RNA–Protein interactions for RNA: ENST00000541410.1

CLIP1-216, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,379 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-216ENST00000541410 VRTNQ9H8Y1 702 aa15.35■□□□□ 0.05
CLIP1-216ENST00000541410 IGHA2P01877 340 aa15.35■□□□□ 0.05
CLIP1-216ENST00000541410 ELNP15502 786 aa15.35■□□□□ 0.05
CLIP1-216ENST00000541410 HSPA6P17066 643 aa15.35■□□□□ 0.05
CLIP1-216ENST00000541410 SOX4Q06945 474 aaPredicted RBP15.35■□□□□ 0.05
CLIP1-216ENST00000541410 DHX9Q08211 1270 aaKnown RBP15.35■□□□□ 0.05
CLIP1-216ENST00000541410 NNTQ13423 1086 aa15.35■□□□□ 0.05
CLIP1-216ENST00000541410 DHX34Q14147 1143 aaKnown RBP15.35■□□□□ 0.05
CLIP1-216ENST00000541410 SKIDA1Q1XH10 827 aa15.35■□□□□ 0.05
CLIP1-216ENST00000541410 PPP1R15BQ5SWA1 713 aa15.35■□□□□ 0.05
CLIP1-216ENST00000541410 UBXN11Q5T124 520 aa15.35■□□□□ 0.05
CLIP1-216ENST00000541410 PPP1R26Q5T8A7 1209 aaPredicted RBP15.35■□□□□ 0.05
CLIP1-216ENST00000541410 GDF6Q6KF10 455 aaPredicted RBP15.35■□□□□ 0.05
CLIP1-216ENST00000541410 SEC14L1Q92503 715 aa15.35■□□□□ 0.05
CLIP1-216ENST00000541410 ZFP42Q96MM3 310 aa15.35■□□□□ 0.05
CLIP1-216ENST00000541410 KATNAL1Q9BW62 490 aa15.35■□□□□ 0.05
CLIP1-216ENST00000541410 PLVAPQ9BX97 442 aa15.35■□□□□ 0.05
CLIP1-216ENST00000541410 DPEP3Q9H4B8 488 aa15.35■□□□□ 0.05
CLIP1-216ENST00000541410 ZWILCHQ9H900 591 aa15.35■□□□□ 0.05
CLIP1-216ENST00000541410 PCYOX1Q9UHG3 505 aa15.35■□□□□ 0.05
CLIP1-216ENST00000541410 TSPAN16Q9UKR8 245 aa15.35■□□□□ 0.05
CLIP1-216ENST00000541410 PLAAQ9Y263 795 aa15.35■□□□□ 0.05
CLIP1-216ENST00000541410 ATP8A1Q9Y2Q0 1164 aa15.35■□□□□ 0.05
CLIP1-216ENST00000541410 RALGAPA2Q2PPJ7 1873 aa15.34■□□□□ 0.05
CLIP1-216ENST00000541410 SMIM28A0A1B0GU29 152 aa15.34■□□□□ 0.05
CLIP1-216ENST00000541410 ERICH4A6NGS2 130 aa15.34■□□□□ 0.05
CLIP1-216ENST00000541410 DUSP11O75319 330 aaKnown RBP15.34■□□□□ 0.05
CLIP1-216ENST00000541410 PDGFRBP09619 1106 aa15.34■□□□□ 0.05
CLIP1-216ENST00000541410 CYBAP13498 195 aa15.34■□□□□ 0.05
CLIP1-216ENST00000541410 PSMA2P25787 234 aa15.34■□□□□ 0.05
CLIP1-216ENST00000541410 GPD2P43304 727 aa15.34■□□□□ 0.05
CLIP1-216ENST00000541410 PDCLQ13371 301 aa15.34■□□□□ 0.05
CLIP1-216ENST00000541410 PPP1R7Q15435 360 aa15.34■□□□□ 0.05
CLIP1-216ENST00000541410 CLUL1Q15846 466 aa15.34■□□□□ 0.05
CLIP1-216ENST00000541410 ZBTB6Q15916 424 aa15.34■□□□□ 0.05
CLIP1-216ENST00000541410 RAB6CQ53S08 254 aa15.34■□□□□ 0.05
CLIP1-216ENST00000541410 XYLT1Q86Y38 959 aa15.34■□□□□ 0.05
CLIP1-216ENST00000541410 IQCKQ8N0W5 287 aa15.34■□□□□ 0.05
CLIP1-216ENST00000541410 SH2D3CQ8N5H7 860 aa15.34■□□□□ 0.05
CLIP1-216ENST00000541410 GOLGA6L1Q8N7Z2 621 aa15.34■□□□□ 0.05
CLIP1-216ENST00000541410 OR6B3Q8NGW1 331 aa15.34■□□□□ 0.05
CLIP1-216ENST00000541410 HAUS1Q96CS2 278 aa15.34■□□□□ 0.05
CLIP1-216ENST00000541410 CCDC114Q96M63 670 aa15.34■□□□□ 0.05
CLIP1-216ENST00000541410 NT5C1AQ9BXI3 368 aa15.34■□□□□ 0.05
CLIP1-216ENST00000541410 OSBPL8Q9BZF1 889 aa15.34■□□□□ 0.05
CLIP1-216ENST00000541410 RAB6CQ9H0N0 254 aa15.34■□□□□ 0.05
CLIP1-216ENST00000541410 LHX5Q9H2C1 402 aa15.34■□□□□ 0.05
CLIP1-216ENST00000541410 CYP3A43Q9HB55 503 aa15.34■□□□□ 0.05
CLIP1-216ENST00000541410 FAM114A2Q9NRY5 505 aa15.34■□□□□ 0.05
CLIP1-216ENST00000541410 IPPQ9Y573 584 aa15.34■□□□□ 0.05
CLIP1-216ENST00000541410 SPTLC1O15269 473 aa15.34■□□□□ 0.05
CLIP1-216ENST00000541410 PSTPIP1O43586 416 aa15.34■□□□□ 0.05
CLIP1-216ENST00000541410 KRT1P04264 644 aa15.34■□□□□ 0.05
CLIP1-216ENST00000541410 LMAN1P49257 510 aa15.34■□□□□ 0.05
CLIP1-216ENST00000541410 FCGRTP55899 365 aa15.34■□□□□ 0.05
CLIP1-216ENST00000541410 CDC42EP1Q00587 391 aa15.34■□□□□ 0.05
CLIP1-216ENST00000541410 CYP1B1Q16678 543 aa15.34■□□□□ 0.05
CLIP1-216ENST00000541410 TTMPQ5BVD1 217 aa15.34■□□□□ 0.05
CLIP1-216ENST00000541410 UBAP2Q5T6F2 1119 aaKnown RBP15.34■□□□□ 0.05
CLIP1-216ENST00000541410 C9orf57Q5W0N0 161 aa15.34■□□□□ 0.05
CLIP1-216ENST00000541410 ALKAL1Q6UXT8 129 aa15.34■□□□□ 0.05
CLIP1-216ENST00000541410 FAM228AQ86W67 206 aa15.34■□□□□ 0.05
CLIP1-216ENST00000541410 ARFGAP1Q8N6T3 406 aa15.34■□□□□ 0.05
CLIP1-216ENST00000541410 BEST2Q8NFU1 509 aa15.34■□□□□ 0.05
CLIP1-216ENST00000541410 RAPGEF5Q92565 580 aa15.34■□□□□ 0.05
CLIP1-216ENST00000541410 FMO2Q99518 471 aa15.34■□□□□ 0.05
CLIP1-216ENST00000541410 CENPHQ9H3R5 247 aa15.34■□□□□ 0.05
CLIP1-216ENST00000541410 PLEKHA5Q9HAU0 1116 aa15.34■□□□□ 0.05
CLIP1-216ENST00000541410 LRRC4CQ9HCJ2 640 aa15.34■□□□□ 0.05
CLIP1-216ENST00000541410 RASAL2Q9UJF2 1139 aa15.34■□□□□ 0.05
CLIP1-216ENST00000541410 PDCD11Q14690 1871 aaKnown RBP15.34■□□□□ 0.05
CLIP1-216ENST00000541410 FAM187AA6NFU0 413 aa15.33■□□□□ 0.04
CLIP1-216ENST00000541410 VDRP11473 427 aa15.33■□□□□ 0.04
CLIP1-216ENST00000541410 CCND3P30281 292 aaPredicted RBP15.33■□□□□ 0.04
CLIP1-216ENST00000541410 HSPA9P38646 679 aaKnown RBP15.33■□□□□ 0.04
CLIP1-216ENST00000541410 AFF1P51825 1210 aaKnown RBP15.33■□□□□ 0.04
CLIP1-216ENST00000541410 CRYBB1P53674 252 aaPredicted RBP15.33■□□□□ 0.04
CLIP1-216ENST00000541410 KRT17Q04695 432 aa15.33■□□□□ 0.04
CLIP1-216ENST00000541410 INCA1Q0VD86 236 aa15.33■□□□□ 0.04
CLIP1-216ENST00000541410 PPP2R5EQ16537 467 aa15.33■□□□□ 0.04
CLIP1-216ENST00000541410 GOLGA7BQ2TAP0 167 aa15.33■□□□□ 0.04
CLIP1-216ENST00000541410 SH3PXD2AQ5TCZ1 1133 aa15.33■□□□□ 0.04
CLIP1-216ENST00000541410 ZDHHC24Q6UX98 284 aa15.33■□□□□ 0.04
CLIP1-216ENST00000541410 MFSD7Q6UXD7 560 aa15.33■□□□□ 0.04
CLIP1-216ENST00000541410 CD302Q8IX05 232 aa15.33■□□□□ 0.04
CLIP1-216ENST00000541410 SMG8Q8ND04 991 aaKnown RBP15.33■□□□□ 0.04
CLIP1-216ENST00000541410 ZDHHC18Q9NUE0 388 aa15.33■□□□□ 0.04
CLIP1-216ENST00000541410 GRHL1Q9NZI5 618 aa15.33■□□□□ 0.04
CLIP1-216ENST00000541410 PCSK1NQ9UHG2 260 aa15.33■□□□□ 0.04
CLIP1-216ENST00000541410 Q9Y3F1 56 aa15.33■□□□□ 0.04
CLIP1-216ENST00000541410 CDY2AQ9Y6F7 541 aa15.33■□□□□ 0.04
CLIP1-216ENST00000541410 LRRD1A4D1F6 860 aa15.33■□□□□ 0.04
CLIP1-216ENST00000541410 E5RJQ4 531 aa15.33■□□□□ 0.04
CLIP1-216ENST00000541410 LMO2P25791 158 aa15.33■□□□□ 0.04
CLIP1-216ENST00000541410 TM4SF4P48230 202 aa15.33■□□□□ 0.04
CLIP1-216ENST00000541410 CACNB2Q08289 660 aaPredicted RBP15.33■□□□□ 0.04
CLIP1-216ENST00000541410 CNGA2Q16280 664 aa15.33■□□□□ 0.04
CLIP1-216ENST00000541410 CCDC142Q17RM4 750 aa15.33■□□□□ 0.04
CLIP1-216ENST00000541410 SOWAHAQ2M3V2 549 aa15.33■□□□□ 0.04
CLIP1-216ENST00000541410 FAM102AQ5T9C2 384 aaPredicted RBP15.33■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms