RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 TEAD2Q15562 447 aa15.2■□□□□ 0.02
USP28-209ENST00000540925 WDR72Q3MJ13 1102 aa15.2■□□□□ 0.02
USP28-209ENST00000540925 MGAT5BQ3V5L5 792 aa15.2■□□□□ 0.02
USP28-209ENST00000540925 CEP135Q66GS9 1140 aa15.2■□□□□ 0.02
USP28-209ENST00000540925 CWF19L1Q69YN2 538 aaKnown RBP15.2■□□□□ 0.02
USP28-209ENST00000540925 TANGO2Q6ICL3 276 aa15.2■□□□□ 0.02
USP28-209ENST00000540925 SV2AQ7L0J3 742 aa15.2■□□□□ 0.02
USP28-209ENST00000540925 ADSSL1Q8N142 457 aa15.2■□□□□ 0.02
USP28-209ENST00000540925 SYAP1Q96A49 352 aaPredicted RBP15.2■□□□□ 0.02
USP28-209ENST00000540925 ELSPBP1Q96BH3 223 aa15.2■□□□□ 0.02
USP28-209ENST00000540925 FUBP3Q96I24 572 aaKnown RBP eCLIP15.2■□□□□ 0.02
USP28-209ENST00000540925 KXD1Q9BQD3 176 aa15.2■□□□□ 0.02
USP28-209ENST00000540925 MRPL45Q9BRJ2 306 aaKnown RBP15.2■□□□□ 0.02
USP28-209ENST00000540925 PLA2G2FQ9BZM2 168 aa15.2■□□□□ 0.02
USP28-209ENST00000540925 ABI2Q9NYB9 513 aaPredicted RBP15.2■□□□□ 0.02
USP28-209ENST00000540925 GTF3C4Q9UKN8 822 aa15.2■□□□□ 0.02
USP28-209ENST00000540925 CDH9Q9ULB4 789 aa15.2■□□□□ 0.02
USP28-209ENST00000540925 FRMD4BQ9Y2L6 1034 aa15.2■□□□□ 0.02
USP28-209ENST00000540925 R3HCC1Q9Y3T6 440 aaKnown RBP15.2■□□□□ 0.02
USP28-209ENST00000540925 NCANO14594 1321 aa15.19■□□□□ 0.02
USP28-209ENST00000540925 DMDP11532 3685 aa15.19■□□□□ 0.02
USP28-209ENST00000540925 A0A1W2PRU2 124 aa15.19■□□□□ 0.02
USP28-209ENST00000540925 ATP2C2O75185 946 aa15.19■□□□□ 0.02
USP28-209ENST00000540925 SMC2O95347 1197 aa15.19■□□□□ 0.02
USP28-209ENST00000540925 MYL4P12829 197 aa15.19■□□□□ 0.02
USP28-209ENST00000540925 GJA1P17302 382 aa15.19■□□□□ 0.02
USP28-209ENST00000540925 BMP6P22004 513 aa15.19■□□□□ 0.02
USP28-209ENST00000540925 CYP2F1P24903 491 aa15.19■□□□□ 0.02
USP28-209ENST00000540925 RPL13P26373 211 aaKnown RBP15.19■□□□□ 0.02
USP28-209ENST00000540925 MAGEA11P43364 429 aa15.19■□□□□ 0.02
USP28-209ENST00000540925 GPC5P78333 572 aa15.19■□□□□ 0.02
USP28-209ENST00000540925 ADAM9Q13443 819 aa15.19■□□□□ 0.02
USP28-209ENST00000540925 INTS8Q75QN2 995 aaKnown RBP15.19■□□□□ 0.02
USP28-209ENST00000540925 TMEM150AQ86TG1 271 aa15.19■□□□□ 0.02
USP28-209ENST00000540925 ITIH5Q86UX2 942 aa15.19■□□□□ 0.02
USP28-209ENST00000540925 GPR152Q8TDT2 470 aa15.19■□□□□ 0.02
USP28-209ENST00000540925 SMARCD2Q92925 531 aa15.19■□□□□ 0.02
USP28-209ENST00000540925 SMARCE1Q969G3 411 aa15.19■□□□□ 0.02
USP28-209ENST00000540925 SYT15Q9BQS2 421 aa15.19■□□□□ 0.02
USP28-209ENST00000540925 PI4K2AQ9BTU6 479 aa15.19■□□□□ 0.02
USP28-209ENST00000540925 GTPBP4Q9BZE4 634 aaKnown RBP15.19■□□□□ 0.02
USP28-209ENST00000540925 GPR88Q9GZN0 384 aa15.19■□□□□ 0.02
USP28-209ENST00000540925 MYO15AQ9UKN7 3530 aa15.18■□□□□ 0.02
USP28-209ENST00000540925 COL4A2P08572 1712 aa15.18■□□□□ 0.02
USP28-209ENST00000540925 FGF19O95750 216 aa15.18■□□□□ 0.02
USP28-209ENST00000540925 ASS1P00966 412 aaKnown RBP15.18■□□□□ 0.02
USP28-209ENST00000540925 CFHP08603 1231 aa15.18■□□□□ 0.02
USP28-209ENST00000540925 WEE1P30291 646 aa15.18■□□□□ 0.02
USP28-209ENST00000540925 AVPR2P30518 371 aa15.18■□□□□ 0.02
USP28-209ENST00000540925 PSMC2P35998 433 aaKnown RBP15.18■□□□□ 0.02
USP28-209ENST00000540925 GPR15P49685 360 aa15.18■□□□□ 0.02
USP28-209ENST00000540925 CLCN5P51795 746 aa15.18■□□□□ 0.02
USP28-209ENST00000540925 VAMP7P51809 220 aa15.18■□□□□ 0.02
USP28-209ENST00000540925 PMS1P54277 932 aaKnown RBP15.18■□□□□ 0.02
USP28-209ENST00000540925 PSMC1P62191 440 aaKnown RBP15.18■□□□□ 0.02
USP28-209ENST00000540925 TNNC1P63316 161 aa15.18■□□□□ 0.02
USP28-209ENST00000540925 PPP3CAQ08209 521 aa15.18■□□□□ 0.02
USP28-209ENST00000540925 TRPC3Q13507 836 aa15.18■□□□□ 0.02
USP28-209ENST00000540925 ZNF699Q32M78 642 aa15.18■□□□□ 0.02
USP28-209ENST00000540925 STXBP5Q5T5C0 1151 aa15.18■□□□□ 0.02
USP28-209ENST00000540925 IER5LQ5T953 404 aa15.18■□□□□ 0.02
USP28-209ENST00000540925 SUGP1Q8IWZ8 645 aaKnown RBP15.18■□□□□ 0.02
USP28-209ENST00000540925 FAM186BQ8IYM0 893 aa15.18■□□□□ 0.02
USP28-209ENST00000540925 SIX5Q8N196 739 aa15.18■□□□□ 0.02
USP28-209ENST00000540925 TMEM105Q8N8V8 129 aa15.18■□□□□ 0.02
USP28-209ENST00000540925 MYCBPAPQ8TBZ2 947 aa15.18■□□□□ 0.02
USP28-209ENST00000540925 MMS19Q96T76 1030 aa15.18■□□□□ 0.02
USP28-209ENST00000540925 SDCBP2Q9H190 292 aa15.18■□□□□ 0.02
USP28-209ENST00000540925 MAN1B1Q9UKM7 699 aa15.18■□□□□ 0.02
USP28-209ENST00000540925 VPS13AQ96RL7 3174 aa15.18■□□□□ 0.02
USP28-209ENST00000540925 USP34Q70CQ2 3546 aa15.17■□□□□ 0.02
USP28-209ENST00000540925 OBSL1O75147 1896 aa15.17■□□□□ 0.02
USP28-209ENST00000540925 KINO60870 393 aaKnown RBP15.17■□□□□ 0.02
USP28-209ENST00000540925 NOL4O94818 638 aa15.17■□□□□ 0.02
USP28-209ENST00000540925 F11P03951 625 aa15.17■□□□□ 0.02
USP28-209ENST00000540925 PDGFRBP09619 1106 aa15.17■□□□□ 0.02
USP28-209ENST00000540925 TRIM49P0CI25 452 aa15.17■□□□□ 0.02
USP28-209ENST00000540925 TRIM49CP0CI26 452 aa15.17■□□□□ 0.02
USP28-209ENST00000540925 CD44P16070 742 aaKnown RBP15.17■□□□□ 0.02
USP28-209ENST00000540925 GABRR2P28476 465 aa15.17■□□□□ 0.02
USP28-209ENST00000540925 GNL1P36915 607 aaPredicted RBP15.17■□□□□ 0.02
USP28-209ENST00000540925 MRE11P49959 708 aa15.17■□□□□ 0.02
USP28-209ENST00000540925 BIRC3Q13489 604 aa15.17■□□□□ 0.02
USP28-209ENST00000540925 VEPH1Q14D04 833 aa15.17■□□□□ 0.02
USP28-209ENST00000540925 SGSM1Q2NKQ1 1148 aa15.17■□□□□ 0.02
USP28-209ENST00000540925 ANKRD40Q6AI12 368 aa15.17■□□□□ 0.02
USP28-209ENST00000540925 ASTLQ6HA08 431 aaPredicted RBP15.17■□□□□ 0.02
USP28-209ENST00000540925 ZSCAN18Q8TBC5 510 aaPredicted RBP15.17■□□□□ 0.02
USP28-209ENST00000540925 GIPC2Q8TF65 315 aa15.17■□□□□ 0.02
USP28-209ENST00000540925 TAF4BQ92750 862 aa15.17■□□□□ 0.02
USP28-209ENST00000540925 MYLPFQ96A32 169 aa15.17■□□□□ 0.02
USP28-209ENST00000540925 ELMO3Q96BJ8 720 aa15.17■□□□□ 0.02
USP28-209ENST00000540925 RSPRY1Q96DX4 576 aa15.17■□□□□ 0.02
USP28-209ENST00000540925 TRMT2BQ96GJ1 504 aaKnown RBP15.17■□□□□ 0.02
USP28-209ENST00000540925 PCED1BQ96HM7 432 aa15.17■□□□□ 0.02
USP28-209ENST00000540925 MYRFLQ96LU7 910 aa15.17■□□□□ 0.02
USP28-209ENST00000540925 DDX23Q9BUQ8 820 aaKnown RBP15.17■□□□□ 0.02
USP28-209ENST00000540925 DPEP3Q9H4B8 488 aa15.17■□□□□ 0.02
USP28-209ENST00000540925 SMYD3Q9H7B4 428 aa15.17■□□□□ 0.02
USP28-209ENST00000540925 NXF1Q9UBU9 619 aaKnown RBP15.17■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms