RNA–Protein interactions for RNA: ENST00000546304.1

PRKDC-211, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 2

Gene PRKDC, Length 589 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-211ENST00000546304 PARP2Q9UGN5 583 aa6.87□□□□□ -1.31
PRKDC-211ENST00000546304 CPSF3Q9UKF6 684 aaKnown RBP6.87□□□□□ -1.31
PRKDC-211ENST00000546304 SOX13Q9UN79 622 aa6.87□□□□□ -1.31
PRKDC-211ENST00000546304 TRAF3IP3Q9Y228 551 aa6.87□□□□□ -1.31
PRKDC-211ENST00000546304 GIT1Q9Y2X7 761 aa6.87□□□□□ -1.31
PRKDC-211ENST00000546304 VWA8A3KMH1 1905 aa6.87□□□□□ -1.31
PRKDC-211ENST00000546304 BICDL2A1A5D9 508 aa6.86□□□□□ -1.31
PRKDC-211ENST00000546304 SYCE3A1L190 88 aa6.86□□□□□ -1.31
PRKDC-211ENST00000546304 GOLGA8IPA6NC78 632 aa6.86□□□□□ -1.31
PRKDC-211ENST00000546304 ARL5CA6NH57 179 aa6.86□□□□□ -1.31
PRKDC-211ENST00000546304 GOLGA8JA6NMD2 632 aa6.86□□□□□ -1.31
PRKDC-211ENST00000546304 PTGESO14684 152 aa6.86□□□□□ -1.31
PRKDC-211ENST00000546304 MEFVO15553 781 aaPredicted RBP6.86□□□□□ -1.31
PRKDC-211ENST00000546304 EXOC3O60645 756 aa6.86□□□□□ -1.31
PRKDC-211ENST00000546304 OFD1O75665 1012 aa6.86□□□□□ -1.31
PRKDC-211ENST00000546304 LDHAP00338 332 aaKnown RBP6.86□□□□□ -1.31
PRKDC-211ENST00000546304 CA3P07451 260 aa6.86□□□□□ -1.31
PRKDC-211ENST00000546304 ADRB2P07550 413 aa6.86□□□□□ -1.31
PRKDC-211ENST00000546304 CCNE1P24864 410 aa6.86□□□□□ -1.31
PRKDC-211ENST00000546304 ACOT2P49753 483 aa6.86□□□□□ -1.31
PRKDC-211ENST00000546304 SMAD3P84022 425 aaKnown RBP6.86□□□□□ -1.31
PRKDC-211ENST00000546304 BTG3Q14201 252 aaPredicted RBP6.86□□□□□ -1.31
PRKDC-211ENST00000546304 MYBPC2Q14324 1141 aa6.86□□□□□ -1.31
PRKDC-211ENST00000546304 RAB30Q15771 203 aa6.86□□□□□ -1.31
PRKDC-211ENST00000546304 SNRNP35Q16560 246 aaKnown RBP6.86□□□□□ -1.31
PRKDC-211ENST00000546304 NFIL3Q16649 462 aa6.86□□□□□ -1.31
PRKDC-211ENST00000546304 ZSCAN23Q3MJ62 389 aa6.86□□□□□ -1.31
PRKDC-211ENST00000546304 LRIT3Q3SXY7 679 aa6.86□□□□□ -1.31
PRKDC-211ENST00000546304 NOMO2Q5JPE7 1267 aa6.86□□□□□ -1.31
PRKDC-211ENST00000546304 PEAR1Q5VY43 1037 aaPredicted RBP6.86□□□□□ -1.31
PRKDC-211ENST00000546304 CENPPQ6IPU0 288 aa6.86□□□□□ -1.31
PRKDC-211ENST00000546304 TTI2Q6NXR4 508 aa6.86□□□□□ -1.31
PRKDC-211ENST00000546304 FOXR2Q6PJQ5 311 aa6.86□□□□□ -1.31
PRKDC-211ENST00000546304 LRRC55Q6ZSA7 311 aa6.86□□□□□ -1.31
PRKDC-211ENST00000546304 ZC3H3Q8IXZ2 948 aaKnown RBP6.86□□□□□ -1.31
PRKDC-211ENST00000546304 ZSWIM2Q8NEG5 633 aa6.86□□□□□ -1.31
PRKDC-211ENST00000546304 TMEM174Q8WUU8 243 aa6.86□□□□□ -1.31
PRKDC-211ENST00000546304 ZNF689Q96CS4 500 aaPredicted RBP6.86□□□□□ -1.31
PRKDC-211ENST00000546304 MEGF10Q96KG7 1140 aa6.86□□□□□ -1.31
PRKDC-211ENST00000546304 FBXL18Q96ME1 805 aa6.86□□□□□ -1.31
PRKDC-211ENST00000546304 ACAP3Q96P50 834 aa6.86□□□□□ -1.31
PRKDC-211ENST00000546304 CASD1Q96PB1 797 aa6.86□□□□□ -1.31
PRKDC-211ENST00000546304 RAD9AQ99638 391 aa6.86□□□□□ -1.31
PRKDC-211ENST00000546304 PCIF1Q9H4Z3 704 aa6.86□□□□□ -1.31
PRKDC-211ENST00000546304 RPF1Q9H9Y2 349 aaKnown RBP6.86□□□□□ -1.31
PRKDC-211ENST00000546304 OSGEPQ9NPF4 335 aa6.86□□□□□ -1.31
PRKDC-211ENST00000546304 TBC1D13Q9NVG8 400 aa6.86□□□□□ -1.31
PRKDC-211ENST00000546304 ANO10Q9NW15 660 aa6.86□□□□□ -1.31
PRKDC-211ENST00000546304 PLAGL2Q9UPG8 496 aa6.86□□□□□ -1.31
PRKDC-211ENST00000546304 YBX2Q9Y2T7 364 aaKnown RBP6.86□□□□□ -1.31
PRKDC-211ENST00000546304 INSL6Q9Y581 213 aa6.86□□□□□ -1.31
PRKDC-211ENST00000546304 PCDHA11Q9Y5I1 949 aa6.86□□□□□ -1.31
PRKDC-211ENST00000546304 HSFX4A0A1B0GTS1 333 aaPredicted RBP6.85□□□□□ -1.31
PRKDC-211ENST00000546304 HSFX3A0A1B0GWH4 333 aaPredicted RBP6.85□□□□□ -1.31
PRKDC-211ENST00000546304 TTC26A0AVF1 554 aa6.85□□□□□ -1.31
PRKDC-211ENST00000546304 LINC01553A4QN01 128 aa6.85□□□□□ -1.31
PRKDC-211ENST00000546304 ZNF233A6NK53 670 aa6.85□□□□□ -1.31
PRKDC-211ENST00000546304 SLC16A3O15427 465 aaKnown RBP6.85□□□□□ -1.31
PRKDC-211ENST00000546304 B4GALT3O60512 393 aa6.85□□□□□ -1.31
PRKDC-211ENST00000546304 ZC3H11AO75152 810 aaKnown RBP eCLIP6.85□□□□□ -1.31
PRKDC-211ENST00000546304 AKAP3O75969 853 aa6.85□□□□□ -1.31
PRKDC-211ENST00000546304 LETM1O95202 739 aaPredicted RBP6.85□□□□□ -1.31
PRKDC-211ENST00000546304 IL18RAPO95256 599 aa6.85□□□□□ -1.31
PRKDC-211ENST00000546304 POMCP01189 267 aa6.85□□□□□ -1.31
PRKDC-211ENST00000546304 NFICP08651 508 aa6.85□□□□□ -1.31
PRKDC-211ENST00000546304 CCDC192P0DO97 292 aa6.85□□□□□ -1.31
PRKDC-211ENST00000546304 EPB41P11171 864 aaKnown RBP6.85□□□□□ -1.31
PRKDC-211ENST00000546304 MYOGP15173 224 aa6.85□□□□□ -1.31
PRKDC-211ENST00000546304 KCNE1P15382 129 aa6.85□□□□□ -1.31
PRKDC-211ENST00000546304 LAG3P18627 525 aa6.85□□□□□ -1.31
PRKDC-211ENST00000546304 RPL13P26373 211 aaKnown RBP6.85□□□□□ -1.31
PRKDC-211ENST00000546304 STX17P56962 302 aa6.85□□□□□ -1.31
PRKDC-211ENST00000546304 POU5F1Q01860 360 aaKnown RBP6.85□□□□□ -1.31
PRKDC-211ENST00000546304 RNASELQ05823 741 aaKnown RBP6.85□□□□□ -1.31
PRKDC-211ENST00000546304 CYP24A1Q07973 514 aa6.85□□□□□ -1.31
PRKDC-211ENST00000546304 DSC1Q08554 894 aa6.85□□□□□ -1.31
PRKDC-211ENST00000546304 TMEM132DQ14C87 1099 aa6.85□□□□□ -1.31
PRKDC-211ENST00000546304 SLC10A6Q3KNW5 377 aa6.85□□□□□ -1.31
PRKDC-211ENST00000546304 XKR4Q5GH76 650 aa6.85□□□□□ -1.31
PRKDC-211ENST00000546304 CRELD2Q6UXH1 353 aaPredicted RBP6.85□□□□□ -1.31
PRKDC-211ENST00000546304 C11orf57Q6ZUT1 292 aaPredicted RBP6.85□□□□□ -1.31
PRKDC-211ENST00000546304 GALNT12Q8IXK2 581 aa6.85□□□□□ -1.31
PRKDC-211ENST00000546304 EFCAB13Q8IY85 973 aa6.85□□□□□ -1.31
PRKDC-211ENST00000546304 FIBCD1Q8N539 461 aa6.85□□□□□ -1.31
PRKDC-211ENST00000546304 GSTCDQ8NEC7 633 aa6.85□□□□□ -1.31
PRKDC-211ENST00000546304 TIFAQ96CG3 184 aa6.85□□□□□ -1.31
PRKDC-211ENST00000546304 EEF2KMTQ96G04 330 aa6.85□□□□□ -1.31
PRKDC-211ENST00000546304 ZMAT2Q96NC0 199 aaKnown RBP6.85□□□□□ -1.31
PRKDC-211ENST00000546304 PPP1R10Q96QC0 940 aaKnown RBP6.85□□□□□ -1.31
PRKDC-211ENST00000546304 CXCL16Q9H2A7 254 aa6.85□□□□□ -1.31
PRKDC-211ENST00000546304 PLEKHA5Q9HAU0 1116 aa6.85□□□□□ -1.31
PRKDC-211ENST00000546304 KIAA1586Q9HCI6 787 aa6.85□□□□□ -1.31
PRKDC-211ENST00000546304 SLC38A7Q9NVC3 462 aa6.85□□□□□ -1.31
PRKDC-211ENST00000546304 DMAC2Q9NW81 257 aa6.85□□□□□ -1.31
PRKDC-211ENST00000546304 KCNK4Q9NYG8 393 aa6.85□□□□□ -1.31
PRKDC-211ENST00000546304 TUBGCP4Q9UGJ1 667 aa6.85□□□□□ -1.31
PRKDC-211ENST00000546304 RWDD2AQ9UIY3 292 aa6.85□□□□□ -1.31
PRKDC-211ENST00000546304 MSRAQ9UJ68 235 aa6.85□□□□□ -1.31
PRKDC-211ENST00000546304 FRMD4BQ9Y2L6 1034 aa6.85□□□□□ -1.31
PRKDC-211ENST00000546304 C2CD2Q9Y426 696 aa6.85□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms