RNA–Protein interactions for RNA: ENST00000536483.1

PRKDC-207, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 2

Gene PRKDC, Length 834 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-207ENST00000536483 GDAP2Q9NXN4 497 aa13.4□□□□□ -0.26
PRKDC-207ENST00000536483 GMEB2Q9UKD1 530 aa13.4□□□□□ -0.26
PRKDC-207ENST00000536483 USP18Q9UMW8 372 aa13.4□□□□□ -0.26
PRKDC-207ENST00000536483 SLC27A5Q9Y2P5 690 aa13.4□□□□□ -0.26
PRKDC-207ENST00000536483 TICRRQ7Z2Z1 1910 aa13.39□□□□□ -0.27
PRKDC-207ENST00000536483 KPNA7A9QM74 516 aa13.39□□□□□ -0.27
PRKDC-207ENST00000536483 RHOBTB3O94955 611 aa13.39□□□□□ -0.27
PRKDC-207ENST00000536483 SDHBP21912 280 aa13.39□□□□□ -0.27
PRKDC-207ENST00000536483 CXCL12P48061 93 aa13.39□□□□□ -0.27
PRKDC-207ENST00000536483 CCR3P51677 355 aa13.39□□□□□ -0.27
PRKDC-207ENST00000536483 EPHB3P54753 998 aa13.39□□□□□ -0.27
PRKDC-207ENST00000536483 NRLP54845 237 aa13.39□□□□□ -0.27
PRKDC-207ENST00000536483 MCCD1P59942 119 aaPredicted RBP13.39□□□□□ -0.27
PRKDC-207ENST00000536483 CLDN10P78369 228 aa13.39□□□□□ -0.27
PRKDC-207ENST00000536483 SATB1Q01826 763 aa13.39□□□□□ -0.27
PRKDC-207ENST00000536483 LMNB2Q03252 620 aa13.39□□□□□ -0.27
PRKDC-207ENST00000536483 PLD1Q13393 1074 aa13.39□□□□□ -0.27
PRKDC-207ENST00000536483 GAS6Q14393 721 aa13.39□□□□□ -0.27
PRKDC-207ENST00000536483 PPP2R5DQ14738 602 aa13.39□□□□□ -0.27
PRKDC-207ENST00000536483 SV2CQ496J9 727 aa13.39□□□□□ -0.27
PRKDC-207ENST00000536483 STXBP5Q5T5C0 1151 aa13.39□□□□□ -0.27
PRKDC-207ENST00000536483 KRBA2Q6ZNG9 492 aa13.39□□□□□ -0.27
PRKDC-207ENST00000536483 HS2ST1Q7LGA3 356 aa13.39□□□□□ -0.27
PRKDC-207ENST00000536483 CBWD2Q8IUF1 395 aa13.39□□□□□ -0.27
PRKDC-207ENST00000536483 YAF2Q8IY57 180 aa13.39□□□□□ -0.27
PRKDC-207ENST00000536483 GRAMD1CQ8IYS0 662 aa13.39□□□□□ -0.27
PRKDC-207ENST00000536483 XXYLT1Q8NBI6 393 aa13.39□□□□□ -0.27
PRKDC-207ENST00000536483 KIAA0895Q8NCT3 520 aa13.39□□□□□ -0.27
PRKDC-207ENST00000536483 CSGALNACT1Q8TDX6 532 aa13.39□□□□□ -0.27
PRKDC-207ENST00000536483 E2F7Q96AV8 911 aa13.39□□□□□ -0.27
PRKDC-207ENST00000536483 ZNF560Q96MR9 790 aa13.39□□□□□ -0.27
PRKDC-207ENST00000536483 PCIF1Q9H4Z3 704 aa13.39□□□□□ -0.27
PRKDC-207ENST00000536483 PDE11AQ9HCR9 933 aa13.39□□□□□ -0.27
PRKDC-207ENST00000536483 SLC39A2Q9NP94 309 aa13.39□□□□□ -0.27
PRKDC-207ENST00000536483 PARD6AQ9NPB6 346 aa13.39□□□□□ -0.27
PRKDC-207ENST00000536483 SIX4Q9UIU6 781 aa13.39□□□□□ -0.27
PRKDC-207ENST00000536483 ANK1P16157 1881 aa13.39□□□□□ -0.27
PRKDC-207ENST00000536483 COL4A2P08572 1712 aa13.39□□□□□ -0.27
PRKDC-207ENST00000536483 GOLGA8IPA6NC78 632 aa13.38□□□□□ -0.27
PRKDC-207ENST00000536483 GOLGA8JA6NMD2 632 aa13.38□□□□□ -0.27
PRKDC-207ENST00000536483 SLC38A8A6NNN8 435 aa13.38□□□□□ -0.27
PRKDC-207ENST00000536483 PRR5-ARHGAP8B1AHC4 643 aa13.38□□□□□ -0.27
PRKDC-207ENST00000536483 PDXKO00764 312 aa13.38□□□□□ -0.27
PRKDC-207ENST00000536483 CYB561D2O14569 222 aa13.38□□□□□ -0.27
PRKDC-207ENST00000536483 CHADO15335 359 aa13.38□□□□□ -0.27
PRKDC-207ENST00000536483 PRPF40AO75400 957 aaKnown RBP13.38□□□□□ -0.27
PRKDC-207ENST00000536483 SOAT2O75908 522 aa13.38□□□□□ -0.27
PRKDC-207ENST00000536483 ZNF202O95125 648 aa13.38□□□□□ -0.27
PRKDC-207ENST00000536483 FAM163BP0C2L3 166 aa13.38□□□□□ -0.27
PRKDC-207ENST00000536483 ALDH1A3P47895 512 aa13.38□□□□□ -0.27
PRKDC-207ENST00000536483 SOX9P48436 509 aa13.38□□□□□ -0.27
PRKDC-207ENST00000536483 KPNA1P52294 538 aaPredicted RBP13.38□□□□□ -0.27
PRKDC-207ENST00000536483 RBP5P82980 135 aa13.38□□□□□ -0.27
PRKDC-207ENST00000536483 ARHGAP8P85298 464 aa13.38□□□□□ -0.27
PRKDC-207ENST00000536483 TFAMQ00059 246 aaKnown RBP13.38□□□□□ -0.27
PRKDC-207ENST00000536483 DPYDQ12882 1025 aa13.38□□□□□ -0.27
PRKDC-207ENST00000536483 KCNB1Q14721 858 aa13.38□□□□□ -0.27
PRKDC-207ENST00000536483 PSMD6Q15008 389 aa13.38□□□□□ -0.27
PRKDC-207ENST00000536483 SNRNP35Q16560 246 aaKnown RBP13.38□□□□□ -0.27
PRKDC-207ENST00000536483 NFIL3Q16649 462 aa13.38□□□□□ -0.27
PRKDC-207ENST00000536483 DUOXA2Q1HG44 320 aa13.38□□□□□ -0.27
PRKDC-207ENST00000536483 KMT5BQ4FZB7 885 aa13.38□□□□□ -0.27
PRKDC-207ENST00000536483 CENPPQ6IPU0 288 aa13.38□□□□□ -0.27
PRKDC-207ENST00000536483 DPH6Q7L8W6 267 aa13.38□□□□□ -0.27
PRKDC-207ENST00000536483 WDR49Q8IV35 697 aa13.38□□□□□ -0.27
PRKDC-207ENST00000536483 ARID3BQ8IVW6 561 aaPredicted RBP13.38□□□□□ -0.27
PRKDC-207ENST00000536483 CELF5Q8N6W0 485 aaKnown RBP13.38□□□□□ -0.27
PRKDC-207ENST00000536483 ATAD1Q8NBU5 361 aa13.38□□□□□ -0.27
PRKDC-207ENST00000536483 C2orf15Q8WU43 125 aaKnown RBP13.38□□□□□ -0.27
PRKDC-207ENST00000536483 TMEM209Q96SK2 561 aa13.38□□□□□ -0.27
PRKDC-207ENST00000536483 ZCWPW1Q9H0M4 648 aa13.38□□□□□ -0.27
PRKDC-207ENST00000536483 GZF1Q9H116 711 aaPredicted RBP13.38□□□□□ -0.27
PRKDC-207ENST00000536483 KCTD10Q9H3F6 313 aa13.38□□□□□ -0.27
PRKDC-207ENST00000536483 RBM12Q9NTZ6 932 aaKnown RBP13.38□□□□□ -0.27
PRKDC-207ENST00000536483 CDV3Q9UKY7 258 aaKnown RBP13.38□□□□□ -0.27
PRKDC-207ENST00000536483 RAB23Q9ULC3 237 aa13.38□□□□□ -0.27
PRKDC-207ENST00000536483 TPRP12270 2363 aaKnown RBP13.37□□□□□ -0.27
PRKDC-207ENST00000536483 MTMR11A4FU01 709 aa13.37□□□□□ -0.27
PRKDC-207ENST00000536483 GABRDO14764 452 aa13.37□□□□□ -0.27
PRKDC-207ENST00000536483 RPN1P04843 607 aaKnown RBP13.37□□□□□ -0.27
PRKDC-207ENST00000536483 ITGB3P05106 788 aa13.37□□□□□ -0.27
PRKDC-207ENST00000536483 MLLT6P55198 1093 aaPredicted RBP13.37□□□□□ -0.27
PRKDC-207ENST00000536483 CYP24A1Q07973 514 aa13.37□□□□□ -0.27
PRKDC-207ENST00000536483 DMWDQ09019 674 aa13.37□□□□□ -0.27
PRKDC-207ENST00000536483 FCHO2Q0JRZ9 810 aa13.37□□□□□ -0.27
PRKDC-207ENST00000536483 SPEM2Q0P670 501 aa13.37□□□□□ -0.27
PRKDC-207ENST00000536483 PRR23BQ6ZRT6 265 aa13.37□□□□□ -0.27
PRKDC-207ENST00000536483 GAREM2Q75VX8 874 aa13.37□□□□□ -0.27
PRKDC-207ENST00000536483 DNAJB7Q7Z6W7 309 aaPredicted RBP13.37□□□□□ -0.27
PRKDC-207ENST00000536483 ELOA2Q8IYF1 753 aaPredicted RBP13.37□□□□□ -0.27
PRKDC-207ENST00000536483 FMR1NBQ8N0W7 255 aaPredicted RBP13.37□□□□□ -0.27
PRKDC-207ENST00000536483 TMEM86AQ8N2M4 240 aa13.37□□□□□ -0.27
PRKDC-207ENST00000536483 TTC9BQ8N6N2 239 aa13.37□□□□□ -0.27
PRKDC-207ENST00000536483 FSIP1Q8NA03 581 aa13.37□□□□□ -0.27
PRKDC-207ENST00000536483 ENGASEQ8NFI3 743 aa13.37□□□□□ -0.27
PRKDC-207ENST00000536483 OR10T2Q8NGX3 314 aa13.37□□□□□ -0.27
PRKDC-207ENST00000536483 TTC8Q8TAM2 541 aa13.37□□□□□ -0.27
PRKDC-207ENST00000536483 LRRC3BQ96PB8 259 aa13.37□□□□□ -0.27
PRKDC-207ENST00000536483 MKNK1Q9BUB5 465 aa13.37□□□□□ -0.27
PRKDC-207ENST00000536483 ATXN3LQ9H3M9 355 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms