RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 ATF6P18850 670 aa16.07■□□□□ 0.16
CPSF1-208ENST00000532560 GNL1P36915 607 aaPredicted RBP16.07■□□□□ 0.16
CPSF1-208ENST00000532560 ASPAP45381 313 aa16.07■□□□□ 0.16
CPSF1-208ENST00000532560 STX17P56962 302 aa16.07■□□□□ 0.16
CPSF1-208ENST00000532560 PSMC1P62191 440 aaKnown RBP16.07■□□□□ 0.16
CPSF1-208ENST00000532560 MAPRE1Q15691 268 aaKnown RBP16.07■□□□□ 0.16
CPSF1-208ENST00000532560 CCDC142Q17RM4 750 aa16.07■□□□□ 0.16
CPSF1-208ENST00000532560 MGAT5BQ3V5L5 792 aa16.07■□□□□ 0.16
CPSF1-208ENST00000532560 CFAP221Q4G0U5 840 aa16.07■□□□□ 0.16
CPSF1-208ENST00000532560 CCDC40Q4G0X9 1142 aa16.07■□□□□ 0.16
CPSF1-208ENST00000532560 PRSS36Q5K4E3 855 aa16.07■□□□□ 0.16
CPSF1-208ENST00000532560 SCARA5Q6ZMJ2 495 aa16.07■□□□□ 0.16
CPSF1-208ENST00000532560 CCDC150Q8NCX0 1101 aa16.07■□□□□ 0.16
CPSF1-208ENST00000532560 FBXL13Q8NEE6 735 aa16.07■□□□□ 0.16
CPSF1-208ENST00000532560 OR6B3Q8NGW1 331 aa16.07■□□□□ 0.16
CPSF1-208ENST00000532560 PSMG2Q969U7 264 aa16.07■□□□□ 0.16
CPSF1-208ENST00000532560 BCO2Q9BYV7 579 aa16.07■□□□□ 0.16
CPSF1-208ENST00000532560 CRTAC1Q9NQ79 661 aa16.07■□□□□ 0.16
CPSF1-208ENST00000532560 ASAH2Q9NR71 780 aa16.07■□□□□ 0.16
CPSF1-208ENST00000532560 GTF3C4Q9UKN8 822 aa16.07■□□□□ 0.16
CPSF1-208ENST00000532560 CDH7Q9ULB5 785 aa16.07■□□□□ 0.16
CPSF1-208ENST00000532560 NME7Q9Y5B8 376 aa16.07■□□□□ 0.16
CPSF1-208ENST00000532560 MYBPHLA2RUH7 354 aa16.06■□□□□ 0.16
CPSF1-208ENST00000532560 SOAT2O75908 522 aa16.06■□□□□ 0.16
CPSF1-208ENST00000532560 MICAL2O94851 1124 aa16.06■□□□□ 0.16
CPSF1-208ENST00000532560 FGFR1OPO95684 399 aaKnown RBP16.06■□□□□ 0.16
CPSF1-208ENST00000532560 LAMP2P13473 410 aa16.06■□□□□ 0.16
CPSF1-208ENST00000532560 MARSP56192 900 aaKnown RBP16.06■□□□□ 0.16
CPSF1-208ENST00000532560 VEPH1Q14D04 833 aa16.06■□□□□ 0.16
CPSF1-208ENST00000532560 PTPN21Q16825 1174 aa16.06■□□□□ 0.16
CPSF1-208ENST00000532560 SLC5A9Q2M3M2 681 aa16.06■□□□□ 0.16
CPSF1-208ENST00000532560 CBWD6Q4V339 395 aa16.06■□□□□ 0.16
CPSF1-208ENST00000532560 CBWD3Q5JTY5 395 aa16.06■□□□□ 0.16
CPSF1-208ENST00000532560 CBWD5Q5RIA9 395 aa16.06■□□□□ 0.16
CPSF1-208ENST00000532560 CYP4A22Q5TCH4 519 aa16.06■□□□□ 0.16
CPSF1-208ENST00000532560 SPOPLQ6IQ16 392 aa16.06■□□□□ 0.16
CPSF1-208ENST00000532560 C4orf50Q6ZRC1 276 aa16.06■□□□□ 0.16
CPSF1-208ENST00000532560 RBM43Q6ZSC3 357 aaKnown RBP16.06■□□□□ 0.16
CPSF1-208ENST00000532560 PDZD4Q76G19 769 aaPredicted RBP16.06■□□□□ 0.16
CPSF1-208ENST00000532560 ITIH5Q86UX2 942 aa16.06■□□□□ 0.16
CPSF1-208ENST00000532560 TMC8Q8IU68 726 aa16.06■□□□□ 0.16
CPSF1-208ENST00000532560 SPATA2LQ8IUW3 424 aaPredicted RBP16.06■□□□□ 0.16
CPSF1-208ENST00000532560 NPAS3Q8IXF0 933 aa16.06■□□□□ 0.16
CPSF1-208ENST00000532560 ITFG1Q8TB96 612 aa16.06■□□□□ 0.16
CPSF1-208ENST00000532560 MYCBPAPQ8TBZ2 947 aa16.06■□□□□ 0.16
CPSF1-208ENST00000532560 FGF13Q92913 245 aa16.06■□□□□ 0.16
CPSF1-208ENST00000532560 ELMO3Q96BJ8 720 aa16.06■□□□□ 0.16
CPSF1-208ENST00000532560 FAXDC2Q96IV6 333 aa16.06■□□□□ 0.16
CPSF1-208ENST00000532560 PI4K2AQ9BTU6 479 aa16.06■□□□□ 0.16
CPSF1-208ENST00000532560 NIF3L1Q9GZT8 377 aa16.06■□□□□ 0.16
CPSF1-208ENST00000532560 SDCBP2Q9H190 292 aa16.06■□□□□ 0.16
CPSF1-208ENST00000532560 APOBEC3GQ9HC16 384 aaKnown RBP16.06■□□□□ 0.16
CPSF1-208ENST00000532560 LIMD1Q9UGP4 676 aa16.06■□□□□ 0.16
CPSF1-208ENST00000532560 COQ4Q9Y3A0 265 aa16.06■□□□□ 0.16
CPSF1-208ENST00000532560 MRPS23Q9Y3D9 190 aaKnown RBP16.06■□□□□ 0.16
CPSF1-208ENST00000532560 A8MXQ7 604 aa16.05■□□□□ 0.16
CPSF1-208ENST00000532560 ZNF197O14709 1029 aa16.05■□□□□ 0.16
CPSF1-208ENST00000532560 PMM2O15305 246 aa16.05■□□□□ 0.16
CPSF1-208ENST00000532560 ATP2C2O75185 946 aa16.05■□□□□ 0.16
CPSF1-208ENST00000532560 PDGFRBP09619 1106 aa16.05■□□□□ 0.16
CPSF1-208ENST00000532560 MAGEA11P43364 429 aa16.05■□□□□ 0.16
CPSF1-208ENST00000532560 RAP1GAPP47736 663 aa16.05■□□□□ 0.16
CPSF1-208ENST00000532560 CDR1P51861 262 aa16.05■□□□□ 0.16
CPSF1-208ENST00000532560 CDH8P55286 799 aa16.05■□□□□ 0.16
CPSF1-208ENST00000532560 NLRP12P59046 1061 aa16.05■□□□□ 0.16
CPSF1-208ENST00000532560 DPCR1Q3MIW9 517 aa16.05■□□□□ 0.16
CPSF1-208ENST00000532560 HS6ST3Q8IZP7 471 aa16.05■□□□□ 0.16
CPSF1-208ENST00000532560 B3GALNT2Q8NCR0 500 aa16.05■□□□□ 0.16
CPSF1-208ENST00000532560 SEMA4DQ92854 862 aa16.05■□□□□ 0.16
CPSF1-208ENST00000532560 MYLPFQ96A32 169 aa16.05■□□□□ 0.16
CPSF1-208ENST00000532560 LPIN3Q9BQK8 851 aa16.05■□□□□ 0.16
CPSF1-208ENST00000532560 LRRC3Q9BY71 257 aa16.05■□□□□ 0.16
CPSF1-208ENST00000532560 DPEP3Q9H4B8 488 aa16.05■□□□□ 0.16
CPSF1-208ENST00000532560 CYP3A43Q9HB55 503 aa16.05■□□□□ 0.16
CPSF1-208ENST00000532560 RAB20Q9NX57 234 aa16.05■□□□□ 0.16
CPSF1-208ENST00000532560 GDE1Q9NZC3 331 aa16.05■□□□□ 0.16
CPSF1-208ENST00000532560 IGSF9Q9P2J2 1179 aa16.05■□□□□ 0.16
CPSF1-208ENST00000532560 DACH1Q9UI36 760 aa16.05■□□□□ 0.16
CPSF1-208ENST00000532560 SORCS3Q9UPU3 1222 aa16.05■□□□□ 0.16
CPSF1-208ENST00000532560 PTPRDP23468 1912 aa16.05■□□□□ 0.16
CPSF1-208ENST00000532560 ASGR2P07307 311 aa16.04■□□□□ 0.16
CPSF1-208ENST00000532560 CEBPBP17676 345 aa16.04■□□□□ 0.16
CPSF1-208ENST00000532560 PTPN1P18031 435 aaKnown RBP16.04■□□□□ 0.16
CPSF1-208ENST00000532560 CYP2F1P24903 491 aa16.04■□□□□ 0.16
CPSF1-208ENST00000532560 CCR2P41597 374 aa16.04■□□□□ 0.16
CPSF1-208ENST00000532560 FMO5P49326 533 aa16.04■□□□□ 0.16
CPSF1-208ENST00000532560 RPL10AP62906 217 aaKnown RBP16.04■□□□□ 0.16
CPSF1-208ENST00000532560 INCA1Q0VD86 236 aa16.04■□□□□ 0.16
CPSF1-208ENST00000532560 MDH1BQ5I0G3 518 aa16.04■□□□□ 0.16
CPSF1-208ENST00000532560 DNAJB7Q7Z6W7 309 aaPredicted RBP16.04■□□□□ 0.16
CPSF1-208ENST00000532560 TRIM59Q8IWR1 403 aa16.04■□□□□ 0.16
CPSF1-208ENST00000532560 ING5Q8WYH8 240 aa16.04■□□□□ 0.16
CPSF1-208ENST00000532560 NXPE3Q969Y0 559 aa16.04■□□□□ 0.16
CPSF1-208ENST00000532560 TCEAL4Q96EI5 215 aa16.04■□□□□ 0.16
CPSF1-208ENST00000532560 PCED1BQ96HM7 432 aa16.04■□□□□ 0.16
CPSF1-208ENST00000532560 TNIP3Q96KP6 325 aa16.04■□□□□ 0.16
CPSF1-208ENST00000532560 MED15Q96RN5 788 aa16.04■□□□□ 0.16
CPSF1-208ENST00000532560 SRRTQ9BXP5 876 aaKnown RBP16.04■□□□□ 0.16
CPSF1-208ENST00000532560 EPHX3Q9H6B9 360 aa16.04■□□□□ 0.16
CPSF1-208ENST00000532560 ANHXE9PGG2 379 aa16.03■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms