RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 LRRIQ3A6PVS8 624 aaPredicted RBP12.75□□□□□ -0.37
CLIP1-208ENST00000537004 TULP1O00294 542 aaPredicted RBP12.75□□□□□ -0.37
CLIP1-208ENST00000537004 LILRB3O75022 631 aa12.75□□□□□ -0.37
CLIP1-208ENST00000537004 LRRN2O75325 713 aa12.75□□□□□ -0.37
CLIP1-208ENST00000537004 TADA2AO75478 443 aa12.75□□□□□ -0.37
CLIP1-208ENST00000537004 CCDC172P0C7W6 258 aa12.75□□□□□ -0.37
CLIP1-208ENST00000537004 MCF2P10911 925 aa12.75□□□□□ -0.37
CLIP1-208ENST00000537004 TNFSF9P41273 254 aa12.75□□□□□ -0.37
CLIP1-208ENST00000537004 MATR3P43243 847 aaKnown RBP eCLIP12.75□□□□□ -0.37
CLIP1-208ENST00000537004 TUBB4BP68371 445 aa12.75□□□□□ -0.37
CLIP1-208ENST00000537004 BMS1Q14692 1282 aaKnown RBP12.75□□□□□ -0.37
CLIP1-208ENST00000537004 KRT39Q6A163 491 aa12.75□□□□□ -0.37
CLIP1-208ENST00000537004 FUT10Q6P4F1 479 aa12.75□□□□□ -0.37
CLIP1-208ENST00000537004 ALKBH5Q6P6C2 394 aaKnown RBP12.75□□□□□ -0.37
CLIP1-208ENST00000537004 ALKAL1Q6UXT8 129 aa12.75□□□□□ -0.37
CLIP1-208ENST00000537004 USP37Q86T82 979 aa12.75□□□□□ -0.37
CLIP1-208ENST00000537004 ARHGEF19Q8IW93 802 aa12.75□□□□□ -0.37
CLIP1-208ENST00000537004 RNF168Q8IYW5 571 aaPredicted RBP12.75□□□□□ -0.37
CLIP1-208ENST00000537004 C12orf76Q8N812 135 aaPredicted RBP12.75□□□□□ -0.37
CLIP1-208ENST00000537004 ACAP3Q96P50 834 aa12.75□□□□□ -0.37
CLIP1-208ENST00000537004 POP1Q99575 1024 aaKnown RBP12.75□□□□□ -0.37
CLIP1-208ENST00000537004 FAM213AQ9BRX8 229 aa12.75□□□□□ -0.37
CLIP1-208ENST00000537004 COLEC11Q9BWP8 271 aa12.75□□□□□ -0.37
CLIP1-208ENST00000537004 FOXN3O00409 490 aaPredicted RBP12.74□□□□□ -0.37
CLIP1-208ENST00000537004 DDX3XO00571 662 aaKnown RBP eCLIP12.74□□□□□ -0.37
CLIP1-208ENST00000537004 WEE2P0C1S8 567 aa12.74□□□□□ -0.37
CLIP1-208ENST00000537004 RPL17P18621 184 aaKnown RBP12.74□□□□□ -0.37
CLIP1-208ENST00000537004 CLCNKBP51801 687 aa12.74□□□□□ -0.37
CLIP1-208ENST00000537004 YARSP54577 528 aaKnown RBP12.74□□□□□ -0.37
CLIP1-208ENST00000537004 MCL1Q07820 350 aa12.74□□□□□ -0.37
CLIP1-208ENST00000537004 SMAD2Q15796 467 aaKnown RBP12.74□□□□□ -0.37
CLIP1-208ENST00000537004 SLC10A6Q3KNW5 377 aa12.74□□□□□ -0.37
CLIP1-208ENST00000537004 ZPBP2Q6X784 338 aa12.74□□□□□ -0.37
CLIP1-208ENST00000537004 GLYCTKQ8IVS8 523 aa12.74□□□□□ -0.37
CLIP1-208ENST00000537004 C3orf58Q8NDZ4 430 aa12.74□□□□□ -0.37
CLIP1-208ENST00000537004 C18orf25Q96B23 403 aaPredicted RBP12.74□□□□□ -0.37
CLIP1-208ENST00000537004 CAPZA3Q96KX2 299 aa12.74□□□□□ -0.37
CLIP1-208ENST00000537004 SNX27Q96L92 541 aa12.74□□□□□ -0.37
CLIP1-208ENST00000537004 TMEM8AQ9HCN3 771 aa12.74□□□□□ -0.37
CLIP1-208ENST00000537004 MRPL17Q9NRX2 175 aaKnown RBP12.74□□□□□ -0.37
CLIP1-208ENST00000537004 SNX12Q9UMY4 172 aa12.74□□□□□ -0.37
CLIP1-208ENST00000537004 USP15Q9Y4E8 981 aaPredicted RBP12.74□□□□□ -0.37
CLIP1-208ENST00000537004 ATP8B3O60423 1300 aa12.74□□□□□ -0.37
CLIP1-208ENST00000537004 CARNS1A5YM72 827 aa12.74□□□□□ -0.37
CLIP1-208ENST00000537004 BTNL10A8MVZ5 291 aa12.74□□□□□ -0.37
CLIP1-208ENST00000537004 EXTL3O43909 919 aa12.74□□□□□ -0.37
CLIP1-208ENST00000537004 PIGRP01833 764 aa12.74□□□□□ -0.37
CLIP1-208ENST00000537004 URODP06132 367 aa12.74□□□□□ -0.37
CLIP1-208ENST00000537004 CXCL8P10145 99 aa12.74□□□□□ -0.37
CLIP1-208ENST00000537004 KLRC2P26717 231 aa12.74□□□□□ -0.37
CLIP1-208ENST00000537004 CLCN6P51797 869 aa12.74□□□□□ -0.37
CLIP1-208ENST00000537004 ENPEPQ07075 957 aa12.74□□□□□ -0.37
CLIP1-208ENST00000537004 SMAD4Q13485 552 aaKnown RBP12.74□□□□□ -0.37
CLIP1-208ENST00000537004 RTP2Q5QGT7 225 aa12.74□□□□□ -0.37
CLIP1-208ENST00000537004 KIAA0319Q5VV43 1072 aa12.74□□□□□ -0.37
CLIP1-208ENST00000537004 KIAA1841Q6NSI8 718 aa12.74□□□□□ -0.37
CLIP1-208ENST00000537004 ANKRD54Q6NXT1 300 aa12.74□□□□□ -0.37
CLIP1-208ENST00000537004 TMEM184AQ6ZMB5 413 aa12.74□□□□□ -0.37
CLIP1-208ENST00000537004 OLIG1Q8TAK6 271 aa12.74□□□□□ -0.37
CLIP1-208ENST00000537004 KLHL5Q96PQ7 755 aa12.74□□□□□ -0.37
CLIP1-208ENST00000537004 MMS19Q96T76 1030 aa12.74□□□□□ -0.37
CLIP1-208ENST00000537004 S1PR5Q9H228 398 aa12.74□□□□□ -0.37
CLIP1-208ENST00000537004 KIAA1586Q9HCI6 787 aa12.74□□□□□ -0.37
CLIP1-208ENST00000537004 TOPORSQ9NS56 1045 aaPredicted RBP12.74□□□□□ -0.37
CLIP1-208ENST00000537004 CHST7Q9NS84 486 aa12.74□□□□□ -0.37
CLIP1-208ENST00000537004 ARGLU1Q9NWB6 273 aaPredicted RBP12.74□□□□□ -0.37
CLIP1-208ENST00000537004 STYXL1Q9Y6J8 313 aa12.74□□□□□ -0.37
CLIP1-208ENST00000537004 ZNF233A6NK53 670 aa12.73□□□□□ -0.37
CLIP1-208ENST00000537004 I3L4J1 428 aa12.73□□□□□ -0.37
CLIP1-208ENST00000537004 ZNF185O15231 689 aa12.73□□□□□ -0.37
CLIP1-208ENST00000537004 TEX28O15482 410 aa12.73□□□□□ -0.37
CLIP1-208ENST00000537004 FAM189A1O60320 539 aa12.73□□□□□ -0.37
CLIP1-208ENST00000537004 B3GAT3O94766 335 aa12.73□□□□□ -0.37
CLIP1-208ENST00000537004 DLATP10515 647 aaKnown RBP12.73□□□□□ -0.37
CLIP1-208ENST00000537004 PRLRP16471 622 aa12.73□□□□□ -0.37
CLIP1-208ENST00000537004 SP100P23497 879 aaPredicted RBP12.73□□□□□ -0.37
CLIP1-208ENST00000537004 SSTR3P32745 418 aaPredicted RBP12.73□□□□□ -0.37
CLIP1-208ENST00000537004 GTF2H1P32780 548 aa12.73□□□□□ -0.37
CLIP1-208ENST00000537004 ZP2Q05996 745 aa12.73□□□□□ -0.37
CLIP1-208ENST00000537004 CKAP4Q07065 602 aaKnown RBP12.73□□□□□ -0.37
CLIP1-208ENST00000537004 PUS10Q3MIT2 529 aaKnown RBP12.73□□□□□ -0.37
CLIP1-208ENST00000537004 XKR4Q5GH76 650 aa12.73□□□□□ -0.37
CLIP1-208ENST00000537004 PRSS55Q6UWB4 352 aaPredicted RBP12.73□□□□□ -0.37
CLIP1-208ENST00000537004 CD300LGQ6UXG3 332 aa12.73□□□□□ -0.37
CLIP1-208ENST00000537004 APBB1IPQ7Z5R6 666 aaPredicted RBP12.73□□□□□ -0.37
CLIP1-208ENST00000537004 CEP57Q86XR8 500 aa12.73□□□□□ -0.37
CLIP1-208ENST00000537004 GJD3Q8N144 294 aa12.73□□□□□ -0.37
CLIP1-208ENST00000537004 SLC30A5Q8TAD4 765 aa12.73□□□□□ -0.37
CLIP1-208ENST00000537004 LNX1Q8TBB1 728 aaPredicted RBP12.73□□□□□ -0.37
CLIP1-208ENST00000537004 RIN2Q8WYP3 895 aaPredicted RBP12.73□□□□□ -0.37
CLIP1-208ENST00000537004 SEMA4DQ92854 862 aa12.73□□□□□ -0.37
CLIP1-208ENST00000537004 ARID3AQ99856 593 aa12.73□□□□□ -0.37
CLIP1-208ENST00000537004 SYT11Q9BT88 431 aa12.73□□□□□ -0.37
CLIP1-208ENST00000537004 HERC2P3Q9BVR0 1158 aa12.73□□□□□ -0.37
CLIP1-208ENST00000537004 COQ4Q9Y3A0 265 aa12.73□□□□□ -0.37
CLIP1-208ENST00000537004 KIAA0391O15091 583 aaKnown RBP12.72□□□□□ -0.37
CLIP1-208ENST00000537004 PALMO75781 387 aa12.72□□□□□ -0.37
CLIP1-208ENST00000537004 SPATA31D3P0C874 917 aa12.72□□□□□ -0.37
CLIP1-208ENST00000537004 GLUD2P49448 558 aa12.72□□□□□ -0.37
CLIP1-208ENST00000537004 CLCN4P51793 760 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms