RNA–Protein interactions for RNA: ENST00000543552.5

RTN3-213, Transcript of reticulon 3, humanhuman

TSL 4

Gene RTN3, Length 529 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-213ENST00000543552 MTMR12Q9C0I1 747 aa14.1□□□□□ -0.15
RTN3-213ENST00000543552 PCIF1Q9H4Z3 704 aa14.1□□□□□ -0.15
RTN3-213ENST00000543552 KIF9Q9HAQ2 790 aa14.1□□□□□ -0.15
RTN3-213ENST00000543552 LMAN1LQ9HAT1 526 aa14.1□□□□□ -0.15
RTN3-213ENST00000543552 PDE11AQ9HCR9 933 aa14.1□□□□□ -0.15
RTN3-213ENST00000543552 DDX43Q9NXZ2 648 aaKnown RBP14.1□□□□□ -0.15
RTN3-213ENST00000543552 L1RE1Q9UN81 338 aa14.1□□□□□ -0.15
RTN3-213ENST00000543552 SNX9Q9Y5X1 595 aa14.1□□□□□ -0.15
RTN3-213ENST00000543552 SLC38A8A6NNN8 435 aa14.09□□□□□ -0.15
RTN3-213ENST00000543552 PRPF40AO75400 957 aaKnown RBP14.09□□□□□ -0.15
RTN3-213ENST00000543552 SNRPFP62306 86 aaKnown RBP14.09□□□□□ -0.15
RTN3-213ENST00000543552 CYP4F8P98187 520 aa14.09□□□□□ -0.15
RTN3-213ENST00000543552 FZD5Q13467 585 aa14.09□□□□□ -0.15
RTN3-213ENST00000543552 E2F4Q16254 413 aa14.09□□□□□ -0.15
RTN3-213ENST00000543552 INTS6LQ5JSJ4 861 aaKnown RBP14.09□□□□□ -0.15
RTN3-213ENST00000543552 DGKKQ5KSL6 1271 aa14.09□□□□□ -0.15
RTN3-213ENST00000543552 FAM26FQ5R3K3 315 aa14.09□□□□□ -0.15
RTN3-213ENST00000543552 ATL3Q6DD88 541 aa14.09□□□□□ -0.15
RTN3-213ENST00000543552 DPH6Q7L8W6 267 aa14.09□□□□□ -0.15
RTN3-213ENST00000543552 HS2ST1Q7LGA3 356 aa14.09□□□□□ -0.15
RTN3-213ENST00000543552 ERMP1Q7Z2K6 904 aa14.09□□□□□ -0.15
RTN3-213ENST00000543552 LRRTM3Q86VH5 581 aa14.09□□□□□ -0.15
RTN3-213ENST00000543552 WDR49Q8IV35 697 aa14.09□□□□□ -0.15
RTN3-213ENST00000543552 CMTM8Q8IZV2 173 aa14.09□□□□□ -0.15
RTN3-213ENST00000543552 GPR161Q8N6U8 529 aaKnown RBP14.09□□□□□ -0.15
RTN3-213ENST00000543552 NELL1Q92832 810 aa14.09□□□□□ -0.15
RTN3-213ENST00000543552 RSPRY1Q96DX4 576 aa14.09□□□□□ -0.15
RTN3-213ENST00000543552 FUBP3Q96I24 572 aaKnown RBP eCLIP14.09□□□□□ -0.15
RTN3-213ENST00000543552 FGFBP2Q9BYJ0 223 aa14.09□□□□□ -0.15
RTN3-213ENST00000543552 EPC1Q9H2F5 836 aa14.09□□□□□ -0.15
RTN3-213ENST00000543552 INTS13Q9NVM9 706 aa14.09□□□□□ -0.15
RTN3-213ENST00000543552 FAM13BQ9NYF5 915 aa14.09□□□□□ -0.15
RTN3-213ENST00000543552 HSPBP1Q9NZL4 362 aa14.09□□□□□ -0.15
RTN3-213ENST00000543552 NCDNQ9UBB6 729 aa14.09□□□□□ -0.15
RTN3-213ENST00000543552 TFIP11Q9UBB9 837 aaKnown RBP14.09□□□□□ -0.15
RTN3-213ENST00000543552 OTOGLQ3ZCN5 2332 aa14.09□□□□□ -0.15
RTN3-213ENST00000543552 NCANO14594 1321 aa14.09□□□□□ -0.15
RTN3-213ENST00000543552 DCHS1Q96JQ0 3298 aa14.09□□□□□ -0.15
RTN3-213ENST00000543552 MYBPHLA2RUH7 354 aa14.08□□□□□ -0.16
RTN3-213ENST00000543552 SHISA7A6NL88 538 aa14.08□□□□□ -0.16
RTN3-213ENST00000543552 SPECC1L-ADORA2AF8WAN1 911 aa14.08□□□□□ -0.16
RTN3-213ENST00000543552 PRAMEF12O95522 483 aa14.08□□□□□ -0.16
RTN3-213ENST00000543552 ZSCAN22P10073 491 aaPredicted RBP14.08□□□□□ -0.16
RTN3-213ENST00000543552 CTHP32929 405 aa14.08□□□□□ -0.16
RTN3-213ENST00000543552 ME1P48163 572 aa14.08□□□□□ -0.16
RTN3-213ENST00000543552 WNT7BP56706 349 aa14.08□□□□□ -0.16
RTN3-213ENST00000543552 NLRP12P59046 1061 aa14.08□□□□□ -0.16
RTN3-213ENST00000543552 AMPD2Q01433 879 aa14.08□□□□□ -0.16
RTN3-213ENST00000543552 MAPRE1Q15691 268 aaKnown RBP14.08□□□□□ -0.16
RTN3-213ENST00000543552 ITPRIPL2Q3MIP1 535 aa14.08□□□□□ -0.16
RTN3-213ENST00000543552 CFAP221Q4G0U5 840 aa14.08□□□□□ -0.16
RTN3-213ENST00000543552 C4orf50Q6ZRC1 276 aa14.08□□□□□ -0.16
RTN3-213ENST00000543552 SPATA2LQ8IUW3 424 aaPredicted RBP14.08□□□□□ -0.16
RTN3-213ENST00000543552 SPEM1Q8N4L4 309 aa14.08□□□□□ -0.16
RTN3-213ENST00000543552 SUMF1Q8NBK3 374 aa14.08□□□□□ -0.16
RTN3-213ENST00000543552 ZSWIM2Q8NEG5 633 aa14.08□□□□□ -0.16
RTN3-213ENST00000543552 EXOC4Q96A65 974 aa14.08□□□□□ -0.16
RTN3-213ENST00000543552 TRMT2BQ96GJ1 504 aaKnown RBP14.08□□□□□ -0.16
RTN3-213ENST00000543552 HPDLQ96IR7 371 aa14.08□□□□□ -0.16
RTN3-213ENST00000543552 FNBP1Q96RU3 617 aa14.08□□□□□ -0.16
RTN3-213ENST00000543552 PI4K2AQ9BTU6 479 aa14.08□□□□□ -0.16
RTN3-213ENST00000543552 IL21Q9HBE4 155 aa14.08□□□□□ -0.16
RTN3-213ENST00000543552 CGNQ9P2M7 1197 aaKnown RBP14.08□□□□□ -0.16
RTN3-213ENST00000543552 CFAP45Q9UL16 551 aa14.08□□□□□ -0.16
RTN3-213ENST00000543552 RAB23Q9ULC3 237 aa14.08□□□□□ -0.16
RTN3-213ENST00000543552 SMG5Q9UPR3 1016 aaKnown RBP14.08□□□□□ -0.16
RTN3-213ENST00000543552 LILRB5O75023 590 aa14.07□□□□□ -0.16
RTN3-213ENST00000543552 CHRNB1P11230 501 aa14.07□□□□□ -0.16
RTN3-213ENST00000543552 CXCL12P48061 93 aa14.07□□□□□ -0.16
RTN3-213ENST00000543552 SNRNP35Q16560 246 aaKnown RBP14.07□□□□□ -0.16
RTN3-213ENST00000543552 CC2D1AQ6P1N0 951 aaPredicted RBP14.07□□□□□ -0.16
RTN3-213ENST00000543552 SHC4Q6S5L8 630 aa14.07□□□□□ -0.16
RTN3-213ENST00000543552 UNC13DQ70J99 1090 aa14.07□□□□□ -0.16
RTN3-213ENST00000543552 CBWD2Q8IUF1 395 aa14.07□□□□□ -0.16
RTN3-213ENST00000543552 KIAA2013Q8IYS2 634 aa14.07□□□□□ -0.16
RTN3-213ENST00000543552 SYNPOQ8N3V7 929 aa14.07□□□□□ -0.16
RTN3-213ENST00000543552 FSIP1Q8NA03 581 aa14.07□□□□□ -0.16
RTN3-213ENST00000543552 CXorf38Q8TB03 319 aa14.07□□□□□ -0.16
RTN3-213ENST00000543552 ZNF507Q8TCN5 953 aa14.07□□□□□ -0.16
RTN3-213ENST00000543552 CEP295NLQ96MC4 621 aa14.07□□□□□ -0.16
RTN3-213ENST00000543552 C7orf25Q9BPX7 421 aa14.07□□□□□ -0.16
RTN3-213ENST00000543552 SLC46A2Q9BY10 475 aa14.07□□□□□ -0.16
RTN3-213ENST00000543552 TDP1Q9NUW8 608 aa14.07□□□□□ -0.16
RTN3-213ENST00000543552 EHD2Q9NZN4 543 aa14.07□□□□□ -0.16
RTN3-213ENST00000543552 SIX4Q9UIU6 781 aa14.07□□□□□ -0.16
RTN3-213ENST00000543552 MAGED2Q9UNF1 606 aaPredicted RBP14.07□□□□□ -0.16
RTN3-213ENST00000543552 GABRDO14764 452 aa14.06□□□□□ -0.16
RTN3-213ENST00000543552 POLR2DO15514 142 aaKnown RBP14.06□□□□□ -0.16
RTN3-213ENST00000543552 NOL4O94818 638 aa14.06□□□□□ -0.16
RTN3-213ENST00000543552 F13A1P00488 732 aa14.06□□□□□ -0.16
RTN3-213ENST00000543552 HMGA1P17096 107 aaKnown RBP14.06□□□□□ -0.16
RTN3-213ENST00000543552 ACAT1P24752 427 aaKnown RBP14.06□□□□□ -0.16
RTN3-213ENST00000543552 MAGEA11P43364 429 aa14.06□□□□□ -0.16
RTN3-213ENST00000543552 PDE6CP51160 858 aa14.06□□□□□ -0.16
RTN3-213ENST00000543552 CDR1P51861 262 aa14.06□□□□□ -0.16
RTN3-213ENST00000543552 ZNF268Q14587 947 aaPredicted RBP14.06□□□□□ -0.16
RTN3-213ENST00000543552 SOWAHAQ2M3V2 549 aa14.06□□□□□ -0.16
RTN3-213ENST00000543552 TSSK4Q6SA08 328 aa14.06□□□□□ -0.16
RTN3-213ENST00000543552 EPM2AIP1Q7L775 607 aaPredicted RBP14.06□□□□□ -0.16
RTN3-213ENST00000543552 MON1AQ86VX9 555 aa14.06□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms