RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 CCDC43Q96MW1 224 aaKnown RBP5.23□□□□□ -1.57
LIMS1-214ENST00000542845 FNBP1Q96RU3 617 aa5.23□□□□□ -1.57
LIMS1-214ENST00000542845 OCSTAMPQ9BR26 566 aa5.23□□□□□ -1.57
LIMS1-214ENST00000542845 SLC6A16Q9GZN6 736 aa5.23□□□□□ -1.57
LIMS1-214ENST00000542845 ZMYND12Q9H0C1 365 aa5.23□□□□□ -1.57
LIMS1-214ENST00000542845 PRDM16Q9HAZ2 1276 aa5.23□□□□□ -1.57
LIMS1-214ENST00000542845 HPS4Q9NQG7 708 aa5.23□□□□□ -1.57
LIMS1-214ENST00000542845 RGL1Q9NZL6 768 aa5.23□□□□□ -1.57
LIMS1-214ENST00000542845 WRAP73Q9P2S5 460 aaPredicted RBP5.23□□□□□ -1.57
LIMS1-214ENST00000542845 AFF4Q9UHB7 1163 aaKnown RBP5.23□□□□□ -1.57
LIMS1-214ENST00000542845 PILRBQ9UKJ0 227 aa5.23□□□□□ -1.57
LIMS1-214ENST00000542845 KIAA1024Q9UPX6 916 aa5.23□□□□□ -1.57
LIMS1-214ENST00000542845 YIPF1Q9Y548 306 aa5.23□□□□□ -1.57
LIMS1-214ENST00000542845 TIMM13Q9Y5L4 95 aaPredicted RBP5.23□□□□□ -1.57
LIMS1-214ENST00000542845 RBM8AQ9Y5S9 174 aaKnown RBP5.23□□□□□ -1.57
LIMS1-214ENST00000542845 ZMYM2Q9UBW7 1377 aa5.23□□□□□ -1.57
LIMS1-214ENST00000542845 NAV2Q8IVL1 2488 aa5.23□□□□□ -1.57
LIMS1-214ENST00000542845 ASXL3Q9C0F0 2248 aa5.23□□□□□ -1.57
LIMS1-214ENST00000542845 KIAA1549LQ6ZVL6 1849 aa5.23□□□□□ -1.57
LIMS1-214ENST00000542845 TENM4Q6N022 2769 aa5.22□□□□□ -1.57
LIMS1-214ENST00000542845 A0A087WV48 116 aa5.22□□□□□ -1.57
LIMS1-214ENST00000542845 TMEM189-UBE2V1I3L0A0 370 aa5.22□□□□□ -1.57
LIMS1-214ENST00000542845 PLK4O00444 970 aa5.22□□□□□ -1.57
LIMS1-214ENST00000542845 PODXLO00592 558 aa5.22□□□□□ -1.57
LIMS1-214ENST00000542845 N4BP3O15049 544 aa5.22□□□□□ -1.57
LIMS1-214ENST00000542845 EDIL3O43854 480 aa5.22□□□□□ -1.57
LIMS1-214ENST00000542845 ALDH1A2O94788 518 aa5.22□□□□□ -1.57
LIMS1-214ENST00000542845 P4HBP07237 508 aaKnown RBP5.22□□□□□ -1.57
LIMS1-214ENST00000542845 SYPP08247 313 aa5.22□□□□□ -1.57
LIMS1-214ENST00000542845 SERPINF2P08697 491 aa5.22□□□□□ -1.57
LIMS1-214ENST00000542845 MAPK1P28482 360 aa5.22□□□□□ -1.57
LIMS1-214ENST00000542845 CDC27P30260 824 aa5.22□□□□□ -1.57
LIMS1-214ENST00000542845 MCM4P33991 863 aa5.22□□□□□ -1.57
LIMS1-214ENST00000542845 GJA4P35212 333 aa5.22□□□□□ -1.57
LIMS1-214ENST00000542845 ADD1P35611 737 aaKnown RBP5.22□□□□□ -1.57
LIMS1-214ENST00000542845 AVPR1AP37288 418 aa5.22□□□□□ -1.57
LIMS1-214ENST00000542845 P2RY2P41231 377 aa5.22□□□□□ -1.57
LIMS1-214ENST00000542845 USP11P51784 963 aa5.22□□□□□ -1.57
LIMS1-214ENST00000542845 EPHA5P54756 1037 aa5.22□□□□□ -1.57
LIMS1-214ENST00000542845 NLRP5P59047 1200 aa5.22□□□□□ -1.57
LIMS1-214ENST00000542845 AKAP17AQ02040 695 aaKnown RBP5.22□□□□□ -1.57
LIMS1-214ENST00000542845 SEMG2Q02383 582 aa5.22□□□□□ -1.57
LIMS1-214ENST00000542845 RPL6Q02878 288 aaKnown RBP5.22□□□□□ -1.57
LIMS1-214ENST00000542845 PRPF4BQ13523 1007 aaKnown RBP5.22□□□□□ -1.57
LIMS1-214ENST00000542845 PFKFB3Q16875 520 aaPredicted RBP5.22□□□□□ -1.57
LIMS1-214ENST00000542845 PLEKHG6Q3KR16 790 aa5.22□□□□□ -1.57
LIMS1-214ENST00000542845 Q4G0T1 1027 aa5.22□□□□□ -1.57
LIMS1-214ENST00000542845 LMBRD2Q68DH5 695 aaPredicted RBP5.22□□□□□ -1.57
LIMS1-214ENST00000542845 NCAPH2Q6IBW4 605 aa5.22□□□□□ -1.57
LIMS1-214ENST00000542845 PPP4R3AQ6IN85 833 aa5.22□□□□□ -1.57
LIMS1-214ENST00000542845 ZNF280DQ6N043 979 aa5.22□□□□□ -1.57
LIMS1-214ENST00000542845 APOA5Q6Q788 366 aa5.22□□□□□ -1.57
LIMS1-214ENST00000542845 DNAJB7Q7Z6W7 309 aaPredicted RBP5.22□□□□□ -1.57
LIMS1-214ENST00000542845 TMC8Q8IU68 726 aa5.22□□□□□ -1.57
LIMS1-214ENST00000542845 TEX2Q8IWB9 1127 aa5.22□□□□□ -1.57
LIMS1-214ENST00000542845 PHTF2Q8N3S3 785 aa5.22□□□□□ -1.57
LIMS1-214ENST00000542845 MAB21L3Q8N8X9 362 aa5.22□□□□□ -1.57
LIMS1-214ENST00000542845 DAGLBQ8NCG7 672 aa5.22□□□□□ -1.57
LIMS1-214ENST00000542845 CEP76Q8TAP6 659 aa5.22□□□□□ -1.57
LIMS1-214ENST00000542845 BICD2Q8TD16 824 aa5.22□□□□□ -1.57
LIMS1-214ENST00000542845 EZH1Q92800 747 aaPredicted RBP5.22□□□□□ -1.57
LIMS1-214ENST00000542845 ERLEC1Q96DZ1 483 aa5.22□□□□□ -1.57
LIMS1-214ENST00000542845 MRRFQ96E11 262 aaKnown RBP5.22□□□□□ -1.57
LIMS1-214ENST00000542845 TCEANC2Q96MN5 208 aa5.22□□□□□ -1.57
LIMS1-214ENST00000542845 UROC1Q96N76 676 aa5.22□□□□□ -1.57
LIMS1-214ENST00000542845 PPP1R10Q96QC0 940 aaKnown RBP5.22□□□□□ -1.57
LIMS1-214ENST00000542845 GCNAQ96QF7 691 aa5.22□□□□□ -1.57
LIMS1-214ENST00000542845 KIF2CQ99661 725 aa5.22□□□□□ -1.57
LIMS1-214ENST00000542845 ADPGKQ9BRR6 497 aa5.22□□□□□ -1.57
LIMS1-214ENST00000542845 LXNQ9BS40 222 aa5.22□□□□□ -1.57
LIMS1-214ENST00000542845 SLC46A2Q9BY10 475 aa5.22□□□□□ -1.57
LIMS1-214ENST00000542845 LRRC3Q9BY71 257 aa5.22□□□□□ -1.57
LIMS1-214ENST00000542845 POLR3FQ9H1D9 316 aaPredicted RBP5.22□□□□□ -1.57
LIMS1-214ENST00000542845 PDZD7Q9H5P4 517 aa5.22□□□□□ -1.57
LIMS1-214ENST00000542845 PRORYQ9H606 182 aa5.22□□□□□ -1.57
LIMS1-214ENST00000542845 TASP1Q9H6P5 420 aa5.22□□□□□ -1.57
LIMS1-214ENST00000542845 ZDHHC4Q9NPG8 344 aa5.22□□□□□ -1.57
LIMS1-214ENST00000542845 XPNPEP1Q9NQW7 623 aa5.22□□□□□ -1.57
LIMS1-214ENST00000542845 PRMT7Q9NVM4 692 aaPredicted RBP5.22□□□□□ -1.57
LIMS1-214ENST00000542845 OBP2AQ9NY56 170 aa5.22□□□□□ -1.57
LIMS1-214ENST00000542845 DNMT3LQ9UJW3 386 aa5.22□□□□□ -1.57
LIMS1-214ENST00000542845 BRPF3Q9ULD4 1205 aa5.22□□□□□ -1.57
LIMS1-214ENST00000542845 CCL26Q9Y258 94 aa5.22□□□□□ -1.57
LIMS1-214ENST00000542845 AK5Q9Y6K8 562 aa5.22□□□□□ -1.57
LIMS1-214ENST00000542845 PTPRDP23468 1912 aa5.22□□□□□ -1.57
LIMS1-214ENST00000542845 HELZP42694 1942 aaKnown RBP5.22□□□□□ -1.57
LIMS1-214ENST00000542845 KLF18A0A0U1RQI7 1052 aa5.21□□□□□ -1.58
LIMS1-214ENST00000542845 SMIM28A0A1B0GU29 152 aa5.21□□□□□ -1.58
LIMS1-214ENST00000542845 RRP8O43159 456 aaKnown RBP5.21□□□□□ -1.58
LIMS1-214ENST00000542845 AP5Z1O43299 807 aa5.21□□□□□ -1.58
LIMS1-214ENST00000542845 SLC28A2O43868 658 aa5.21□□□□□ -1.58
LIMS1-214ENST00000542845 WISP1O95388 367 aa5.21□□□□□ -1.58
LIMS1-214ENST00000542845 KLF8O95600 359 aaPredicted RBP5.21□□□□□ -1.58
LIMS1-214ENST00000542845 ATXN1LP0C7T5 689 aaKnown RBP5.21□□□□□ -1.58
LIMS1-214ENST00000542845 GLRA2P23416 452 aa5.21□□□□□ -1.58
LIMS1-214ENST00000542845 DPP6P42658 865 aa5.21□□□□□ -1.58
LIMS1-214ENST00000542845 YARSP54577 528 aaKnown RBP5.21□□□□□ -1.58
LIMS1-214ENST00000542845 CXADRP78310 365 aa5.21□□□□□ -1.58
LIMS1-214ENST00000542845 POU5F1BQ06416 359 aa5.21□□□□□ -1.58
LIMS1-214ENST00000542845 ZNF33AQ06730 810 aa5.21□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms