RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 DARS2Q6PI48 645 aaKnown RBP5.89□□□□□ -1.47
LIMA1-215ENST00000552823 HOOK3Q86VS8 718 aa5.89□□□□□ -1.47
LIMA1-215ENST00000552823 ADAM32Q8TC27 787 aa5.89□□□□□ -1.47
LIMA1-215ENST00000552823 CLEC4CQ8WTT0 213 aa5.89□□□□□ -1.47
LIMA1-215ENST00000552823 TCP11Q8WWU5 503 aa5.89□□□□□ -1.47
LIMA1-215ENST00000552823 CFAP57Q96MR6 1250 aa5.89□□□□□ -1.47
LIMA1-215ENST00000552823 ACAP3Q96P50 834 aa5.89□□□□□ -1.47
LIMA1-215ENST00000552823 TMPRSS4Q9NRS4 437 aa5.89□□□□□ -1.47
LIMA1-215ENST00000552823 TUBGCP4Q9UGJ1 667 aa5.89□□□□□ -1.47
LIMA1-215ENST00000552823 SIX4Q9UIU6 781 aa5.89□□□□□ -1.47
LIMA1-215ENST00000552823 TTLL3Q9Y4R7 772 aa5.89□□□□□ -1.47
LIMA1-215ENST00000552823 A0A0G2JLL6 359 aaPredicted RBP5.89□□□□□ -1.47
LIMA1-215ENST00000552823 EXOC1LA0A1B0GW35 172 aa5.89□□□□□ -1.47
LIMA1-215ENST00000552823 TMEM120BA0PK00 339 aa5.89□□□□□ -1.47
LIMA1-215ENST00000552823 A8MXQ7 604 aa5.89□□□□□ -1.47
LIMA1-215ENST00000552823 ZBTB42B2RXF5 422 aa5.89□□□□□ -1.47
LIMA1-215ENST00000552823 TCP11X1B4DZS4 312 aa5.89□□□□□ -1.47
LIMA1-215ENST00000552823 E5RJQ4 531 aa5.89□□□□□ -1.47
LIMA1-215ENST00000552823 PODXLO00592 558 aa5.89□□□□□ -1.47
LIMA1-215ENST00000552823 RNF8O76064 485 aa5.89□□□□□ -1.47
LIMA1-215ENST00000552823 MICAL2O94851 1124 aa5.89□□□□□ -1.47
LIMA1-215ENST00000552823 ERBB2P04626 1255 aa5.89□□□□□ -1.47
LIMA1-215ENST00000552823 CETPP11597 493 aa5.89□□□□□ -1.47
LIMA1-215ENST00000552823 CCDC130P13994 396 aa5.89□□□□□ -1.47
LIMA1-215ENST00000552823 PECAM1P16284 738 aaPredicted RBP5.89□□□□□ -1.47
LIMA1-215ENST00000552823 TBXAS1P24557 533 aaPredicted RBP5.89□□□□□ -1.47
LIMA1-215ENST00000552823 ANXA13P27216 316 aa5.89□□□□□ -1.47
LIMA1-215ENST00000552823 EFNA5P52803 228 aa5.89□□□□□ -1.47
LIMA1-215ENST00000552823 YWHAGP61981 247 aaKnown RBP eCLIP5.89□□□□□ -1.47
LIMA1-215ENST00000552823 BYSLQ13895 437 aaKnown RBP5.89□□□□□ -1.47
LIMA1-215ENST00000552823 TMEM132DQ14C87 1099 aa5.89□□□□□ -1.47
LIMA1-215ENST00000552823 SIX1Q15475 284 aaPredicted RBP5.89□□□□□ -1.47
LIMA1-215ENST00000552823 SEPT7Q16181 437 aaKnown RBP5.89□□□□□ -1.47
LIMA1-215ENST00000552823 SPRED3Q2MJR0 410 aa5.89□□□□□ -1.47
LIMA1-215ENST00000552823 PRRT2Q7Z6L0 340 aaPredicted RBP5.89□□□□□ -1.47
LIMA1-215ENST00000552823 RXFP2Q8WXD0 754 aa5.89□□□□□ -1.47
LIMA1-215ENST00000552823 SPOCK2Q92563 424 aa5.89□□□□□ -1.47
LIMA1-215ENST00000552823 UPF1Q92900 1129 aaKnown RBP eCLIP5.89□□□□□ -1.47
LIMA1-215ENST00000552823 CD101Q93033 1021 aa5.89□□□□□ -1.47
LIMA1-215ENST00000552823 HVCN1Q96D96 273 aa5.89□□□□□ -1.47
LIMA1-215ENST00000552823 CFAP36Q96G28 342 aa5.89□□□□□ -1.47
LIMA1-215ENST00000552823 FAM167AQ96KS9 214 aa5.89□□□□□ -1.47
LIMA1-215ENST00000552823 PGLYRP2Q96PD5 576 aa5.89□□□□□ -1.47
LIMA1-215ENST00000552823 MRPL45Q9BRJ2 306 aaKnown RBP5.89□□□□□ -1.47
LIMA1-215ENST00000552823 NIFKQ9BYG3 293 aaKnown RBP5.89□□□□□ -1.47
LIMA1-215ENST00000552823 EPN3Q9H201 632 aa5.89□□□□□ -1.47
LIMA1-215ENST00000552823 DPEP3Q9H4B8 488 aa5.89□□□□□ -1.47
LIMA1-215ENST00000552823 NXF3Q9H4D5 531 aaKnown RBP5.89□□□□□ -1.47
LIMA1-215ENST00000552823 FGFR1OP2Q9NVK5 253 aa5.89□□□□□ -1.47
LIMA1-215ENST00000552823 DPP3Q9NY33 737 aa5.89□□□□□ -1.47
LIMA1-215ENST00000552823 CPSF3Q9UKF6 684 aaKnown RBP5.89□□□□□ -1.47
LIMA1-215ENST00000552823 CHMP2BQ9UQN3 213 aa5.89□□□□□ -1.47
LIMA1-215ENST00000552823 INPP5FQ9Y2H2 1132 aa5.89□□□□□ -1.47
LIMA1-215ENST00000552823 NEU2Q9Y3R4 380 aa5.89□□□□□ -1.47
LIMA1-215ENST00000552823 GOLGA4Q13439 2230 aaKnown RBP5.89□□□□□ -1.47
LIMA1-215ENST00000552823 SSC5DA1L4H1 1573 aa5.89□□□□□ -1.47
LIMA1-215ENST00000552823 RASA4BC9J798 803 aa5.89□□□□□ -1.47
LIMA1-215ENST00000552823 CLDN5O00501 218 aa5.89□□□□□ -1.47
LIMA1-215ENST00000552823 RASA4O43374 803 aa5.89□□□□□ -1.47
LIMA1-215ENST00000552823 CYP1A1P04798 512 aaPredicted RBP5.89□□□□□ -1.47
LIMA1-215ENST00000552823 CYP2C9P11712 490 aa5.89□□□□□ -1.47
LIMA1-215ENST00000552823 SMPD1P17405 629 aa5.89□□□□□ -1.47
LIMA1-215ENST00000552823 TFE3P19532 575 aaPredicted RBP5.89□□□□□ -1.47
LIMA1-215ENST00000552823 MIPP30301 263 aa5.89□□□□□ -1.47
LIMA1-215ENST00000552823 STX2P32856 288 aa5.89□□□□□ -1.47
LIMA1-215ENST00000552823 HUNKP57058 714 aa5.89□□□□□ -1.47
LIMA1-215ENST00000552823 MBTD1Q05BQ5 628 aa5.89□□□□□ -1.47
LIMA1-215ENST00000552823 PTPN11Q06124 597 aaPredicted RBP5.89□□□□□ -1.47
LIMA1-215ENST00000552823 ZNF252P-AS1Q0IIN9 211 aa5.89□□□□□ -1.47
LIMA1-215ENST00000552823 AUHQ13825 339 aaKnown RBP5.89□□□□□ -1.47
LIMA1-215ENST00000552823 GRIK4Q16099 956 aa5.89□□□□□ -1.47
LIMA1-215ENST00000552823 GOLGA7BQ2TAP0 167 aa5.89□□□□□ -1.47
LIMA1-215ENST00000552823 ANKRD22Q5VYY1 191 aa5.89□□□□□ -1.47
LIMA1-215ENST00000552823 TWF2Q6IBS0 349 aaKnown RBP5.89□□□□□ -1.47
LIMA1-215ENST00000552823 KDM7AQ6ZMT4 941 aa5.89□□□□□ -1.47
LIMA1-215ENST00000552823 SPOCD1Q6ZMY3 1216 aa5.89□□□□□ -1.47
LIMA1-215ENST00000552823 ENOSF1Q7L5Y1 443 aa5.89□□□□□ -1.47
LIMA1-215ENST00000552823 FASTKD5Q7L8L6 764 aaKnown RBP5.89□□□□□ -1.47
LIMA1-215ENST00000552823 PNMA8AQ86V59 439 aaPredicted RBP5.89□□□□□ -1.47
LIMA1-215ENST00000552823 BRI3BPQ8WY22 251 aa5.89□□□□□ -1.47
LIMA1-215ENST00000552823 LPPQ93052 612 aa5.89□□□□□ -1.47
LIMA1-215ENST00000552823 SNF8Q96H20 258 aa5.89□□□□□ -1.47
LIMA1-215ENST00000552823 XPO6Q96QU8 1125 aaKnown RBP5.89□□□□□ -1.47
LIMA1-215ENST00000552823 SGIP1Q9BQI5 828 aa5.89□□□□□ -1.47
LIMA1-215ENST00000552823 EPB41L4BQ9H329 900 aa5.89□□□□□ -1.47
LIMA1-215ENST00000552823 DHX35Q9H5Z1 703 aaKnown RBP5.89□□□□□ -1.47
LIMA1-215ENST00000552823 STAU2Q9NUL3 570 aaKnown RBP eCLIP5.89□□□□□ -1.47
LIMA1-215ENST00000552823 NINJ2Q9NZG7 142 aa5.89□□□□□ -1.47
LIMA1-215ENST00000552823 IP6K2Q9UHH9 426 aa5.89□□□□□ -1.47
LIMA1-215ENST00000552823 TSPAN16Q9UKR8 245 aa5.89□□□□□ -1.47
LIMA1-215ENST00000552823 MAD1L1Q9Y6D9 718 aa5.89□□□□□ -1.47
LIMA1-215ENST00000552823 MKI67P46013 3256 aaKnown RBP5.88□□□□□ -1.47
LIMA1-215ENST00000552823 TCRBV7S3A2A0A539 114 aa5.88□□□□□ -1.47
LIMA1-215ENST00000552823 MEIS3P2A8K0S8 358 aa5.88□□□□□ -1.47
LIMA1-215ENST00000552823 CXCL11O14625 94 aa5.88□□□□□ -1.47
LIMA1-215ENST00000552823 FSCN2O14926 492 aa5.88□□□□□ -1.47
LIMA1-215ENST00000552823 CSPG5O95196 566 aa5.88□□□□□ -1.47
LIMA1-215ENST00000552823 ATG7O95352 703 aa5.88□□□□□ -1.47
LIMA1-215ENST00000552823 SLC25A27O95847 323 aa5.88□□□□□ -1.47
LIMA1-215ENST00000552823 C6orf222P0C671 652 aaPredicted RBP5.88□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms