RNA–Protein interactions for RNA: ENST00000544504.5

YBX3-215, Transcript of Y-box binding protein 3, human

TSL 3

Gene YBX3, Length 583 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
YBX3-215	ENST00000544504	SNX25	Q9H3E2	840 aa		10.14	□□□□□ -0.79
YBX3-215	ENST00000544504	GOLGA2P5	Q9HBQ8	144 aa		10.14	□□□□□ -0.79
YBX3-215	ENST00000544504	UTP3	Q9NQZ2	479 aa	Known RBP eCLIP	10.14	□□□□□ -0.79
YBX3-215	ENST00000544504	TLR9	Q9NR96	1032 aa		10.14	□□□□□ -0.79
YBX3-215	ENST00000544504	AAAS	Q9NRG9	546 aa		10.14	□□□□□ -0.79
YBX3-215	ENST00000544504	BARX2	Q9UMQ3	279 aa	Predicted RBP	10.14	□□□□□ -0.79
YBX3-215	ENST00000544504	FAN1	Q9Y2M0	1017 aa		10.14	□□□□□ -0.79
YBX3-215	ENST00000544504	RWDD3	Q9Y3V2	267 aa		10.14	□□□□□ -0.79
YBX3-215	ENST00000544504	CACNA1H	O95180	2353 aa		10.14	□□□□□ -0.79
YBX3-215	ENST00000544504	CYB561D2	O14569	222 aa		10.13	□□□□□ -0.79
YBX3-215	ENST00000544504	GRM6	O15303	877 aa		10.13	□□□□□ -0.79
YBX3-215	ENST00000544504	WEE2	P0C1S8	567 aa		10.13	□□□□□ -0.79
YBX3-215	ENST00000544504	LAG3	P18627	525 aa		10.13	□□□□□ -0.79
YBX3-215	ENST00000544504	TYMP	P19971	482 aa		10.13	□□□□□ -0.79
YBX3-215	ENST00000544504	ACO1	P21399	889 aa	Known RBP	10.13	□□□□□ -0.79
YBX3-215	ENST00000544504	TNFAIP3	P21580	790 aa		10.13	□□□□□ -0.79
YBX3-215	ENST00000544504	WARS	P23381	471 aa	Known RBP	10.13	□□□□□ -0.79
YBX3-215	ENST00000544504	PCSK1	P29120	753 aa		10.13	□□□□□ -0.79
YBX3-215	ENST00000544504	NBL1	P41271	181 aa		10.13	□□□□□ -0.79
YBX3-215	ENST00000544504	OR1G1	P47890	313 aa		10.13	□□□□□ -0.79
YBX3-215	ENST00000544504	ALDH7A1	P49419	539 aa	Known RBP	10.13	□□□□□ -0.79
YBX3-215	ENST00000544504	NDUFV1	P49821	464 aa		10.13	□□□□□ -0.79
YBX3-215	ENST00000544504	AFF1	P51825	1210 aa	Known RBP	10.13	□□□□□ -0.79
YBX3-215	ENST00000544504	CCZ1B	P86790	482 aa		10.13	□□□□□ -0.79
YBX3-215	ENST00000544504	CCZ1	P86791	482 aa	Predicted RBP	10.13	□□□□□ -0.79
YBX3-215	ENST00000544504	ARID5A	Q03989	594 aa		10.13	□□□□□ -0.79
YBX3-215	ENST00000544504	GOLGA8F	Q08AF8	430 aa		10.13	□□□□□ -0.79
YBX3-215	ENST00000544504	GOLGA8DP	Q0D2H9	430 aa		10.13	□□□□□ -0.79
YBX3-215	ENST00000544504	C10orf76	Q5T2E6	689 aa		10.13	□□□□□ -0.79
YBX3-215	ENST00000544504	WDR59	Q6PJI9	974 aa		10.13	□□□□□ -0.79
YBX3-215	ENST00000544504	TMEM270	Q6UE05	265 aa		10.13	□□□□□ -0.79
YBX3-215	ENST00000544504	SCARA5	Q6ZMJ2	495 aa		10.13	□□□□□ -0.79
YBX3-215	ENST00000544504	TRIM72	Q6ZMU5	477 aa		10.13	□□□□□ -0.79
YBX3-215	ENST00000544504	LIMS2	Q7Z4I7	341 aa		10.13	□□□□□ -0.79
YBX3-215	ENST00000544504	ADGRF2	Q8IZF7	708 aa		10.13	□□□□□ -0.79
YBX3-215	ENST00000544504	FIBCD1	Q8N539	461 aa		10.13	□□□□□ -0.79
YBX3-215	ENST00000544504	UBR7	Q8N806	425 aa		10.13	□□□□□ -0.79
YBX3-215	ENST00000544504	SMRP1	Q8NCR6	262 aa		10.13	□□□□□ -0.79
YBX3-215	ENST00000544504	KAT5	Q92993	513 aa		10.13	□□□□□ -0.79
YBX3-215	ENST00000544504	PPP2R3C	Q969Q6	453 aa		10.13	□□□□□ -0.79
YBX3-215	ENST00000544504	ZNF689	Q96CS4	500 aa	Predicted RBP	10.13	□□□□□ -0.79
YBX3-215	ENST00000544504	SUSD3	Q96L08	255 aa		10.13	□□□□□ -0.79
YBX3-215	ENST00000544504	SENP8	Q96LD8	212 aa		10.13	□□□□□ -0.79
YBX3-215	ENST00000544504	OXCT2	Q9BYC2	517 aa	Predicted RBP	10.13	□□□□□ -0.79
YBX3-215	ENST00000544504	GPR88	Q9GZN0	384 aa		10.13	□□□□□ -0.79
YBX3-215	ENST00000544504	IGFLR1	Q9H665	355 aa		10.13	□□□□□ -0.79
YBX3-215	ENST00000544504	NRDE2	Q9H7Z3	1164 aa		10.13	□□□□□ -0.79
YBX3-215	ENST00000544504	NHEJ1	Q9H9Q4	299 aa	Predicted RBP	10.13	□□□□□ -0.79
YBX3-215	ENST00000544504	AJAP1	Q9UKB5	411 aa	Predicted RBP	10.13	□□□□□ -0.79
YBX3-215	ENST00000544504	POLI	Q9UNA4	740 aa		10.13	□□□□□ -0.79
YBX3-215	ENST00000544504	CEP83	Q9Y592	693 aa		10.13	□□□□□ -0.79
YBX3-215	ENST00000544504	EPN1	Q9Y6I3	576 aa	Predicted RBP	10.13	□□□□□ -0.79
YBX3-215	ENST00000544504	SF3B1	O75533	1304 aa	Known RBP eCLIP	10.12	□□□□□ -0.79
YBX3-215	ENST00000544504	GOLGA6L9	A6NEM1	432 aa		10.12	□□□□□ -0.79
YBX3-215	ENST00000544504	EIF3CL	B5ME19	914 aa	Known RBP	10.12	□□□□□ -0.79
YBX3-215	ENST00000544504		M0QZQ0	153 aa		10.12	□□□□□ -0.79
YBX3-215	ENST00000544504	PPEF2	O14830	753 aa		10.12	□□□□□ -0.79
YBX3-215	ENST00000544504	SYN3	O14994	580 aa		10.12	□□□□□ -0.79
YBX3-215	ENST00000544504	LINC01565	O15544	149 aa		10.12	□□□□□ -0.79
YBX3-215	ENST00000544504	CYP26A1	O43174	497 aa		10.12	□□□□□ -0.79
YBX3-215	ENST00000544504	ZSCAN12	O43309	604 aa		10.12	□□□□□ -0.79
YBX3-215	ENST00000544504	GALR2	O43603	387 aa	Predicted RBP	10.12	□□□□□ -0.79
YBX3-215	ENST00000544504	CILP	O75339	1184 aa		10.12	□□□□□ -0.79
YBX3-215	ENST00000544504	TADA2A	O75478	443 aa		10.12	□□□□□ -0.79
YBX3-215	ENST00000544504	DDHD2	O94830	711 aa		10.12	□□□□□ -0.79
YBX3-215	ENST00000544504	CYP11A1	P05108	521 aa		10.12	□□□□□ -0.79
YBX3-215	ENST00000544504	CYP11B1	P15538	503 aa		10.12	□□□□□ -0.79
YBX3-215	ENST00000544504	CD58	P19256	250 aa		10.12	□□□□□ -0.79
YBX3-215	ENST00000544504	GTF2F1	P35269	517 aa	Known RBP eCLIP	10.12	□□□□□ -0.79
YBX3-215	ENST00000544504	PPM1A	P35813	382 aa		10.12	□□□□□ -0.79
YBX3-215	ENST00000544504	BMPR1A	P36894	532 aa		10.12	□□□□□ -0.79
YBX3-215	ENST00000544504	GNL1	P36915	607 aa	Predicted RBP	10.12	□□□□□ -0.79
YBX3-215	ENST00000544504	EIF4A3	P38919	411 aa	Known RBP	10.12	□□□□□ -0.79
YBX3-215	ENST00000544504	ZNF132	P52740	706 aa		10.12	□□□□□ -0.79
YBX3-215	ENST00000544504	BTG3	Q14201	252 aa	Predicted RBP	10.12	□□□□□ -0.79
YBX3-215	ENST00000544504	SOWAHA	Q2M3V2	549 aa		10.12	□□□□□ -0.79
YBX3-215	ENST00000544504	SPOUT1	Q5T280	376 aa	Known RBP	10.12	□□□□□ -0.79
YBX3-215	ENST00000544504	HGSNAT	Q68CP4	663 aa		10.12	□□□□□ -0.79
YBX3-215	ENST00000544504	ZNF280B	Q86YH2	543 aa		10.12	□□□□□ -0.79
YBX3-215	ENST00000544504	TMEM139	Q8IV31	216 aa		10.12	□□□□□ -0.79
YBX3-215	ENST00000544504	THEM5	Q8N1Q8	247 aa		10.12	□□□□□ -0.79
YBX3-215	ENST00000544504	OR6B3	Q8NGW1	331 aa		10.12	□□□□□ -0.79
YBX3-215	ENST00000544504	EPS8L1	Q8TE68	723 aa		10.12	□□□□□ -0.79
YBX3-215	ENST00000544504	TMEM176A	Q96HP8	235 aa		10.12	□□□□□ -0.79
YBX3-215	ENST00000544504	ZNF558	Q96NG5	402 aa		10.12	□□□□□ -0.79
YBX3-215	ENST00000544504	EIF3C	Q99613	913 aa	Known RBP	10.12	□□□□□ -0.79
YBX3-215	ENST00000544504	ARID3A	Q99856	593 aa		10.12	□□□□□ -0.79
YBX3-215	ENST00000544504	AGPAT1	Q99943	283 aa		10.12	□□□□□ -0.79
YBX3-215	ENST00000544504	HNRNPUL1	Q9BUJ2	856 aa	Known RBP eCLIP	10.12	□□□□□ -0.79
YBX3-215	ENST00000544504	PDCL3	Q9H2J4	239 aa		10.12	□□□□□ -0.79
YBX3-215	ENST00000544504	HAUS4	Q9H6D7	363 aa		10.12	□□□□□ -0.79
YBX3-215	ENST00000544504	SMYD3	Q9H7B4	428 aa		10.12	□□□□□ -0.79
YBX3-215	ENST00000544504	ARHGAP20	Q9P2F6	1191 aa		10.12	□□□□□ -0.79
YBX3-215	ENST00000544504	ADAM28	Q9UKQ2	775 aa		10.12	□□□□□ -0.79
YBX3-215	ENST00000544504	PCDHB8	Q9UN66	801 aa		10.12	□□□□□ -0.79
YBX3-215	ENST00000544504	ZKSCAN5	Q9Y2L8	839 aa		10.12	□□□□□ -0.79
YBX3-215	ENST00000544504	IGF2BP2	Q9Y6M1	599 aa	Known RBP eCLIP	10.12	□□□□□ -0.79
YBX3-215	ENST00000544504	KMT2E	Q8IZD2	1858 aa		10.12	□□□□□ -0.79
YBX3-215	ENST00000544504		A8MXQ7	604 aa		10.11	□□□□□ -0.79
YBX3-215	ENST00000544504	NRP1	O14786	923 aa		10.11	□□□□□ -0.79

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