RNA–Protein interactions for RNA: ENST00000540797.5

USP3-204, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2 BASIC

Gene USP3, Length 5,474 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-204ENST00000540797 SLC15A5A6NIM6 579 aa14.75□□□□□ -0.05
USP3-204ENST00000540797 F9P00740 461 aa14.75□□□□□ -0.05
USP3-204ENST00000540797 GFAPP14136 432 aa14.75□□□□□ -0.05
USP3-204ENST00000540797 NOGQ13253 232 aa14.75□□□□□ -0.05
USP3-204ENST00000540797 TTI2Q6NXR4 508 aa14.75□□□□□ -0.05
USP3-204ENST00000540797 UPF3AQ9H1J1 476 aaKnown RBP14.75□□□□□ -0.05
USP3-204ENST00000540797 SYNDIG1Q9H7V2 258 aa14.75□□□□□ -0.05
USP3-204ENST00000540797 DPP7Q9UHL4 492 aa14.75□□□□□ -0.05
USP3-204ENST00000540797 IFNA8P32881 189 aa14.74□□□□□ -0.05
USP3-204ENST00000540797 FOXD4Q12950 439 aaPredicted RBP14.74□□□□□ -0.05
USP3-204ENST00000540797 MYBPC2Q14324 1141 aa14.74□□□□□ -0.05
USP3-204ENST00000540797 WDR18Q9BV38 432 aa14.74□□□□□ -0.05
USP3-204ENST00000540797 TRIM33Q9UPN9 1127 aa14.74□□□□□ -0.05
USP3-204ENST00000540797 CYTH3O43739 400 aa14.74□□□□□ -0.05
USP3-204ENST00000540797 RALBP11234 206 aa14.74□□□□□ -0.05
USP3-204ENST00000540797 AXLP30530 894 aa14.74□□□□□ -0.05
USP3-204ENST00000540797 FKBP1BP68106 108 aa14.74□□□□□ -0.05
USP3-204ENST00000540797 EARS2Q5JPH6 523 aaKnown RBP14.74□□□□□ -0.05
USP3-204ENST00000540797 E4F1Q66K89 784 aaPredicted RBP14.74□□□□□ -0.05
USP3-204ENST00000540797 MFN1Q8IWA4 741 aa14.74□□□□□ -0.05
USP3-204ENST00000540797 SPIRE2Q8WWL2 714 aa14.74□□□□□ -0.05
USP3-204ENST00000540797 TMEM176AQ96HP8 235 aa14.74□□□□□ -0.05
USP3-204ENST00000540797 CISHQ9NSE2 258 aa14.74□□□□□ -0.05
USP3-204ENST00000540797 CYP39A1Q9NYL5 469 aa14.74□□□□□ -0.05
USP3-204ENST00000540797 NEU2Q9Y3R4 380 aa14.74□□□□□ -0.05
USP3-204ENST00000540797 TTLL13PA6NNM8 815 aa14.74□□□□□ -0.05
USP3-204ENST00000540797 DIAPH2O60879 1101 aa14.74□□□□□ -0.05
USP3-204ENST00000540797 AKAP3O75969 853 aa14.74□□□□□ -0.05
USP3-204ENST00000540797 AMHP03971 560 aa14.74□□□□□ -0.05
USP3-204ENST00000540797 CYP11B1P15538 503 aa14.74□□□□□ -0.05
USP3-204ENST00000540797 PDCLQ13371 301 aa14.74□□□□□ -0.05
USP3-204ENST00000540797 RABGAP1LQ5R372 815 aa14.74□□□□□ -0.05
USP3-204ENST00000540797 TMEM150BA6NC51 233 aa14.74□□□□□ -0.05
USP3-204ENST00000540797 MSCO60682 206 aa14.74□□□□□ -0.05
USP3-204ENST00000540797 SPAG7O75391 227 aa14.74□□□□□ -0.05
USP3-204ENST00000540797 FBXO21O94952 628 aa14.74□□□□□ -0.05
USP3-204ENST00000540797 ACSF2Q96CM8 615 aaPredicted RBP14.74□□□□□ -0.05
USP3-204ENST00000540797 SPATA17Q96L03 361 aa14.74□□□□□ -0.05
USP3-204ENST00000540797 L3MBTL1Q9Y468 752 aa14.74□□□□□ -0.05
USP3-204ENST00000540797 TARSL2A2RTX5 802 aaKnown RBP14.73□□□□□ -0.05
USP3-204ENST00000540797 SPECC1L-ADORA2AF8WAN1 911 aa14.73□□□□□ -0.05
USP3-204ENST00000540797 ZNF263O14978 683 aa14.73□□□□□ -0.05
USP3-204ENST00000540797 PRPF4O43172 522 aaKnown RBP eCLIP14.73□□□□□ -0.05
USP3-204ENST00000540797 CABYRO75952 493 aa14.73□□□□□ -0.05
USP3-204ENST00000540797 CYP3A4P08684 503 aa14.73□□□□□ -0.05
USP3-204ENST00000540797 UBA1P22314 1058 aaKnown RBP14.73□□□□□ -0.05
USP3-204ENST00000540797 OVOS1Q6IE37 1185 aa14.73□□□□□ -0.05
USP3-204ENST00000540797 SV2AQ7L0J3 742 aa14.73□□□□□ -0.05
USP3-204ENST00000540797 DDIASQ8IXT1 998 aa14.73□□□□□ -0.05
USP3-204ENST00000540797 MIPOL1Q8TD10 442 aa14.73□□□□□ -0.05
USP3-204ENST00000540797 UCMAQ8WVF2 138 aa14.73□□□□□ -0.05
USP3-204ENST00000540797 TSPAN17Q96FV3 270 aa14.73□□□□□ -0.05
USP3-204ENST00000540797 DDX43Q9NXZ2 648 aaKnown RBP14.73□□□□□ -0.05
USP3-204ENST00000540797 CFAP99D6REC4 459 aa14.73□□□□□ -0.05
USP3-204ENST00000540797 PPP2R2AP63151 447 aa14.73□□□□□ -0.05
USP3-204ENST00000540797 MDM2Q00987 491 aaPredicted RBP14.73□□□□□ -0.05
USP3-204ENST00000540797 CENPPQ6IPU0 288 aa14.73□□□□□ -0.05
USP3-204ENST00000540797 SENP6Q9GZR1 1112 aaPredicted RBP14.73□□□□□ -0.05
USP3-204ENST00000540797 LATS2Q9NRM7 1088 aa14.73□□□□□ -0.05
USP3-204ENST00000540797 FGFR1OP2Q9NVK5 253 aa14.73□□□□□ -0.05
USP3-204ENST00000540797 RIC1Q4ADV7 1423 aa14.73□□□□□ -0.05
USP3-204ENST00000540797 UBR1Q8IWV7 1749 aa14.73□□□□□ -0.05
USP3-204ENST00000540797 ACKR2O00590 384 aa14.73□□□□□ -0.05
USP3-204ENST00000540797 SLC8A1P32418 973 aa14.73□□□□□ -0.05
USP3-204ENST00000540797 KCNA1Q09470 495 aa14.73□□□□□ -0.05
USP3-204ENST00000540797 EFEMP1Q12805 493 aa14.73□□□□□ -0.05
USP3-204ENST00000540797 PTK2BQ14289 1009 aa14.73□□□□□ -0.05
USP3-204ENST00000540797 MORF4L2Q15014 288 aa14.73□□□□□ -0.05
USP3-204ENST00000540797 TBC1D19Q8N5T2 526 aa14.73□□□□□ -0.05
USP3-204ENST00000540797 ELMO2Q96JJ3 720 aa14.73□□□□□ -0.05
USP3-204ENST00000540797 TRIM15Q9C019 465 aa14.73□□□□□ -0.05
USP3-204ENST00000540797 ZNF518BQ9C0D4 1074 aa14.73□□□□□ -0.05
USP3-204ENST00000540797 EPC1Q9H2F5 836 aa14.73□□□□□ -0.05
USP3-204ENST00000540797 TIMM13Q9Y5L4 95 aaPredicted RBP14.73□□□□□ -0.05
USP3-204ENST00000540797 CAPRIN1Q14444 709 aaKnown RBP14.73□□□□□ -0.05
USP3-204ENST00000540797 CYP4F11Q9HBI6 524 aa14.73□□□□□ -0.05
USP3-204ENST00000540797 CASS4Q9NQ75 786 aa14.73□□□□□ -0.05
USP3-204ENST00000540797 KCNA2P16389 499 aa14.72□□□□□ -0.05
USP3-204ENST00000540797 AVPR1AP37288 418 aa14.72□□□□□ -0.05
USP3-204ENST00000540797 CENPCQ03188 943 aa14.72□□□□□ -0.05
USP3-204ENST00000540797 PTPN11Q06124 597 aaPredicted RBP14.72□□□□□ -0.05
USP3-204ENST00000540797 TBCCQ15814 346 aa14.72□□□□□ -0.05
USP3-204ENST00000540797 CELF3Q5SZQ8 465 aaKnown RBP14.72□□□□□ -0.05
USP3-204ENST00000540797 TFB1MQ8WVM0 346 aaKnown RBP14.72□□□□□ -0.05
USP3-204ENST00000540797 BTBD6Q96KE9 485 aa14.72□□□□□ -0.05
USP3-204ENST00000540797 KCNA4P22459 653 aa14.72□□□□□ -0.05
USP3-204ENST00000540797 VSIG10LQ86VR7 867 aa14.72□□□□□ -0.05
USP3-204ENST00000540797 CALML6Q8TD86 181 aa14.72□□□□□ -0.05
USP3-204ENST00000540797 PNMA5Q96PV4 448 aa14.72□□□□□ -0.05
USP3-204ENST00000540797 C20orf96Q9NUD7 363 aaPredicted RBP14.72□□□□□ -0.05
USP3-204ENST00000540797 CPSF2Q9P2I0 782 aaKnown RBP14.72□□□□□ -0.05
USP3-204ENST00000540797 SLC12A8A0AV02 714 aa14.72□□□□□ -0.05
USP3-204ENST00000540797 EML1O00423 815 aa14.72□□□□□ -0.05
USP3-204ENST00000540797 USP10Q14694 798 aaKnown RBP14.72□□□□□ -0.05
USP3-204ENST00000540797 POLD3Q15054 466 aaPredicted RBP14.72□□□□□ -0.05
USP3-204ENST00000540797 SNCBQ16143 134 aa14.72□□□□□ -0.05
USP3-204ENST00000540797 C2CD6Q53TS8 623 aa14.72□□□□□ -0.05
USP3-204ENST00000540797 PRAMEF19Q5SWL8 479 aa14.72□□□□□ -0.05
USP3-204ENST00000540797 NAPEPLDQ6IQ20 393 aa14.72□□□□□ -0.05
USP3-204ENST00000540797 GBP5Q96PP8 586 aa14.72□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms