RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 IFT81Q8WYA0 676 aa21.9■■□□□ 1.1
VPS28-209ENST00000528142 A0A0U1RQG5 324 aaPredicted RBP21.9■■□□□ 1.1
VPS28-209ENST00000528142 PTGESO14684 152 aa21.9■■□□□ 1.1
VPS28-209ENST00000528142 SPTLC1O15269 473 aa21.9■■□□□ 1.1
VPS28-209ENST00000528142 RARAP10276 462 aa21.9■■□□□ 1.1
VPS28-209ENST00000528142 C1QTNF8P60827 252 aa21.9■■□□□ 1.1
VPS28-209ENST00000528142 ZNF268Q14587 947 aaPredicted RBP21.9■■□□□ 1.1
VPS28-209ENST00000528142 DCUN1D2Q6PH85 259 aa21.9■■□□□ 1.1
VPS28-209ENST00000528142 LIMS2Q7Z4I7 341 aa21.9■■□□□ 1.1
VPS28-209ENST00000528142 XYLT1Q86Y38 959 aa21.9■■□□□ 1.1
VPS28-209ENST00000528142 KATNAL2Q8IYT4 538 aa21.9■■□□□ 1.1
VPS28-209ENST00000528142 NIPA2Q8N8Q9 360 aa21.9■■□□□ 1.1
VPS28-209ENST00000528142 GDAP2Q9NXN4 497 aa21.9■■□□□ 1.1
VPS28-209ENST00000528142 WDR35Q9P2L0 1181 aa21.9■■□□□ 1.1
VPS28-209ENST00000528142 DDX20Q9UHI6 824 aaKnown RBP21.9■■□□□ 1.1
VPS28-209ENST00000528142 HPCAL4Q9UM19 191 aa21.9■■□□□ 1.1
VPS28-209ENST00000528142 MYCNP04198 464 aaPredicted RBP21.89■■□□□ 1.09
VPS28-209ENST00000528142 PFKMP08237 780 aa21.89■■□□□ 1.09
VPS28-209ENST00000528142 ECHS1P30084 290 aa21.89■■□□□ 1.09
VPS28-209ENST00000528142 CHRNA3P32297 505 aa21.89■■□□□ 1.09
VPS28-209ENST00000528142 PNPLA4P41247 253 aa21.89■■□□□ 1.09
VPS28-209ENST00000528142 PSMC1P62191 440 aaKnown RBP21.89■■□□□ 1.09
VPS28-209ENST00000528142 PDCLQ13371 301 aa21.89■■□□□ 1.09
VPS28-209ENST00000528142 NNTQ13423 1086 aa21.89■■□□□ 1.09
VPS28-209ENST00000528142 CUL1Q13616 776 aa21.89■■□□□ 1.09
VPS28-209ENST00000528142 STILQ15468 1287 aa21.89■■□□□ 1.09
VPS28-209ENST00000528142 PTGISQ16647 500 aa21.89■■□□□ 1.09
VPS28-209ENST00000528142 UNC93AQ86WB7 457 aa21.89■■□□□ 1.09
VPS28-209ENST00000528142 C12orf29Q8N999 325 aa21.89■■□□□ 1.09
VPS28-209ENST00000528142 UBA3Q8TBC4 463 aa21.89■■□□□ 1.09
VPS28-209ENST00000528142 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP21.89■■□□□ 1.09
VPS28-209ENST00000528142 FAM105AQ9NUU6 356 aa21.89■■□□□ 1.09
VPS28-209ENST00000528142 MTUS1Q9ULD2 1270 aa21.89■■□□□ 1.09
VPS28-209ENST00000528142 USTQ9Y2C2 406 aa21.89■■□□□ 1.09
VPS28-209ENST00000528142 TRIP11Q15643 1979 aa21.89■■□□□ 1.09
VPS28-209ENST00000528142 KPNA7A9QM74 516 aa21.88■■□□□ 1.09
VPS28-209ENST00000528142 LRPAP1P30533 357 aa21.88■■□□□ 1.09
VPS28-209ENST00000528142 PTGIRP43119 386 aa21.88■■□□□ 1.09
VPS28-209ENST00000528142 DR1Q01658 176 aa21.88■■□□□ 1.09
VPS28-209ENST00000528142 NFX1Q12986 1120 aaKnown RBP21.88■■□□□ 1.09
VPS28-209ENST00000528142 DHX34Q14147 1143 aaKnown RBP21.88■■□□□ 1.09
VPS28-209ENST00000528142 PIGHQ14442 188 aaPredicted RBP21.88■■□□□ 1.09
VPS28-209ENST00000528142 DNAJC5GQ8N7S2 189 aa21.88■■□□□ 1.09
VPS28-209ENST00000528142 C12orf50Q8NA57 414 aaPredicted RBP21.88■■□□□ 1.09
VPS28-209ENST00000528142 RAET1EQ8TD07 263 aa21.88■■□□□ 1.09
VPS28-209ENST00000528142 MAGOHBQ96A72 148 aaKnown RBP21.88■■□□□ 1.09
VPS28-209ENST00000528142 ZNF560Q96MR9 790 aa21.88■■□□□ 1.09
VPS28-209ENST00000528142 PPP1R10Q96QC0 940 aaKnown RBP21.88■■□□□ 1.09
VPS28-209ENST00000528142 OSBPL7Q9BZF2 842 aa21.88■■□□□ 1.09
VPS28-209ENST00000528142 AGO3Q9H9G7 860 aaKnown RBP21.88■■□□□ 1.09
VPS28-209ENST00000528142 GOLGA2P5Q9HBQ8 144 aa21.88■■□□□ 1.09
VPS28-209ENST00000528142 PCYOX1Q9UHG3 505 aa21.88■■□□□ 1.09
VPS28-209ENST00000528142 TSPAN16Q9UKR8 245 aa21.88■■□□□ 1.09
VPS28-209ENST00000528142 SCN1AP35498 2009 aa21.88■■□□□ 1.09
VPS28-209ENST00000528142 BRCA2P51587 3418 aa21.87■■□□□ 1.09
VPS28-209ENST00000528142 FAM187AA6NFU0 413 aa21.87■■□□□ 1.09
VPS28-209ENST00000528142 F8VP50 259 aa21.87■■□□□ 1.09
VPS28-209ENST00000528142 GNRH1P01148 92 aa21.87■■□□□ 1.09
VPS28-209ENST00000528142 FAM153BP0C7A2 387 aa21.87■■□□□ 1.09
VPS28-209ENST00000528142 KRT3P12035 628 aa21.87■■□□□ 1.09
VPS28-209ENST00000528142 RFC1P35251 1148 aaPredicted RBP21.87■■□□□ 1.09
VPS28-209ENST00000528142 FAM153CQ494X1 144 aa21.87■■□□□ 1.09
VPS28-209ENST00000528142 PKDCCQ504Y2 493 aa21.87■■□□□ 1.09
VPS28-209ENST00000528142 LRRC38Q5VT99 294 aa21.87■■□□□ 1.09
VPS28-209ENST00000528142 TTC27Q6P3X3 843 aa21.87■■□□□ 1.09
VPS28-209ENST00000528142 ACOT1Q86TX2 421 aa21.87■■□□□ 1.09
VPS28-209ENST00000528142 PXYLP1Q8TE99 480 aa21.87■■□□□ 1.09
VPS28-209ENST00000528142 KBTBD7Q8WVZ9 684 aa21.87■■□□□ 1.09
VPS28-209ENST00000528142 MCRS1Q96EZ8 462 aa21.87■■□□□ 1.09
VPS28-209ENST00000528142 HERPUD2Q9BSE4 406 aa21.87■■□□□ 1.09
VPS28-209ENST00000528142 WBP1LQ9NX94 342 aa21.87■■□□□ 1.09
VPS28-209ENST00000528142 FAM153AQ9UHL3 310 aa21.87■■□□□ 1.09
VPS28-209ENST00000528142 PTCH2Q9Y6C5 1203 aa21.87■■□□□ 1.09
VPS28-209ENST00000528142 MEIS3P2A8K0S8 358 aa21.87■■□□□ 1.09
VPS28-209ENST00000528142 GOLGA8SH3BPF8 625 aa21.87■■□□□ 1.09
VPS28-209ENST00000528142 GPR182O15218 404 aa21.87■■□□□ 1.09
VPS28-209ENST00000528142 TCF4P15884 667 aa21.87■■□□□ 1.09
VPS28-209ENST00000528142 THPOP40225 353 aa21.87■■□□□ 1.09
VPS28-209ENST00000528142 TAF6P49848 677 aa21.87■■□□□ 1.09
VPS28-209ENST00000528142 PPP1R26Q5T8A7 1209 aaPredicted RBP21.87■■□□□ 1.09
VPS28-209ENST00000528142 DPH6Q7L8W6 267 aa21.87■■□□□ 1.09
VPS28-209ENST00000528142 DDX42Q86XP3 938 aaKnown RBP eCLIP21.87■■□□□ 1.09
VPS28-209ENST00000528142 GSTCDQ8NEC7 633 aa21.87■■□□□ 1.09
VPS28-209ENST00000528142 EXD1Q8NHP7 514 aa21.87■■□□□ 1.09
VPS28-209ENST00000528142 JOSD2Q8TAC2 188 aa21.87■■□□□ 1.09
VPS28-209ENST00000528142 FNIP1Q8TF40 1166 aa21.87■■□□□ 1.09
VPS28-209ENST00000528142 ZFP42Q96MM3 310 aa21.87■■□□□ 1.09
VPS28-209ENST00000528142 ST7Q9NRC1 585 aa21.87■■□□□ 1.09
VPS28-209ENST00000528142 H3BQF6 201 aa21.86■■□□□ 1.09
VPS28-209ENST00000528142 ITGA7Q13683 1181 aa21.86■■□□□ 1.09
VPS28-209ENST00000528142 KCTD19Q17RG1 926 aaPredicted RBP21.86■■□□□ 1.09
VPS28-209ENST00000528142 GOLGA7BQ2TAP0 167 aa21.86■■□□□ 1.09
VPS28-209ENST00000528142 OR6B3Q8NGW1 331 aa21.86■■□□□ 1.09
VPS28-209ENST00000528142 TRIM51Q9BSJ1 452 aa21.86■■□□□ 1.09
VPS28-209ENST00000528142 LRRC19Q9H756 370 aa21.86■■□□□ 1.09
VPS28-209ENST00000528142 SYNCQ9H7C4 482 aa21.86■■□□□ 1.09
VPS28-209ENST00000528142 UTP11Q9Y3A2 253 aaKnown RBP21.86■■□□□ 1.09
VPS28-209ENST00000528142 CABYRO75952 493 aa21.85■■□□□ 1.09
VPS28-209ENST00000528142 FGFR1P11362 822 aa21.85■■□□□ 1.09
VPS28-209ENST00000528142 COILP38432 576 aaPredicted RBP21.85■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms