RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 ANKRD23Q86SG2 305 aa4.56□□□□□ -1.68
CD44-226ENST00000527889 RPAINQ86UA6 219 aa4.56□□□□□ -1.68
CD44-226ENST00000527889 EGFL6Q8IUX8 553 aa4.56□□□□□ -1.68
CD44-226ENST00000527889 AGGF1Q8N302 714 aaeCLIP4.56□□□□□ -1.68
CD44-226ENST00000527889 DEFB123Q8N688 67 aa4.56□□□□□ -1.68
CD44-226ENST00000527889 PAF1Q8N7H5 531 aa4.56□□□□□ -1.68
CD44-226ENST00000527889 FAM133AQ8N9E0 248 aa4.56□□□□□ -1.68
CD44-226ENST00000527889 C12orf50Q8NA57 414 aaPredicted RBP4.56□□□□□ -1.68
CD44-226ENST00000527889 MLKLQ8NB16 471 aa4.56□□□□□ -1.68
CD44-226ENST00000527889 SPC24Q8NBT2 197 aa4.56□□□□□ -1.68
CD44-226ENST00000527889 C1orf131Q8NDD1 294 aaKnown RBP4.56□□□□□ -1.68
CD44-226ENST00000527889 PIGOQ8TEQ8 1089 aa4.56□□□□□ -1.68
CD44-226ENST00000527889 WFDC12Q8WWY7 111 aa4.56□□□□□ -1.68
CD44-226ENST00000527889 COPS5Q92905 334 aa4.56□□□□□ -1.68
CD44-226ENST00000527889 CCDC47Q96A33 483 aaKnown RBP4.56□□□□□ -1.68
CD44-226ENST00000527889 DNAJC19Q96DA6 116 aa4.56□□□□□ -1.68
CD44-226ENST00000527889 FUBP3Q96I24 572 aaKnown RBP eCLIP4.56□□□□□ -1.68
CD44-226ENST00000527889 PDLIM2Q96JY6 352 aa4.56□□□□□ -1.68
CD44-226ENST00000527889 GSDMAQ96QA5 445 aa4.56□□□□□ -1.68
CD44-226ENST00000527889 MED15Q96RN5 788 aa4.56□□□□□ -1.68
CD44-226ENST00000527889 PPP1R9BQ96SB3 815 aa4.56□□□□□ -1.68
CD44-226ENST00000527889 ZFYVE21Q9BQ24 234 aa4.56□□□□□ -1.68
CD44-226ENST00000527889 BPIFA3Q9BQP9 254 aa4.56□□□□□ -1.68
CD44-226ENST00000527889 LXNQ9BS40 222 aa4.56□□□□□ -1.68
CD44-226ENST00000527889 MCMBPQ9BTE3 642 aa4.56□□□□□ -1.68
CD44-226ENST00000527889 POLR3CQ9BUI4 534 aaPredicted RBP4.56□□□□□ -1.68
CD44-226ENST00000527889 SSBP4Q9BWG4 385 aaPredicted RBP4.56□□□□□ -1.68
CD44-226ENST00000527889 TRIM5Q9C035 493 aa4.56□□□□□ -1.68
CD44-226ENST00000527889 RSPH9Q9H1X1 276 aaPredicted RBP4.56□□□□□ -1.68
CD44-226ENST00000527889 HSD3B7Q9H2F3 369 aa4.56□□□□□ -1.68
CD44-226ENST00000527889 POLD4Q9HCU8 107 aa4.56□□□□□ -1.68
CD44-226ENST00000527889 VTA1Q9NP79 307 aa4.56□□□□□ -1.68
CD44-226ENST00000527889 EMC7Q9NPA0 242 aa4.56□□□□□ -1.68
CD44-226ENST00000527889 TPSG1Q9NRR2 321 aa4.56□□□□□ -1.68
CD44-226ENST00000527889 RMND1Q9NWS8 449 aa4.56□□□□□ -1.68
CD44-226ENST00000527889 OBP2AQ9NY56 170 aa4.56□□□□□ -1.68
CD44-226ENST00000527889 TBC1D7Q9P0N9 293 aa4.56□□□□□ -1.68
CD44-226ENST00000527889 WRAP73Q9P2S5 460 aaPredicted RBP4.56□□□□□ -1.68
CD44-226ENST00000527889 IP6K2Q9UHH9 426 aa4.56□□□□□ -1.68
CD44-226ENST00000527889 ABT1Q9ULW3 272 aaKnown RBP4.56□□□□□ -1.68
CD44-226ENST00000527889 LUC7L2Q9Y383 392 aaKnown RBP4.56□□□□□ -1.68
CD44-226ENST00000527889 SF3B6Q9Y3B4 125 aaKnown RBP4.56□□□□□ -1.68
CD44-226ENST00000527889 NPFFR2Q9Y5X5 522 aa4.56□□□□□ -1.68
CD44-226ENST00000527889 ATRXP46100 2492 aa4.56□□□□□ -1.68
CD44-226ENST00000527889 TTC3P53804 2025 aa4.56□□□□□ -1.68
CD44-226ENST00000527889 EYSQ5T1H1 3165 aa4.56□□□□□ -1.68
CD44-226ENST00000527889 SETXQ7Z333 2677 aaKnown RBP4.55□□□□□ -1.68
CD44-226ENST00000527889 ADGRA2Q96PE1 1338 aa4.55□□□□□ -1.68
CD44-226ENST00000527889 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP4.55□□□□□ -1.68
CD44-226ENST00000527889 SMTNL1A8MU46 457 aa4.55□□□□□ -1.68
CD44-226ENST00000527889 VSTM5A8MXK1 200 aa4.55□□□□□ -1.68
CD44-226ENST00000527889 WDR64B1ANS9 1081 aa4.55□□□□□ -1.68
CD44-226ENST00000527889 RSPH10B2B2RC85 870 aa4.55□□□□□ -1.68
CD44-226ENST00000527889 F8W735 103 aaPredicted RBP4.55□□□□□ -1.68
CD44-226ENST00000527889 H0Y8X5 98 aa4.55□□□□□ -1.68
CD44-226ENST00000527889 IKBKBO14920 756 aa4.55□□□□□ -1.68
CD44-226ENST00000527889 SLC26A4O43511 780 aa4.55□□□□□ -1.68
CD44-226ENST00000527889 SLITRK3O94933 977 aa4.55□□□□□ -1.68
CD44-226ENST00000527889 ARIH2O95376 493 aa4.55□□□□□ -1.68
CD44-226ENST00000527889 CCNE2O96020 404 aa4.55□□□□□ -1.68
CD44-226ENST00000527889 THBDP07204 575 aa4.55□□□□□ -1.68
CD44-226ENST00000527889 FURINP09958 794 aa4.55□□□□□ -1.68
CD44-226ENST00000527889 RSPH10BP0C881 870 aa4.55□□□□□ -1.68
CD44-226ENST00000527889 VDRP11473 427 aa4.55□□□□□ -1.68
CD44-226ENST00000527889 KCNA2P16389 499 aa4.55□□□□□ -1.68
CD44-226ENST00000527889 CYP11B2P19099 503 aa4.55□□□□□ -1.68
CD44-226ENST00000527889 PTGS1P23219 599 aa4.55□□□□□ -1.68
CD44-226ENST00000527889 MAN1A1P33908 653 aa4.55□□□□□ -1.68
CD44-226ENST00000527889 GCLCP48506 637 aaPredicted RBP4.55□□□□□ -1.68
CD44-226ENST00000527889 GPR85P60893 370 aa4.55□□□□□ -1.68
CD44-226ENST00000527889 CCNA1P78396 465 aa4.55□□□□□ -1.68
CD44-226ENST00000527889 NRG1Q02297 640 aaPredicted RBP4.55□□□□□ -1.68
CD44-226ENST00000527889 STK4Q13043 487 aa4.55□□□□□ -1.68
CD44-226ENST00000527889 PAK1Q13153 545 aa4.55□□□□□ -1.68
CD44-226ENST00000527889 EPHA7Q15375 998 aa4.55□□□□□ -1.68
CD44-226ENST00000527889 TESK1Q15569 626 aa4.55□□□□□ -1.68
CD44-226ENST00000527889 STXBP2Q15833 593 aa4.55□□□□□ -1.68
CD44-226ENST00000527889 DPY19L1Q2PZI1 675 aa4.55□□□□□ -1.68
CD44-226ENST00000527889 ATP13A4Q4VNC1 1196 aa4.55□□□□□ -1.68
CD44-226ENST00000527889 ACBD5Q5T8D3 534 aaPredicted RBP4.55□□□□□ -1.68
CD44-226ENST00000527889 RGMBQ6NW40 437 aa4.55□□□□□ -1.68
CD44-226ENST00000527889 XRRA1Q6P2D8 792 aa4.55□□□□□ -1.68
CD44-226ENST00000527889 RSPO2Q6UXX9 243 aaPredicted RBP4.55□□□□□ -1.68
CD44-226ENST00000527889 UNC13DQ70J99 1090 aa4.55□□□□□ -1.68
CD44-226ENST00000527889 ZC3HAV1Q7Z2W4 902 aaKnown RBP4.55□□□□□ -1.68
CD44-226ENST00000527889 TMC3Q7Z5M5 1100 aa4.55□□□□□ -1.68
CD44-226ENST00000527889 SAPCD2Q86UD0 394 aa4.55□□□□□ -1.68
CD44-226ENST00000527889 MTDHQ86UE4 582 aaKnown RBP4.55□□□□□ -1.68
CD44-226ENST00000527889 NLRX1Q86UT6 975 aa4.55□□□□□ -1.68
CD44-226ENST00000527889 FBXO16Q8IX29 292 aaPredicted RBP4.55□□□□□ -1.68
CD44-226ENST00000527889 PPIL6Q8IXY8 311 aa4.55□□□□□ -1.68
CD44-226ENST00000527889 ADSSL1Q8N142 457 aa4.55□□□□□ -1.68
CD44-226ENST00000527889 KIAA0895Q8NCT3 520 aa4.55□□□□□ -1.68
CD44-226ENST00000527889 SHCBP1Q8NEM2 672 aa4.55□□□□□ -1.68
CD44-226ENST00000527889 GPRC5AQ8NFJ5 357 aa4.55□□□□□ -1.68
CD44-226ENST00000527889 DNERQ8NFT8 737 aa4.55□□□□□ -1.68
CD44-226ENST00000527889 NPLOC4Q8TAT6 608 aa4.55□□□□□ -1.68
CD44-226ENST00000527889 FRS2Q8WU20 508 aa4.55□□□□□ -1.68
CD44-226ENST00000527889 NELFBQ8WX92 580 aa4.55□□□□□ -1.68
CD44-226ENST00000527889 MEGF10Q96KG7 1140 aa4.55□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms