RNA–Protein interactions for RNA: ENST00000535915.5

LDLR-203, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-203ENST00000535915 RAP1GAPP47736 663 aa13.86□□□□□ -0.19
LDLR-203ENST00000535915 DYNLT1P63172 113 aa13.86□□□□□ -0.19
LDLR-203ENST00000535915 XRCC4Q13426 336 aa13.86□□□□□ -0.19
LDLR-203ENST00000535915 FAM133BQ5BKY9 247 aaKnown RBP13.86□□□□□ -0.19
LDLR-203ENST00000535915 CYB5D1Q6P9G0 228 aa13.86□□□□□ -0.19
LDLR-203ENST00000535915 EXOC8Q8IYI6 725 aa13.86□□□□□ -0.19
LDLR-203ENST00000535915 NIPA2Q8N8Q9 360 aa13.86□□□□□ -0.19
LDLR-203ENST00000535915 TTC25Q96NG3 672 aa13.86□□□□□ -0.19
LDLR-203ENST00000535915 TGS1Q96RS0 853 aaKnown RBP13.86□□□□□ -0.19
LDLR-203ENST00000535915 ZWILCHQ9H900 591 aa13.86□□□□□ -0.19
LDLR-203ENST00000535915 ABCF3Q9NUQ8 709 aa13.86□□□□□ -0.19
LDLR-203ENST00000535915 PAPPA2Q9BXP8 1791 aa13.86□□□□□ -0.19
LDLR-203ENST00000535915 KRT3P12035 628 aa13.86□□□□□ -0.19
LDLR-203ENST00000535915 POLR2BP30876 1174 aaKnown RBP13.86□□□□□ -0.19
LDLR-203ENST00000535915 PTPN7P35236 360 aa13.86□□□□□ -0.19
LDLR-203ENST00000535915 YWHAEP62258 255 aaKnown RBP13.86□□□□□ -0.19
LDLR-203ENST00000535915 FASTKD3Q14CZ7 662 aaKnown RBP13.86□□□□□ -0.19
LDLR-203ENST00000535915 OASLQ15646 514 aaKnown RBP13.86□□□□□ -0.19
LDLR-203ENST00000535915 ZKSCAN8Q15776 578 aaPredicted RBP13.86□□□□□ -0.19
LDLR-203ENST00000535915 SMTNL2Q2TAL5 461 aa13.86□□□□□ -0.19
LDLR-203ENST00000535915 WDR72Q3MJ13 1102 aa13.86□□□□□ -0.19
LDLR-203ENST00000535915 PTPN20Q4JDL3 420 aa13.86□□□□□ -0.19
LDLR-203ENST00000535915 CAPN12Q6ZSI9 719 aa13.86□□□□□ -0.19
LDLR-203ENST00000535915 TSHZ1Q6ZSZ6 1077 aa13.86□□□□□ -0.19
LDLR-203ENST00000535915 RIBC1Q8N443 379 aaPredicted RBP13.86□□□□□ -0.19
LDLR-203ENST00000535915 MPHOSPH6Q99547 160 aaKnown RBP13.86□□□□□ -0.19
LDLR-203ENST00000535915 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP13.86□□□□□ -0.19
LDLR-203ENST00000535915 GGT7Q9UJ14 662 aa13.86□□□□□ -0.19
LDLR-203ENST00000535915 POC1B-GALNT4F8VUJ3 575 aa13.85□□□□□ -0.19
LDLR-203ENST00000535915 ACKR2O00590 384 aa13.85□□□□□ -0.19
LDLR-203ENST00000535915 SUN1O94901 812 aa13.85□□□□□ -0.19
LDLR-203ENST00000535915 OAS1P00973 400 aaKnown RBP13.85□□□□□ -0.19
LDLR-203ENST00000535915 ITGAVP06756 1048 aa13.85□□□□□ -0.19
LDLR-203ENST00000535915 MORF4L2Q15014 288 aa13.85□□□□□ -0.19
LDLR-203ENST00000535915 TMEM63BQ5T3F8 832 aa13.85□□□□□ -0.19
LDLR-203ENST00000535915 SGSM3Q96HU1 749 aa13.85□□□□□ -0.19
LDLR-203ENST00000535915 SPATA33Q96N06 139 aa13.85□□□□□ -0.19
LDLR-203ENST00000535915 VPS37BQ9H9H4 285 aa13.85□□□□□ -0.19
LDLR-203ENST00000535915 EURLQ9NYK6 297 aa13.85□□□□□ -0.19
LDLR-203ENST00000535915 SAE1Q9UBE0 346 aaPredicted RBP13.85□□□□□ -0.19
LDLR-203ENST00000535915 TJP2Q9UDY2 1190 aa13.85□□□□□ -0.19
LDLR-203ENST00000535915 SLC12A4Q9UP95 1085 aa13.85□□□□□ -0.19
LDLR-203ENST00000535915 IGKV6-21A0A0C4DH24 114 aa13.85□□□□□ -0.19
LDLR-203ENST00000535915 MED7O43513 233 aa13.85□□□□□ -0.19
LDLR-203ENST00000535915 GSTA1P08263 222 aa13.85□□□□□ -0.19
LDLR-203ENST00000535915 CXCL8P10145 99 aa13.85□□□□□ -0.19
LDLR-203ENST00000535915 PROZP22891 400 aa13.85□□□□□ -0.19
LDLR-203ENST00000535915 PSMC4P43686 418 aa13.85□□□□□ -0.19
LDLR-203ENST00000535915 ORC1Q13415 861 aa13.85□□□□□ -0.19
LDLR-203ENST00000535915 TFDP1Q14186 410 aa13.85□□□□□ -0.19
LDLR-203ENST00000535915 KCNT1Q5JUK3 1230 aa13.85□□□□□ -0.19
LDLR-203ENST00000535915 CELF3Q5SZQ8 465 aaKnown RBP13.85□□□□□ -0.19
LDLR-203ENST00000535915 EEF1DP3Q658K8 133 aa13.85□□□□□ -0.19
LDLR-203ENST00000535915 PPP1R21Q6ZMI0 780 aa13.85□□□□□ -0.19
LDLR-203ENST00000535915 DHX37Q8IY37 1157 aaKnown RBP13.85□□□□□ -0.19
LDLR-203ENST00000535915 ZBED8Q8IZ13 594 aa13.85□□□□□ -0.19
LDLR-203ENST00000535915 JOSD2Q8TAC2 188 aa13.85□□□□□ -0.19
LDLR-203ENST00000535915 NKD2Q969F2 451 aaPredicted RBP13.85□□□□□ -0.19
LDLR-203ENST00000535915 ZBTB10Q96DT7 871 aa13.85□□□□□ -0.19
LDLR-203ENST00000535915 SYNCQ9H7C4 482 aa13.85□□□□□ -0.19
LDLR-203ENST00000535915 PTPRHQ9HD43 1115 aa13.85□□□□□ -0.19
LDLR-203ENST00000535915 ACTL7BQ9Y614 415 aa13.85□□□□□ -0.19
LDLR-203ENST00000535915 B4GALT4O60513 344 aa13.84□□□□□ -0.19
LDLR-203ENST00000535915 LGR5O75473 907 aa13.84□□□□□ -0.19
LDLR-203ENST00000535915 CDH8P55286 799 aa13.84□□□□□ -0.19
LDLR-203ENST00000535915 PSMC1P62191 440 aaKnown RBP13.84□□□□□ -0.19
LDLR-203ENST00000535915 ZNF667Q5HYK9 610 aa13.84□□□□□ -0.19
LDLR-203ENST00000535915 PLPPR4Q7Z2D5 763 aa13.84□□□□□ -0.19
LDLR-203ENST00000535915 POLNQ7Z5Q5 900 aa13.84□□□□□ -0.19
LDLR-203ENST00000535915 PARP9Q8IXQ6 854 aa13.84□□□□□ -0.19
LDLR-203ENST00000535915 TMEM192Q8IY95 271 aa13.84□□□□□ -0.19
LDLR-203ENST00000535915 GPC2Q8N158 579 aa13.84□□□□□ -0.19
LDLR-203ENST00000535915 MAML1Q92585 1016 aa13.84□□□□□ -0.19
LDLR-203ENST00000535915 MAGEB18Q96M61 343 aa13.84□□□□□ -0.19
LDLR-203ENST00000535915 PAIP2Q9BPZ3 127 aaKnown RBP13.84□□□□□ -0.19
LDLR-203ENST00000535915 RPF1Q9H9Y2 349 aaKnown RBP13.84□□□□□ -0.19
LDLR-203ENST00000535915 PCDH9Q9HC56 1237 aa13.84□□□□□ -0.19
LDLR-203ENST00000535915 CYTH4Q9UIA0 394 aa13.84□□□□□ -0.19
LDLR-203ENST00000535915 SIGLEC16A6NMB1 481 aa13.84□□□□□ -0.19
LDLR-203ENST00000535915 GOLGA8MH3BSY2 632 aa13.84□□□□□ -0.19
LDLR-203ENST00000535915 IRF6O14896 467 aa13.84□□□□□ -0.19
LDLR-203ENST00000535915 LRCH4O75427 683 aa13.84□□□□□ -0.19
LDLR-203ENST00000535915 CLCN3P51790 818 aa13.84□□□□□ -0.19
LDLR-203ENST00000535915 HADHQ16836 314 aaKnown RBP13.84□□□□□ -0.19
LDLR-203ENST00000535915 RNASEH2BQ5TBB1 312 aaKnown RBP13.84□□□□□ -0.19
LDLR-203ENST00000535915 EFCAB12Q6NXP0 572 aa13.84□□□□□ -0.19
LDLR-203ENST00000535915 CENPUQ71F23 418 aa13.84□□□□□ -0.19
LDLR-203ENST00000535915 SPATA21Q7Z572 469 aa13.84□□□□□ -0.19
LDLR-203ENST00000535915 OTUD5Q96G74 571 aa13.84□□□□□ -0.19
LDLR-203ENST00000535915 FZD8Q9H461 694 aa13.84□□□□□ -0.19
LDLR-203ENST00000535915 FAM47DPA6NHR8 397 aa13.83□□□□□ -0.19
LDLR-203ENST00000535915 SPAG7O75391 227 aa13.83□□□□□ -0.19
LDLR-203ENST00000535915 KRT7P08729 469 aa13.83□□□□□ -0.19
LDLR-203ENST00000535915 GCAP28676 217 aa13.83□□□□□ -0.19
LDLR-203ENST00000535915 SLC25A11Q02978 314 aaKnown RBP13.83□□□□□ -0.19
LDLR-203ENST00000535915 MKRN3Q13064 507 aaKnown RBP13.83□□□□□ -0.19
LDLR-203ENST00000535915 PDIA2Q13087 525 aaKnown RBP13.83□□□□□ -0.19
LDLR-203ENST00000535915 SNCBQ16143 134 aa13.83□□□□□ -0.19
LDLR-203ENST00000535915 FBXO16Q8IX29 292 aaPredicted RBP13.83□□□□□ -0.19
LDLR-203ENST00000535915 EMC1Q8N766 993 aa13.83□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms