 MYCBPAPQ8TBZ2 947 aa10.99□□□□□ -0.65
CCDC88C-206ENST00000553437 FAM200AQ8TCP9 573 aa10.99□□□□□ -0.65
CCDC88C-206ENST00000553437 SYAP1Q96A49 352 aaPredicted RBP10.99□□□□□ -0.65
CCDC88C-206ENST00000553437 ELMO3Q96BJ8 720 aa10.99□□□□□ -0.65
CCDC88C-206ENST00000553437 FUBP3Q96I24 572 aaKnown RBP eCLIP10.99□□□□□ -0.65
CCDC88C-206ENST00000553437 SDCBP2Q9H190 292 aa10.99□□□□□ -0.65
CCDC88C-206ENST00000553437 ATXN3LQ9H3M9 355 aa10.99□□□□□ -0.65
CCDC88C-206ENST00000553437 MFSD1Q9H3U5 465 aa10.99□□□□□ -0.65
CCDC88C-206ENST00000553437 SMYD3Q9H7B4 428 aa10.99□□□□□ -0.65
CCDC88C-206ENST00000553437 ZFP14Q9HCL3 533 aa10.99□□□□□ -0.65
CCDC88C-206ENST00000553437 ARHGEF3Q9NR81 526 aa10.99□□□□□ -0.65
CCDC88C-206ENST00000553437 NXF1Q9UBU9 619 aaKnown RBP10.99□□□□□ -0.65
CCDC88C-206ENST00000553437 TSC2P49815 1807 aa10.99□□□□□ -0.65
CCDC88C-206ENST00000553437 ZNF318Q5VUA4 2279 aa10.98□□□□□ -0.65
CCDC88C-206ENST00000553437 SHISA7A6NL88 538 aa10.98□□□□□ -0.65
CCDC88C-206ENST00000553437 NOL4O94818 638 aa10.98□□□□□ -0.65
CCDC88C-206ENST00000553437 SMC2O95347 1197 aa10.98□□□□□ -0.65
CCDC88C-206ENST00000553437 AOC1P19801 751 aa10.98□□□□□ -0.65
CCDC88C-206ENST00000553437 RPL13P26373 211 aaKnown RBP10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms