RNA–Protein interactions for RNA: ENST00000541108.1

CLIP1-215, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 1,658 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-215ENST00000541108 NRDE2Q9H7Z3 1164 aa18.8■□□□□ 0.6
CLIP1-215ENST00000541108 DDX43Q9NXZ2 648 aaKnown RBP18.8■□□□□ 0.6
CLIP1-215ENST00000541108 CTTNBP2NLQ9P2B4 639 aa18.8■□□□□ 0.6
CLIP1-215ENST00000541108 CNOT8Q9UFF9 292 aaKnown RBP18.8■□□□□ 0.6
CLIP1-215ENST00000541108 PRKAG2Q9UGJ0 569 aa18.8■□□□□ 0.6
CLIP1-215ENST00000541108 MKI67P46013 3256 aaKnown RBP18.8■□□□□ 0.6
CLIP1-215ENST00000541108 B4GALT3O60512 393 aa18.79■□□□□ 0.6
CLIP1-215ENST00000541108 DGKIO75912 1065 aa18.79■□□□□ 0.6
CLIP1-215ENST00000541108 AMHP03971 560 aa18.79■□□□□ 0.6
CLIP1-215ENST00000541108 PCSK1P29120 753 aa18.79■□□□□ 0.6
CLIP1-215ENST00000541108 SSTR3P32745 418 aaPredicted RBP18.79■□□□□ 0.6
CLIP1-215ENST00000541108 OR1G1P47890 313 aa18.79■□□□□ 0.6
CLIP1-215ENST00000541108 PTP4A2Q12974 167 aa18.79■□□□□ 0.6
CLIP1-215ENST00000541108 DENND1BQ6P3S1 775 aa18.79■□□□□ 0.6
CLIP1-215ENST00000541108 ERICH1Q86X53 443 aa18.79■□□□□ 0.6
CLIP1-215ENST00000541108 LRRC43Q8N309 656 aa18.79■□□□□ 0.6
CLIP1-215ENST00000541108 B3GALNT2Q8NCR0 500 aa18.79■□□□□ 0.6
CLIP1-215ENST00000541108 MSANTD4Q8NCY6 345 aa18.79■□□□□ 0.6
CLIP1-215ENST00000541108 DPEP3Q9H4B8 488 aa18.79■□□□□ 0.6
CLIP1-215ENST00000541108 OSGEPQ9NPF4 335 aa18.79■□□□□ 0.6
CLIP1-215ENST00000541108 DNAJB4Q9UDY4 337 aa18.79■□□□□ 0.6
CLIP1-215ENST00000541108 STRIP2Q9ULQ0 834 aa18.79■□□□□ 0.6
CLIP1-215ENST00000541108 FNDC1Q4ZHG4 1894 aaPredicted RBP18.79■□□□□ 0.6
CLIP1-215ENST00000541108 TBKBP1A7MCY6 615 aa18.79■□□□□ 0.6
CLIP1-215ENST00000541108 PALMO75781 387 aa18.79■□□□□ 0.6
CLIP1-215ENST00000541108 SETSIPP0DME0 302 aa18.79■□□□□ 0.6
CLIP1-215ENST00000541108 PTPN1P18031 435 aaKnown RBP18.79■□□□□ 0.6
CLIP1-215ENST00000541108 BRCC3P46736 316 aa18.79■□□□□ 0.6
CLIP1-215ENST00000541108 TUBB2AQ13885 445 aa18.79■□□□□ 0.6
CLIP1-215ENST00000541108 PAN2Q504Q3 1202 aaKnown RBP18.79■□□□□ 0.6
CLIP1-215ENST00000541108 PKDCCQ504Y2 493 aa18.79■□□□□ 0.6
CLIP1-215ENST00000541108 SLFN11Q7Z7L1 901 aa18.79■□□□□ 0.6
CLIP1-215ENST00000541108 LRRC57Q8N9N7 239 aa18.79■□□□□ 0.6
CLIP1-215ENST00000541108 ACBD6Q9BR61 282 aa18.79■□□□□ 0.6
CLIP1-215ENST00000541108 TUBB2BQ9BVA1 445 aa18.79■□□□□ 0.6
CLIP1-215ENST00000541108 COLEC11Q9BWP8 271 aa18.79■□□□□ 0.6
CLIP1-215ENST00000541108 MRPL47Q9HD33 250 aaKnown RBP18.79■□□□□ 0.6
CLIP1-215ENST00000541108 IL23AQ9NPF7 189 aa18.79■□□□□ 0.6
CLIP1-215ENST00000541108 HESX1Q9UBX0 185 aa18.79■□□□□ 0.6
CLIP1-215ENST00000541108 CDH9Q9ULB4 789 aa18.79■□□□□ 0.6
CLIP1-215ENST00000541108 GRID2IPA4D2P6 1211 aa18.78■□□□□ 0.6
CLIP1-215ENST00000541108 M0QYV0 167 aa18.78■□□□□ 0.6
CLIP1-215ENST00000541108 NRP1O14786 923 aa18.78■□□□□ 0.6
CLIP1-215ENST00000541108 ITGB1P05556 798 aa18.78■□□□□ 0.6
CLIP1-215ENST00000541108 PAPD7Q5XG87 772 aaKnown RBP18.78■□□□□ 0.6
CLIP1-215ENST00000541108 PLEKHA7Q6IQ23 1121 aa18.78■□□□□ 0.6
CLIP1-215ENST00000541108 MMS22LQ6ZRQ5 1243 aa18.78■□□□□ 0.6
CLIP1-215ENST00000541108 ANKRD52Q8NB46 1076 aa18.78■□□□□ 0.6
CLIP1-215ENST00000541108 STK32AQ8WU08 396 aa18.78■□□□□ 0.6
CLIP1-215ENST00000541108 HNRNPABQ99729 332 aaKnown RBP18.78■□□□□ 0.6
CLIP1-215ENST00000541108 C11orf70Q9BRQ4 267 aa18.78■□□□□ 0.6
CLIP1-215ENST00000541108 MIS12Q9H081 205 aa18.78■□□□□ 0.6
CLIP1-215ENST00000541108 PCDHB8Q9UN66 801 aa18.78■□□□□ 0.6
CLIP1-215ENST00000541108 COG5Q9UP83 839 aa18.78■□□□□ 0.6
CLIP1-215ENST00000541108 SCINQ9Y6U3 715 aa18.78■□□□□ 0.6
CLIP1-215ENST00000541108 TADA2AO75478 443 aa18.77■□□□□ 0.6
CLIP1-215ENST00000541108 RRM1P23921 792 aa18.77■□□□□ 0.6
CLIP1-215ENST00000541108 GABRB2P47870 512 aa18.77■□□□□ 0.6
CLIP1-215ENST00000541108 GATMP50440 423 aa18.77■□□□□ 0.6
CLIP1-215ENST00000541108 GSCP56915 257 aaPredicted RBP18.77■□□□□ 0.6
CLIP1-215ENST00000541108 PPIGQ13427 754 aaKnown RBP eCLIP18.77■□□□□ 0.6
CLIP1-215ENST00000541108 HASPINQ8TF76 798 aa18.77■□□□□ 0.6
CLIP1-215ENST00000541108 NUP85Q9BW27 656 aa18.77■□□□□ 0.6
CLIP1-215ENST00000541108 FAM49BQ9NUQ9 324 aa18.77■□□□□ 0.6
CLIP1-215ENST00000541108 PARVAQ9NVD7 372 aa18.77■□□□□ 0.6
CLIP1-215ENST00000541108 WDR35Q9P2L0 1181 aa18.77■□□□□ 0.6
CLIP1-215ENST00000541108 ADAM28Q9UKQ2 775 aa18.77■□□□□ 0.6
CLIP1-215ENST00000541108 FAN1Q9Y2M0 1017 aa18.77■□□□□ 0.6
CLIP1-215ENST00000541108 TIMM13Q9Y5L4 95 aaPredicted RBP18.77■□□□□ 0.6
CLIP1-215ENST00000541108 I3L4J1 428 aa18.76■□□□□ 0.59
CLIP1-215ENST00000541108 SYN3O14994 580 aa18.76■□□□□ 0.59
CLIP1-215ENST00000541108 HCRTO43612 131 aa18.76■□□□□ 0.59
CLIP1-215ENST00000541108 UPP2O95045 317 aa18.76■□□□□ 0.59
CLIP1-215ENST00000541108 PRLRP16471 622 aa18.76■□□□□ 0.59
CLIP1-215ENST00000541108 SNX16P57768 344 aa18.76■□□□□ 0.59
CLIP1-215ENST00000541108 GOLGA7BQ2TAP0 167 aa18.76■□□□□ 0.59
CLIP1-215ENST00000541108 THEM5Q8N1Q8 247 aa18.76■□□□□ 0.59
CLIP1-215ENST00000541108 ZNF564Q8TBZ8 553 aaPredicted RBP18.76■□□□□ 0.59
CLIP1-215ENST00000541108 SLC35F5Q8WV83 523 aa18.76■□□□□ 0.59
CLIP1-215ENST00000541108 ZNF689Q96CS4 500 aaPredicted RBP18.76■□□□□ 0.59
CLIP1-215ENST00000541108 C18orf8Q96DM3 657 aa18.76■□□□□ 0.59
CLIP1-215ENST00000541108 L2HGDHQ9H9P8 463 aa18.76■□□□□ 0.59
CLIP1-215ENST00000541108 CYTH4Q9UIA0 394 aa18.76■□□□□ 0.59
CLIP1-215ENST00000541108 CARNS1A5YM72 827 aa18.76■□□□□ 0.59
CLIP1-215ENST00000541108 URI1O94763 535 aaPredicted RBP18.76■□□□□ 0.59
CLIP1-215ENST00000541108 GALTP07902 379 aa18.76■□□□□ 0.59
CLIP1-215ENST00000541108 BCAT1P54687 386 aa18.76■□□□□ 0.59
CLIP1-215ENST00000541108 WDR5P61964 334 aaKnown RBP18.76■□□□□ 0.59
CLIP1-215ENST00000541108 PLCB3Q01970 1234 aa18.76■□□□□ 0.59
CLIP1-215ENST00000541108 YWHAHQ04917 246 aaPredicted RBP18.76■□□□□ 0.59
CLIP1-215ENST00000541108 ELAVL2Q12926 359 aaKnown RBP18.76■□□□□ 0.59
CLIP1-215ENST00000541108 PDCLQ13371 301 aa18.76■□□□□ 0.59
CLIP1-215ENST00000541108 PTPN20Q4JDL3 420 aa18.76■□□□□ 0.59
CLIP1-215ENST00000541108 OVOS1Q6IE37 1185 aa18.76■□□□□ 0.59
CLIP1-215ENST00000541108 C11orf63Q6NUN7 778 aa18.76■□□□□ 0.59
CLIP1-215ENST00000541108 DAAM2Q86T65 1068 aa18.76■□□□□ 0.59
CLIP1-215ENST00000541108 TTC30AQ86WT1 665 aa18.76■□□□□ 0.59
CLIP1-215ENST00000541108 UBA3Q8TBC4 463 aa18.76■□□□□ 0.59
CLIP1-215ENST00000541108 SYT15Q9BQS2 421 aa18.76■□□□□ 0.59
CLIP1-215ENST00000541108 ABCB6Q9NP58 842 aa18.76■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms