RNA–Protein interactions for RNA: ENST00000530790.5

VPS28-211, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 561 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-211ENST00000530790 GDI1P31150 447 aa14.27□□□□□ -0.13
VPS28-211ENST00000530790 RPL10AP62906 217 aaKnown RBP14.27□□□□□ -0.13
VPS28-211ENST00000530790 TRPC3Q13507 836 aa14.27□□□□□ -0.13
VPS28-211ENST00000530790 ANGPT1Q15389 498 aa14.27□□□□□ -0.13
VPS28-211ENST00000530790 SPATA2LQ8IUW3 424 aaPredicted RBP14.27□□□□□ -0.13
VPS28-211ENST00000530790 YAF2Q8IY57 180 aa14.27□□□□□ -0.13
VPS28-211ENST00000530790 IRF7Q92985 503 aa14.27□□□□□ -0.13
VPS28-211ENST00000530790 DDX23Q9BUQ8 820 aaKnown RBP14.27□□□□□ -0.13
VPS28-211ENST00000530790 HEBP1Q9NRV9 189 aa14.27□□□□□ -0.13
VPS28-211ENST00000530790 COL4A3Q01955 1670 aa14.26□□□□□ -0.13
VPS28-211ENST00000530790 HEPACAM2A8MVW5 462 aa14.26□□□□□ -0.13
VPS28-211ENST00000530790 DPYSL4O14531 572 aa14.26□□□□□ -0.13
VPS28-211ENST00000530790 ZNF263O14978 683 aa14.26□□□□□ -0.13
VPS28-211ENST00000530790 PHACTR2O75167 634 aa14.26□□□□□ -0.13
VPS28-211ENST00000530790 CLSTN1O94985 981 aa14.26□□□□□ -0.13
VPS28-211ENST00000530790 KIF20AO95235 890 aa14.26□□□□□ -0.13
VPS28-211ENST00000530790 PRR29P0C7W0 189 aa14.26□□□□□ -0.13
VPS28-211ENST00000530790 CSH1P0DML2 217 aa14.26□□□□□ -0.13
VPS28-211ENST00000530790 CSH2P0DML3 217 aa14.26□□□□□ -0.13
VPS28-211ENST00000530790 TNNC1P63316 161 aa14.26□□□□□ -0.13
VPS28-211ENST00000530790 CYP4F8P98187 520 aa14.26□□□□□ -0.13
VPS28-211ENST00000530790 CFAP221Q4G0U5 840 aa14.26□□□□□ -0.13
VPS28-211ENST00000530790 KRBA2Q6ZNG9 492 aa14.26□□□□□ -0.13
VPS28-211ENST00000530790 C4orf50Q6ZRC1 276 aa14.26□□□□□ -0.13
VPS28-211ENST00000530790 MFSD6LQ8IWD5 586 aa14.26□□□□□ -0.13
VPS28-211ENST00000530790 KBTBD7Q8WVZ9 684 aa14.26□□□□□ -0.13
VPS28-211ENST00000530790 CCDC34Q96HJ3 373 aa14.26□□□□□ -0.13
VPS28-211ENST00000530790 FUBP3Q96I24 572 aaKnown RBP eCLIP14.26□□□□□ -0.13
VPS28-211ENST00000530790 PKMYT1Q99640 499 aa14.26□□□□□ -0.13
VPS28-211ENST00000530790 SYT15Q9BQS2 421 aa14.26□□□□□ -0.13
VPS28-211ENST00000530790 GOLPH3LQ9H4A5 285 aa14.26□□□□□ -0.13
VPS28-211ENST00000530790 IL21Q9HBE4 155 aa14.26□□□□□ -0.13
VPS28-211ENST00000530790 GDPD2Q9HCC8 539 aa14.26□□□□□ -0.13
VPS28-211ENST00000530790 LTB4R2Q9NPC1 389 aa14.26□□□□□ -0.13
VPS28-211ENST00000530790 GTF3C4Q9UKN8 822 aa14.26□□□□□ -0.13
VPS28-211ENST00000530790 CDH9Q9ULB4 789 aa14.26□□□□□ -0.13
VPS28-211ENST00000530790 NCANO14594 1321 aa14.25□□□□□ -0.13
VPS28-211ENST00000530790 PDXKO00764 312 aa14.25□□□□□ -0.13
VPS28-211ENST00000530790 HCRTO43612 131 aa14.25□□□□□ -0.13
VPS28-211ENST00000530790 NR3C1P04150 777 aa14.25□□□□□ -0.13
VPS28-211ENST00000530790 WARSP23381 471 aaKnown RBP14.25□□□□□ -0.13
VPS28-211ENST00000530790 CYP2F1P24903 491 aa14.25□□□□□ -0.13
VPS28-211ENST00000530790 CASP4P49662 377 aa14.25□□□□□ -0.13
VPS28-211ENST00000530790 GPR15P49685 360 aa14.25□□□□□ -0.13
VPS28-211ENST00000530790 AP3M2P53677 418 aa14.25□□□□□ -0.13
VPS28-211ENST00000530790 PSMC1P62191 440 aaKnown RBP14.25□□□□□ -0.13
VPS28-211ENST00000530790 BIRC3Q13489 604 aa14.25□□□□□ -0.13
VPS28-211ENST00000530790 MAPRE1Q15691 268 aaKnown RBP14.25□□□□□ -0.13
VPS28-211ENST00000530790 CCDC142Q17RM4 750 aa14.25□□□□□ -0.13
VPS28-211ENST00000530790 ZNF852Q6ZMS4 543 aa14.25□□□□□ -0.13
VPS28-211ENST00000530790 LIMS2Q7Z4I7 341 aa14.25□□□□□ -0.13
VPS28-211ENST00000530790 SLC9A9Q8IVB4 645 aa14.25□□□□□ -0.13
VPS28-211ENST00000530790 ARID3BQ8IVW6 561 aaPredicted RBP14.25□□□□□ -0.13
VPS28-211ENST00000530790 SYAP1Q96A49 352 aaPredicted RBP14.25□□□□□ -0.13
VPS28-211ENST00000530790 MKNK1Q9BUB5 465 aa14.25□□□□□ -0.13
VPS28-211ENST00000530790 BCO2Q9BYV7 579 aa14.25□□□□□ -0.13
VPS28-211ENST00000530790 OSBPL6Q9BZF3 934 aa14.25□□□□□ -0.13
VPS28-211ENST00000530790 GZF1Q9H116 711 aaPredicted RBP14.25□□□□□ -0.13
VPS28-211ENST00000530790 SNX25Q9H3E2 840 aa14.25□□□□□ -0.13
VPS28-211ENST00000530790 KCTD10Q9H3F6 313 aa14.25□□□□□ -0.13
VPS28-211ENST00000530790 TASP1Q9H6P5 420 aa14.25□□□□□ -0.13
VPS28-211ENST00000530790 TRPV5Q9NQA5 729 aa14.25□□□□□ -0.13
VPS28-211ENST00000530790 DLGAP2Q9P1A6 1054 aa14.25□□□□□ -0.13
VPS28-211ENST00000530790 UXTQ9UBK9 157 aaPredicted RBP14.25□□□□□ -0.13
VPS28-211ENST00000530790 ZMYM5Q9UJ78 669 aa14.25□□□□□ -0.13
VPS28-211ENST00000530790 MAGED2Q9UNF1 606 aaPredicted RBP14.25□□□□□ -0.13
VPS28-211ENST00000530790 MRPS17Q9Y2R5 130 aaKnown RBP14.25□□□□□ -0.13
VPS28-211ENST00000530790 CACNA1HO95180 2353 aa14.24□□□□□ -0.13
VPS28-211ENST00000530790 MYBPHLA2RUH7 354 aa14.24□□□□□ -0.13
VPS28-211ENST00000530790 FAM170BA6NMN3 283 aa14.24□□□□□ -0.13
VPS28-211ENST00000530790 LRRIQ3A6PVS8 624 aaPredicted RBP14.24□□□□□ -0.13
VPS28-211ENST00000530790 CALUO43852 315 aaPredicted RBP14.24□□□□□ -0.13
VPS28-211ENST00000530790 LRRN2O75325 713 aa14.24□□□□□ -0.13
VPS28-211ENST00000530790 RHOBTB3O94955 611 aa14.24□□□□□ -0.13
VPS28-211ENST00000530790 STAU1O95793 577 aaKnown RBP14.24□□□□□ -0.13
VPS28-211ENST00000530790 CD72P21854 359 aa14.24□□□□□ -0.13
VPS28-211ENST00000530790 DDX6P26196 483 aaKnown RBP eCLIP14.24□□□□□ -0.13
VPS28-211ENST00000530790 ATICP31939 592 aa14.24□□□□□ -0.13
VPS28-211ENST00000530790 NBL1P41271 181 aa14.24□□□□□ -0.13
VPS28-211ENST00000530790 MAGEA9P43362 315 aa14.24□□□□□ -0.13
VPS28-211ENST00000530790 NLRP12P59046 1061 aa14.24□□□□□ -0.13
VPS28-211ENST00000530790 NUCB2P80303 420 aa14.24□□□□□ -0.13
VPS28-211ENST00000530790 FCHO2Q0JRZ9 810 aa14.24□□□□□ -0.13
VPS28-211ENST00000530790 DPYDQ12882 1025 aa14.24□□□□□ -0.13
VPS28-211ENST00000530790 WDR72Q3MJ13 1102 aa14.24□□□□□ -0.13
VPS28-211ENST00000530790 SDHAF4Q5VUM1 108 aa14.24□□□□□ -0.13
VPS28-211ENST00000530790 SCN4BQ8IWT1 228 aa14.24□□□□□ -0.13
VPS28-211ENST00000530790 STKLD1Q8NE28 680 aa14.24□□□□□ -0.13
VPS28-211ENST00000530790 CSGALNACT1Q8TDX6 532 aa14.24□□□□□ -0.13
VPS28-211ENST00000530790 PARD3BQ8TEW8 1205 aa14.24□□□□□ -0.13
VPS28-211ENST00000530790 TMEM174Q8WUU8 243 aa14.24□□□□□ -0.13
VPS28-211ENST00000530790 MYLPFQ96A32 169 aa14.24□□□□□ -0.13
VPS28-211ENST00000530790 RSPRY1Q96DX4 576 aa14.24□□□□□ -0.13
VPS28-211ENST00000530790 NELL2Q99435 816 aa14.24□□□□□ -0.13
VPS28-211ENST00000530790 MRPL45Q9BRJ2 306 aaKnown RBP14.24□□□□□ -0.13
VPS28-211ENST00000530790 DMAC2Q9NW81 257 aa14.24□□□□□ -0.13
VPS28-211ENST00000530790 OBP2AQ9NY56 170 aa14.24□□□□□ -0.13
VPS28-211ENST00000530790 PIAS3Q9Y6X2 628 aa14.24□□□□□ -0.13
VPS28-211ENST00000530790 COL4A2P08572 1712 aa14.24□□□□□ -0.13
VPS28-211ENST00000530790 GOLGA6L4A6NEF3 574 aa14.23□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms