RNA–Protein interactions for RNA: ENST00000523441.1

SDCBP-211, Transcript of syndecan binding protein, humanhuman

TSL 2

Gene SDCBP, Length 543 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-211ENST00000523441 IFNAR2P48551 515 aa12.6□□□□□ -0.39
SDCBP-211ENST00000523441 TUFMP49411 452 aaKnown RBP12.6□□□□□ -0.39
SDCBP-211ENST00000523441 GNL2Q13823 731 aaKnown RBP12.6□□□□□ -0.39
SDCBP-211ENST00000523441 MYBPC2Q14324 1141 aa12.6□□□□□ -0.39
SDCBP-211ENST00000523441 FRMD1Q8N878 549 aa12.6□□□□□ -0.39
SDCBP-211ENST00000523441 MRPS31Q92665 395 aaKnown RBP12.6□□□□□ -0.39
SDCBP-211ENST00000523441 ACDQ96AP0 544 aa12.6□□□□□ -0.39
SDCBP-211ENST00000523441 DRC1Q96MC2 740 aa12.6□□□□□ -0.39
SDCBP-211ENST00000523441 CYP2S1Q96SQ9 504 aa12.6□□□□□ -0.39
SDCBP-211ENST00000523441 NUSAP1Q9BXS6 441 aaKnown RBP12.6□□□□□ -0.39
SDCBP-211ENST00000523441 OXCT2Q9BYC2 517 aaPredicted RBP12.6□□□□□ -0.39
SDCBP-211ENST00000523441 ECT2Q9H8V3 914 aa12.6□□□□□ -0.39
SDCBP-211ENST00000523441 ZDHHC4Q9NPG8 344 aa12.6□□□□□ -0.39
SDCBP-211ENST00000523441 DUS2Q9NX74 493 aaKnown RBP12.6□□□□□ -0.39
SDCBP-211ENST00000523441 BCCIPQ9P287 314 aaKnown RBP eCLIP12.6□□□□□ -0.39
SDCBP-211ENST00000523441 RBM19Q9Y4C8 960 aaKnown RBP12.6□□□□□ -0.39
SDCBP-211ENST00000523441 NEUROG3Q9Y4Z2 214 aa12.6□□□□□ -0.39
SDCBP-211ENST00000523441 PTPRDP23468 1912 aa12.6□□□□□ -0.39
SDCBP-211ENST00000523441 TNRC6BQ9UPQ9 1833 aaKnown RBP12.6□□□□□ -0.39
SDCBP-211ENST00000523441 TAF4O00268 1085 aa12.59□□□□□ -0.39
SDCBP-211ENST00000523441 TOM1L1O75674 476 aa12.59□□□□□ -0.39
SDCBP-211ENST00000523441 ENGP17813 658 aa12.59□□□□□ -0.39
SDCBP-211ENST00000523441 TYMPP19971 482 aa12.59□□□□□ -0.39
SDCBP-211ENST00000523441 LRPAP1P30533 357 aa12.59□□□□□ -0.39
SDCBP-211ENST00000523441 ATXN3P54252 364 aaPredicted RBP12.59□□□□□ -0.39
SDCBP-211ENST00000523441 NLRP12P59046 1061 aa12.59□□□□□ -0.39
SDCBP-211ENST00000523441 LILRA4P59901 499 aa12.59□□□□□ -0.39
SDCBP-211ENST00000523441 MTF1Q14872 753 aa12.59□□□□□ -0.39
SDCBP-211ENST00000523441 SAFBQ15424 915 aaKnown RBP eCLIP12.59□□□□□ -0.39
SDCBP-211ENST00000523441 ME3Q16798 604 aa12.59□□□□□ -0.39
SDCBP-211ENST00000523441 TTC38Q5R3I4 469 aa12.59□□□□□ -0.39
SDCBP-211ENST00000523441 JADE1Q6IE81 842 aa12.59□□□□□ -0.39
SDCBP-211ENST00000523441 METTL23Q86XA0 190 aa12.59□□□□□ -0.39
SDCBP-211ENST00000523441 PGBD3Q8N328 593 aa12.59□□□□□ -0.39
SDCBP-211ENST00000523441 NSUN7Q8NE18 718 aaKnown RBP12.59□□□□□ -0.39
SDCBP-211ENST00000523441 OR2I1PQ8NGU4 316 aa12.59□□□□□ -0.39
SDCBP-211ENST00000523441 EXOC4Q96A65 974 aa12.59□□□□□ -0.39
SDCBP-211ENST00000523441 ERLEC1Q96DZ1 483 aa12.59□□□□□ -0.39
SDCBP-211ENST00000523441 PYM1Q9BRP8 204 aaKnown RBP12.59□□□□□ -0.39
SDCBP-211ENST00000523441 PI4K2AQ9BTU6 479 aa12.59□□□□□ -0.39
SDCBP-211ENST00000523441 RPF1Q9H9Y2 349 aaKnown RBP12.59□□□□□ -0.39
SDCBP-211ENST00000523441 TMEM74BQ9NUR3 256 aa12.59□□□□□ -0.39
SDCBP-211ENST00000523441 MBD1Q9UIS9 605 aaPredicted RBP12.59□□□□□ -0.39
SDCBP-211ENST00000523441 DNM3Q9UQ16 869 aa12.59□□□□□ -0.39
SDCBP-211ENST00000523441 PI4KAP42356 2102 aa12.59□□□□□ -0.39
SDCBP-211ENST00000523441 NPHP3-ACAD11A0A0J9YXS1 232 aa12.58□□□□□ -0.4
SDCBP-211ENST00000523441 TTC26A0AVF1 554 aa12.58□□□□□ -0.4
SDCBP-211ENST00000523441 CYB561D2O14569 222 aa12.58□□□□□ -0.4
SDCBP-211ENST00000523441 SCAMP3O14828 347 aaKnown RBP12.58□□□□□ -0.4
SDCBP-211ENST00000523441 XPOTO43592 962 aaKnown RBP12.58□□□□□ -0.4
SDCBP-211ENST00000523441 PRPF40AO75400 957 aaKnown RBP12.58□□□□□ -0.4
SDCBP-211ENST00000523441 CKMP06732 381 aa12.58□□□□□ -0.4
SDCBP-211ENST00000523441 CLTAP09496 248 aa12.58□□□□□ -0.4
SDCBP-211ENST00000523441 PTGER3P43115 390 aa12.58□□□□□ -0.4
SDCBP-211ENST00000523441 AARSP49588 968 aaKnown RBP eCLIP12.58□□□□□ -0.4
SDCBP-211ENST00000523441 FAM193AP78312 1265 aa12.58□□□□□ -0.4
SDCBP-211ENST00000523441 MAPK7Q13164 816 aa12.58□□□□□ -0.4
SDCBP-211ENST00000523441 PDGFRLQ15198 375 aa12.58□□□□□ -0.4
SDCBP-211ENST00000523441 COL28A1Q2UY09 1125 aa12.58□□□□□ -0.4
SDCBP-211ENST00000523441 FBXO43Q4G163 708 aa12.58□□□□□ -0.4
SDCBP-211ENST00000523441 RINT1Q6NUQ1 792 aa12.58□□□□□ -0.4
SDCBP-211ENST00000523441 KCNK18Q7Z418 384 aa12.58□□□□□ -0.4
SDCBP-211ENST00000523441 TMEM150AQ86TG1 271 aa12.58□□□□□ -0.4
SDCBP-211ENST00000523441 LRRTM3Q86VH5 581 aa12.58□□□□□ -0.4
SDCBP-211ENST00000523441 THEM5Q8N1Q8 247 aa12.58□□□□□ -0.4
SDCBP-211ENST00000523441 MDGA1Q8NFP4 955 aa12.58□□□□□ -0.4
SDCBP-211ENST00000523441 SLC22A12Q96S37 553 aa12.58□□□□□ -0.4
SDCBP-211ENST00000523441 ZCWPW1Q9H0M4 648 aa12.58□□□□□ -0.4
SDCBP-211ENST00000523441 LINC00597Q9H2U6 94 aa12.58□□□□□ -0.4
SDCBP-211ENST00000523441 EBF1Q9UH73 591 aa12.58□□□□□ -0.4
SDCBP-211ENST00000523441 MSRB2Q9Y3D2 182 aa12.58□□□□□ -0.4
SDCBP-211ENST00000523441 HELZP42694 1942 aaKnown RBP12.58□□□□□ -0.4
SDCBP-211ENST00000523441 CACNA1EQ15878 2313 aa12.57□□□□□ -0.4
SDCBP-211ENST00000523441 F11P03951 625 aa12.57□□□□□ -0.4
SDCBP-211ENST00000523441 NFICP08651 508 aa12.57□□□□□ -0.4
SDCBP-211ENST00000523441 MAPTP10636 758 aaKnown RBP12.57□□□□□ -0.4
SDCBP-211ENST00000523441 HAPLN1P10915 354 aaPredicted RBP12.57□□□□□ -0.4
SDCBP-211ENST00000523441 CYP3A5P20815 502 aa12.57□□□□□ -0.4
SDCBP-211ENST00000523441 WEE1P30291 646 aa12.57□□□□□ -0.4
SDCBP-211ENST00000523441 LIG4P49917 911 aa12.57□□□□□ -0.4
SDCBP-211ENST00000523441 SMTNP53814 917 aa12.57□□□□□ -0.4
SDCBP-211ENST00000523441 MCL1Q07820 350 aa12.57□□□□□ -0.4
SDCBP-211ENST00000523441 LMAN2Q12907 356 aa12.57□□□□□ -0.4
SDCBP-211ENST00000523441 ZBTB6Q15916 424 aa12.57□□□□□ -0.4
SDCBP-211ENST00000523441 ENOX2Q16206 610 aaKnown RBP12.57□□□□□ -0.4
SDCBP-211ENST00000523441 DDR2Q16832 855 aa12.57□□□□□ -0.4
SDCBP-211ENST00000523441 ZC2HC1CQ53FD0 456 aaPredicted RBP12.57□□□□□ -0.4
SDCBP-211ENST00000523441 C9orf57Q5W0N0 161 aa12.57□□□□□ -0.4
SDCBP-211ENST00000523441 WSCD1Q658N2 575 aa12.57□□□□□ -0.4
SDCBP-211ENST00000523441 LPCAT2Q7L5N7 544 aa12.57□□□□□ -0.4
SDCBP-211ENST00000523441 PDZD3Q86UT5 571 aa12.57□□□□□ -0.4
SDCBP-211ENST00000523441 SFTPA1Q8IWL2 248 aa12.57□□□□□ -0.4
SDCBP-211ENST00000523441 EFCAB13Q8IY85 973 aa12.57□□□□□ -0.4
SDCBP-211ENST00000523441 HDDC3Q8N4P3 179 aa12.57□□□□□ -0.4
SDCBP-211ENST00000523441 OSCP1Q8WVF1 389 aa12.57□□□□□ -0.4
SDCBP-211ENST00000523441 HNRNPLLQ8WVV9 542 aaKnown RBP12.57□□□□□ -0.4
SDCBP-211ENST00000523441 HMGB4Q8WW32 186 aa12.57□□□□□ -0.4
SDCBP-211ENST00000523441 GTF3C6Q969F1 213 aa12.57□□□□□ -0.4
SDCBP-211ENST00000523441 COL26A1Q96A83 441 aa12.57□□□□□ -0.4
SDCBP-211ENST00000523441 KIF9Q9HAQ2 790 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms