RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 ZNF317Q96PQ6 595 aaPredicted RBP17.83■□□□□ 0.44
USP28-208ENST00000540438 B3GNT5Q9BYG0 378 aa17.83■□□□□ 0.44
USP28-208ENST00000540438 ELOVL4Q9GZR5 314 aa17.83■□□□□ 0.44
USP28-208ENST00000540438 ATP8B3O60423 1300 aa17.83■□□□□ 0.44
USP28-208ENST00000540438 RASA4BC9J798 803 aa17.82■□□□□ 0.44
USP28-208ENST00000540438 RASA4O43374 803 aa17.82■□□□□ 0.44
USP28-208ENST00000540438 LIASO43766 372 aa17.82■□□□□ 0.44
USP28-208ENST00000540438 TBXAS1P24557 533 aaPredicted RBP17.82■□□□□ 0.44
USP28-208ENST00000540438 PTK6Q13882 451 aa17.82■□□□□ 0.44
USP28-208ENST00000540438 MSS51Q4VC12 460 aa17.82■□□□□ 0.44
USP28-208ENST00000540438 ZNF667Q5HYK9 610 aa17.82■□□□□ 0.44
USP28-208ENST00000540438 PHF13Q86YI8 300 aaPredicted RBP17.82■□□□□ 0.44
USP28-208ENST00000540438 PGM2Q96G03 612 aa17.82■□□□□ 0.44
USP28-208ENST00000540438 TRAIPQ9BWF2 469 aa17.82■□□□□ 0.44
USP28-208ENST00000540438 PIH1D1Q9NWS0 290 aaKnown RBP17.82■□□□□ 0.44
USP28-208ENST00000540438 KLK14Q9P0G3 267 aa17.82■□□□□ 0.44
USP28-208ENST00000540438 SYNJ2BP-COX16A0A087WUM0 186 aa17.82■□□□□ 0.44
USP28-208ENST00000540438 EXOC1LA0A1B0GW35 172 aa17.82■□□□□ 0.44
USP28-208ENST00000540438 ABLIM1O14639 778 aa17.82■□□□□ 0.44
USP28-208ENST00000540438 KRT15P19012 456 aa17.82■□□□□ 0.44
USP28-208ENST00000540438 ATXN1P54253 815 aaKnown RBP17.82■□□□□ 0.44
USP28-208ENST00000540438 PKN2Q16513 984 aaKnown RBP17.82■□□□□ 0.44
USP28-208ENST00000540438 SGSM1Q2NKQ1 1148 aa17.82■□□□□ 0.44
USP28-208ENST00000540438 IER5Q5VY09 327 aa17.82■□□□□ 0.44
USP28-208ENST00000540438 MPZL3Q6UWV2 235 aa17.82■□□□□ 0.44
USP28-208ENST00000540438 MORC4Q8TE76 937 aa17.82■□□□□ 0.44
USP28-208ENST00000540438 SLCO1B3Q9NPD5 702 aa17.82■□□□□ 0.44
USP28-208ENST00000540438 COX16Q9P0S2 106 aa17.82■□□□□ 0.44
USP28-208ENST00000540438 IP6K2Q9UHH9 426 aa17.82■□□□□ 0.44
USP28-208ENST00000540438 CLEC11AQ9Y240 323 aa17.82■□□□□ 0.44
USP28-208ENST00000540438 LCTP09848 1927 aa17.82■□□□□ 0.44
USP28-208ENST00000540438 DOCK1Q14185 1865 aa17.82■□□□□ 0.44
USP28-208ENST00000540438 LRCH4O75427 683 aa17.82■□□□□ 0.44
USP28-208ENST00000540438 GJA5P36382 358 aa17.82■□□□□ 0.44
USP28-208ENST00000540438 RFC5P40937 340 aa17.82■□□□□ 0.44
USP28-208ENST00000540438 SLC1A1P43005 524 aa17.82■□□□□ 0.44
USP28-208ENST00000540438 BASP1P80723 227 aaKnown RBP17.82■□□□□ 0.44
USP28-208ENST00000540438 FAM102AQ5T9C2 384 aaPredicted RBP17.82■□□□□ 0.44
USP28-208ENST00000540438 RFX6Q8HWS3 928 aa17.82■□□□□ 0.44
USP28-208ENST00000540438 WDR49Q8IV35 697 aa17.82■□□□□ 0.44
USP28-208ENST00000540438 UNC45BQ8IWX7 931 aa17.82■□□□□ 0.44
USP28-208ENST00000540438 TMEM174Q8WUU8 243 aa17.82■□□□□ 0.44
USP28-208ENST00000540438 NDRG1Q92597 394 aaKnown RBP17.82■□□□□ 0.44
USP28-208ENST00000540438 ANKRD36BP1Q96IX9 119 aa17.82■□□□□ 0.44
USP28-208ENST00000540438 PNMA3Q9UL41 463 aa17.82■□□□□ 0.44
USP28-208ENST00000540438 HEY1Q9Y5J3 304 aa17.82■□□□□ 0.44
USP28-208ENST00000540438 BBS9Q3SYG4 887 aa17.81■□□□□ 0.44
USP28-208ENST00000540438 TBC1D1Q86TI0 1168 aaPredicted RBP17.81■□□□□ 0.44
USP28-208ENST00000540438 PDGFRBP09619 1106 aa17.81■□□□□ 0.44
USP28-208ENST00000540438 OR6B2Q6IFH4 312 aa17.81■□□□□ 0.44
USP28-208ENST00000540438 C6orf89Q6UWU4 347 aa17.81■□□□□ 0.44
USP28-208ENST00000540438 PNMA8AQ86V59 439 aaPredicted RBP17.81■□□□□ 0.44
USP28-208ENST00000540438 KATNAL2Q8IYT4 538 aa17.81■□□□□ 0.44
USP28-208ENST00000540438 PLCD3Q8N3E9 789 aa17.81■□□□□ 0.44
USP28-208ENST00000540438 C12orf50Q8NA57 414 aaPredicted RBP17.81■□□□□ 0.44
USP28-208ENST00000540438 KCTD6Q8NC69 237 aa17.81■□□□□ 0.44
USP28-208ENST00000540438 CDHR5Q9HBB8 845 aa17.81■□□□□ 0.44
USP28-208ENST00000540438 IFT122Q9HBG6 1241 aa17.81■□□□□ 0.44
USP28-208ENST00000540438 WHRNQ9P202 907 aa17.81■□□□□ 0.44
USP28-208ENST00000540438 SCINQ9Y6U3 715 aa17.81■□□□□ 0.44
USP28-208ENST00000540438 LOXHD1Q8IVV2 1947 aa17.81■□□□□ 0.44
USP28-208ENST00000540438 PAPPA2Q9BXP8 1791 aa17.81■□□□□ 0.44
USP28-208ENST00000540438 AGTP01019 485 aa17.8■□□□□ 0.44
USP28-208ENST00000540438 MYBL1P10243 752 aa17.8■□□□□ 0.44
USP28-208ENST00000540438 ARF4P18085 180 aaPredicted RBP17.8■□□□□ 0.44
USP28-208ENST00000540438 TFE3P19532 575 aaPredicted RBP17.8■□□□□ 0.44
USP28-208ENST00000540438 IREB2P48200 963 aaKnown RBP17.8■□□□□ 0.44
USP28-208ENST00000540438 RAD23BP54727 409 aa17.8■□□□□ 0.44
USP28-208ENST00000540438 TCEAL1Q15170 157 aa17.8■□□□□ 0.44
USP28-208ENST00000540438 E2F5Q15329 346 aa17.8■□□□□ 0.44
USP28-208ENST00000540438 CCNG2Q16589 344 aa17.8■□□□□ 0.44
USP28-208ENST00000540438 ARMCX2Q7L311 632 aa17.8■□□□□ 0.44
USP28-208ENST00000540438 ZNF677Q86XU0 584 aa17.8■□□□□ 0.44
USP28-208ENST00000540438 SCUBE3Q8IX30 993 aa17.8■□□□□ 0.44
USP28-208ENST00000540438 TCP11Q8WWU5 503 aa17.8■□□□□ 0.44
USP28-208ENST00000540438 CFAP57Q96MR6 1250 aa17.8■□□□□ 0.44
USP28-208ENST00000540438 EDNRBP24530 442 aa17.8■□□□□ 0.44
USP28-208ENST00000540438 STX2P32856 288 aa17.8■□□□□ 0.44
USP28-208ENST00000540438 MBTD1Q05BQ5 628 aa17.8■□□□□ 0.44
USP28-208ENST00000540438 C1QBPQ07021 282 aaKnown RBP17.8■□□□□ 0.44
USP28-208ENST00000540438 DNAJC3Q13217 504 aa17.8■□□□□ 0.44
USP28-208ENST00000540438 MICALCLQ6ZW33 695 aa17.8■□□□□ 0.44
USP28-208ENST00000540438 ACOT1Q86TX2 421 aa17.8■□□□□ 0.44
USP28-208ENST00000540438 CCDC197Q8NCU1 140 aa17.8■□□□□ 0.44
USP28-208ENST00000540438 EXD1Q8NHP7 514 aa17.8■□□□□ 0.44
USP28-208ENST00000540438 TRIM11Q96F44 468 aa17.8■□□□□ 0.44
USP28-208ENST00000540438 TMEM134Q9H6X4 195 aa17.8■□□□□ 0.44
USP28-208ENST00000540438 NGRNQ9NPE2 291 aaKnown RBP17.8■□□□□ 0.44
USP28-208ENST00000540438 GINM1Q9NU53 330 aa17.8■□□□□ 0.44
USP28-208ENST00000540438 ARID2Q68CP9 1835 aa17.8■□□□□ 0.44
USP28-208ENST00000540438 AKAP5P24588 427 aa17.8■□□□□ 0.44
USP28-208ENST00000540438 IGFBP6P24592 240 aaPredicted RBP17.8■□□□□ 0.44
USP28-208ENST00000540438 PPP6R3Q5H9R7 873 aaPredicted RBP17.8■□□□□ 0.44
USP28-208ENST00000540438 FNBP1LQ5T0N5 605 aa17.8■□□□□ 0.44
USP28-208ENST00000540438 CCDC89Q8N998 374 aa17.8■□□□□ 0.44
USP28-208ENST00000540438 SETD4Q9NVD3 440 aa17.8■□□□□ 0.44
USP28-208ENST00000540438 CEP83Q9Y592 693 aa17.8■□□□□ 0.44
USP28-208ENST00000540438 PARP14Q460N5 1801 aa17.79■□□□□ 0.44
USP28-208ENST00000540438 hCG_1818297A0A087WSY0 165 aa17.79■□□□□ 0.44
USP28-208ENST00000540438 ACKR2O00590 384 aa17.79■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms