RNA–Protein interactions for RNA: ENST00000542238.5

RTN3-211, Transcript of reticulon 3, humanhuman

TSL 3

Gene RTN3, Length 735 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-211ENST00000542238 CSH1P0DML2 217 aa16.63■□□□□ 0.25
RTN3-211ENST00000542238 CSH2P0DML3 217 aa16.63■□□□□ 0.25
RTN3-211ENST00000542238 GJB2P29033 226 aa16.63■□□□□ 0.25
RTN3-211ENST00000542238 HOXC13P31276 330 aa16.63■□□□□ 0.25
RTN3-211ENST00000542238 LONP1P36776 959 aaKnown RBP16.63■□□□□ 0.25
RTN3-211ENST00000542238 PNPLA4P41247 253 aa16.63■□□□□ 0.25
RTN3-211ENST00000542238 RAP1GAPP47736 663 aa16.63■□□□□ 0.25
RTN3-211ENST00000542238 POSTNQ15063 836 aa16.63■□□□□ 0.25
RTN3-211ENST00000542238 SF3A2Q15428 464 aaKnown RBP16.63■□□□□ 0.25
RTN3-211ENST00000542238 NFE2Q16621 373 aaPredicted RBP16.63■□□□□ 0.25
RTN3-211ENST00000542238 ZC2HC1CQ53FD0 456 aaPredicted RBP16.63■□□□□ 0.25
RTN3-211ENST00000542238 TXNDC8Q6A555 127 aa16.63■□□□□ 0.25
RTN3-211ENST00000542238 FSTL4Q6MZW2 842 aa16.63■□□□□ 0.25
RTN3-211ENST00000542238 PKN3Q6P5Z2 889 aa16.63■□□□□ 0.25
RTN3-211ENST00000542238 NT5DC4Q86YG4 428 aa16.63■□□□□ 0.25
RTN3-211ENST00000542238 CAMKK1Q8N5S9 505 aa16.63■□□□□ 0.25
RTN3-211ENST00000542238 KRI1Q8N9T8 703 aaKnown RBP16.63■□□□□ 0.25
RTN3-211ENST00000542238 POMGNT1Q8WZA1 660 aa16.63■□□□□ 0.25
RTN3-211ENST00000542238 LARP4BQ92615 738 aaKnown RBP16.63■□□□□ 0.25
RTN3-211ENST00000542238 USP13Q92995 863 aaPredicted RBP16.63■□□□□ 0.25
RTN3-211ENST00000542238 ST6GALNAC4Q9H4F1 302 aa16.63■□□□□ 0.25
RTN3-211ENST00000542238 HPS4Q9NQG7 708 aa16.63■□□□□ 0.25
RTN3-211ENST00000542238 MAGED2Q9UNF1 606 aaPredicted RBP16.63■□□□□ 0.25
RTN3-211ENST00000542238 CCL26Q9Y258 94 aa16.63■□□□□ 0.25
RTN3-211ENST00000542238 STYXL1Q9Y6J8 313 aa16.63■□□□□ 0.25
RTN3-211ENST00000542238 EML5Q05BV3 1969 aa16.63■□□□□ 0.25
RTN3-211ENST00000542238 TISP43B9A030 160 aa16.62■□□□□ 0.25
RTN3-211ENST00000542238 TULP1O00294 542 aaPredicted RBP16.62■□□□□ 0.25
RTN3-211ENST00000542238 PRPF40AO75400 957 aaKnown RBP16.62■□□□□ 0.25
RTN3-211ENST00000542238 HMGA1P17096 107 aaKnown RBP16.62■□□□□ 0.25
RTN3-211ENST00000542238 DRD1P21728 446 aa16.62■□□□□ 0.25
RTN3-211ENST00000542238 KARSQ15046 597 aaKnown RBP16.62■□□□□ 0.25
RTN3-211ENST00000542238 PDGFRLQ15198 375 aa16.62■□□□□ 0.25
RTN3-211ENST00000542238 RABEP1Q15276 862 aa16.62■□□□□ 0.25
RTN3-211ENST00000542238 CCDC6Q16204 474 aa16.62■□□□□ 0.25
RTN3-211ENST00000542238 TRIM68Q6AZZ1 485 aa16.62■□□□□ 0.25
RTN3-211ENST00000542238 TMEM150AQ86TG1 271 aa16.62■□□□□ 0.25
RTN3-211ENST00000542238 KBTBD6Q86V97 674 aa16.62■□□□□ 0.25
RTN3-211ENST00000542238 MON1AQ86VX9 555 aa16.62■□□□□ 0.25
RTN3-211ENST00000542238 LRRC15Q8TF66 581 aa16.62■□□□□ 0.25
RTN3-211ENST00000542238 FIZ1Q96SL8 496 aa16.62■□□□□ 0.25
RTN3-211ENST00000542238 PI4K2AQ9BTU6 479 aa16.62■□□□□ 0.25
RTN3-211ENST00000542238 UXTQ9UBK9 157 aaPredicted RBP16.62■□□□□ 0.25
RTN3-211ENST00000542238 PCDHGA5Q9Y5G8 931 aa16.62■□□□□ 0.25
RTN3-211ENST00000542238 OTOL1A6NHN0 477 aaPredicted RBP16.61■□□□□ 0.25
RTN3-211ENST00000542238 RNF40O75150 1001 aa16.61■□□□□ 0.25
RTN3-211ENST00000542238 DDIT3P35638 169 aa16.61■□□□□ 0.25
RTN3-211ENST00000542238 RPL10AP62906 217 aaKnown RBP16.61■□□□□ 0.25
RTN3-211ENST00000542238 ZNF268Q14587 947 aaPredicted RBP16.61■□□□□ 0.25
RTN3-211ENST00000542238 FBXO43Q4G163 708 aa16.61■□□□□ 0.25
RTN3-211ENST00000542238 EFCAB13Q8IY85 973 aa16.61■□□□□ 0.25
RTN3-211ENST00000542238 CPA6Q8N4T0 437 aa16.61■□□□□ 0.25
RTN3-211ENST00000542238 HVCN1Q96D96 273 aa16.61■□□□□ 0.25
RTN3-211ENST00000542238 ZC3H10Q96K80 434 aaKnown RBP16.61■□□□□ 0.25
RTN3-211ENST00000542238 P2RY13Q9BPV8 354 aa16.61■□□□□ 0.25
RTN3-211ENST00000542238 ANGPTL2Q9UKU9 493 aa16.61■□□□□ 0.25
RTN3-211ENST00000542238 USP24Q9UPU5 2620 aa16.61■□□□□ 0.25
RTN3-211ENST00000542238 HUS1O60921 280 aa16.6■□□□□ 0.25
RTN3-211ENST00000542238 EGFP01133 1207 aa16.6■□□□□ 0.25
RTN3-211ENST00000542238 ARSAP15289 507 aa16.6■□□□□ 0.25
RTN3-211ENST00000542238 GALK1P51570 392 aa16.6■□□□□ 0.25
RTN3-211ENST00000542238 TFAMQ00059 246 aaKnown RBP16.6■□□□□ 0.25
RTN3-211ENST00000542238 MYL7Q01449 175 aa16.6■□□□□ 0.25
RTN3-211ENST00000542238 STPG1Q5TH74 334 aa16.6■□□□□ 0.25
RTN3-211ENST00000542238 CRELD2Q6UXH1 353 aaPredicted RBP16.6■□□□□ 0.25
RTN3-211ENST00000542238 ZNF720Q7Z2F6 126 aa16.6■□□□□ 0.25
RTN3-211ENST00000542238 CACTINQ8WUQ7 758 aaKnown RBP16.6■□□□□ 0.25
RTN3-211ENST00000542238 LEO1Q8WVC0 666 aaPredicted RBP16.6■□□□□ 0.25
RTN3-211ENST00000542238 TMX3Q96JJ7 454 aa16.6■□□□□ 0.25
RTN3-211ENST00000542238 ACBD6Q9BR61 282 aa16.6■□□□□ 0.25
RTN3-211ENST00000542238 ABCB6Q9NP58 842 aa16.6■□□□□ 0.25
RTN3-211ENST00000542238 VPS45Q9NRW7 570 aa16.6■□□□□ 0.25
RTN3-211ENST00000542238 TMLHEQ9NVH6 421 aa16.6■□□□□ 0.25
RTN3-211ENST00000542238 EXOC7Q9UPT5 735 aa16.6■□□□□ 0.25
RTN3-211ENST00000542238 GJA4P35212 333 aa16.59■□□□□ 0.25
RTN3-211ENST00000542238 MPLP40238 635 aa16.59■□□□□ 0.25
RTN3-211ENST00000542238 GPR15P49685 360 aa16.59■□□□□ 0.25
RTN3-211ENST00000542238 MTF1Q14872 753 aa16.59■□□□□ 0.25
RTN3-211ENST00000542238 ELF2Q15723 593 aa16.59■□□□□ 0.25
RTN3-211ENST00000542238 DDR2Q16832 855 aa16.59■□□□□ 0.25
RTN3-211ENST00000542238 PLA2G2CQ5R387 149 aa16.59■□□□□ 0.25
RTN3-211ENST00000542238 N4BP2L1Q5TBK1 243 aaPredicted RBP16.59■□□□□ 0.25
RTN3-211ENST00000542238 LARP1BQ659C4 914 aaKnown RBP16.59■□□□□ 0.25
RTN3-211ENST00000542238 SFR1Q86XK3 245 aa16.59■□□□□ 0.25
RTN3-211ENST00000542238 TMEM86AQ8N2M4 240 aa16.59■□□□□ 0.25
RTN3-211ENST00000542238 PDCL2Q8N4E4 241 aa16.59■□□□□ 0.25
RTN3-211ENST00000542238 TTC16Q8NEE8 873 aa16.59■□□□□ 0.25
RTN3-211ENST00000542238 ATP2A3Q93084 1043 aa16.59■□□□□ 0.25
RTN3-211ENST00000542238 CHFRQ96EP1 664 aa16.59■□□□□ 0.25
RTN3-211ENST00000542238 TRMT2BQ96GJ1 504 aaKnown RBP16.59■□□□□ 0.25
RTN3-211ENST00000542238 HHIPQ96QV1 700 aa16.59■□□□□ 0.25
RTN3-211ENST00000542238 ECT2Q9H8V3 914 aa16.59■□□□□ 0.25
RTN3-211ENST00000542238 MRPL44Q9H9J2 332 aaKnown RBP16.59■□□□□ 0.25
RTN3-211ENST00000542238 TRPC7Q9HCX4 862 aa16.59■□□□□ 0.25
RTN3-211ENST00000542238 DUS2Q9NX74 493 aaKnown RBP16.59■□□□□ 0.25
RTN3-211ENST00000542238 DDX43Q9NXZ2 648 aaKnown RBP16.59■□□□□ 0.25
RTN3-211ENST00000542238 AGAP1Q9UPQ3 857 aa16.59■□□□□ 0.25
RTN3-211ENST00000542238 SMC3Q9UQE7 1217 aa16.59■□□□□ 0.25
RTN3-211ENST00000542238 TRAV19A0A0A6YYK7 116 aa16.58■□□□□ 0.24
RTN3-211ENST00000542238 TM4SF5O14894 197 aa16.58■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms