RNA–Protein interactions for RNA: ENST00000522515.5

LSM1-204, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 1,568 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-204ENST00000522515 SMYD5Q6GMV2 418 aa17.32■□□□□ 0.36
LSM1-204ENST00000522515 SLC8B1Q6J4K2 584 aa17.32■□□□□ 0.36
LSM1-204ENST00000522515 IRF2BP2Q7Z5L9 587 aa17.32■□□□□ 0.36
LSM1-204ENST00000522515 SLC47A2Q86VL8 602 aa17.32■□□□□ 0.36
LSM1-204ENST00000522515 MRPL43Q8N983 215 aaKnown RBP17.32■□□□□ 0.36
LSM1-204ENST00000522515 HEXIM2Q96MH2 286 aaKnown RBP17.32■□□□□ 0.36
LSM1-204ENST00000522515 PKMYT1Q99640 499 aa17.32■□□□□ 0.36
LSM1-204ENST00000522515 OXCT2Q9BYC2 517 aaPredicted RBP17.32■□□□□ 0.36
LSM1-204ENST00000522515 ZCWPW1Q9H0M4 648 aa17.32■□□□□ 0.36
LSM1-204ENST00000522515 LMAN2LQ9H0V9 348 aa17.32■□□□□ 0.36
LSM1-204ENST00000522515 RXFP1Q9HBX9 757 aa17.32■□□□□ 0.36
LSM1-204ENST00000522515 NGRNQ9NPE2 291 aaKnown RBP17.32■□□□□ 0.36
LSM1-204ENST00000522515 AIPL1Q9NZN9 384 aa17.32■□□□□ 0.36
LSM1-204ENST00000522515 IMPACTQ9P2X3 320 aa17.32■□□□□ 0.36
LSM1-204ENST00000522515 TMEM265A0A087WTH1 108 aa17.31■□□□□ 0.36
LSM1-204ENST00000522515 C2orf71A6NGG8 1288 aa17.31■□□□□ 0.36
LSM1-204ENST00000522515 TEX28O15482 410 aa17.31■□□□□ 0.36
LSM1-204ENST00000522515 CNPP09543 421 aaKnown RBP17.31■□□□□ 0.36
LSM1-204ENST00000522515 BMS1Q14692 1282 aaKnown RBP17.31■□□□□ 0.36
LSM1-204ENST00000522515 MDH1BQ5I0G3 518 aa17.31■□□□□ 0.36
LSM1-204ENST00000522515 FAM171BQ6P995 826 aa17.31■□□□□ 0.36
LSM1-204ENST00000522515 CNGA4Q8IV77 575 aa17.31■□□□□ 0.36
LSM1-204ENST00000522515 TC2NQ8N9U0 490 aa17.31■□□□□ 0.36
LSM1-204ENST00000522515 OR8K1Q8NGG5 319 aa17.31■□□□□ 0.36
LSM1-204ENST00000522515 TFAP2BQ92481 460 aa17.31■□□□□ 0.36
LSM1-204ENST00000522515 DNAJC7Q99615 494 aa17.31■□□□□ 0.36
LSM1-204ENST00000522515 ZSWIM1Q9BR11 485 aa17.31■□□□□ 0.36
LSM1-204ENST00000522515 NUCKS1Q9H1E3 243 aaKnown RBP17.31■□□□□ 0.36
LSM1-204ENST00000522515 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP17.31■□□□□ 0.36
LSM1-204ENST00000522515 TMLHEQ9NVH6 421 aa17.31■□□□□ 0.36
LSM1-204ENST00000522515 FNIP2Q9P278 1114 aa17.31■□□□□ 0.36
LSM1-204ENST00000522515 CPB1P15086 417 aa17.3■□□□□ 0.36
LSM1-204ENST00000522515 CD19P15391 556 aa17.3■□□□□ 0.36
LSM1-204ENST00000522515 FERP16591 822 aa17.3■□□□□ 0.36
LSM1-204ENST00000522515 BRD2P25440 801 aaKnown RBP17.3■□□□□ 0.36
LSM1-204ENST00000522515 GNA15P30679 374 aa17.3■□□□□ 0.36
LSM1-204ENST00000522515 ROR1Q01973 937 aa17.3■□□□□ 0.36
LSM1-204ENST00000522515 PTK2Q05397 1052 aa17.3■□□□□ 0.36
LSM1-204ENST00000522515 ARID5BQ14865 1188 aa17.3■□□□□ 0.36
LSM1-204ENST00000522515 ASIC2Q16515 512 aa17.3■□□□□ 0.36
LSM1-204ENST00000522515 SLC39A12Q504Y0 691 aa17.3■□□□□ 0.36
LSM1-204ENST00000522515 MYCBPAPQ8TBZ2 947 aa17.3■□□□□ 0.36
LSM1-204ENST00000522515 SYN2Q92777 582 aaPredicted RBP17.3■□□□□ 0.36
LSM1-204ENST00000522515 ABHD10Q9NUJ1 306 aa17.3■□□□□ 0.36
LSM1-204ENST00000522515 FAM49BQ9NUQ9 324 aa17.3■□□□□ 0.36
LSM1-204ENST00000522515 ATG2AQ2TAZ0 1938 aa17.29■□□□□ 0.36
LSM1-204ENST00000522515 WDR27A2RRH5 827 aa17.29■□□□□ 0.36
LSM1-204ENST00000522515 VDRP11473 427 aa17.29■□□□□ 0.36
LSM1-204ENST00000522515 CCDC130P13994 396 aa17.29■□□□□ 0.36
LSM1-204ENST00000522515 CYP11B1P15538 503 aa17.29■□□□□ 0.36
LSM1-204ENST00000522515 NDUFV1P49821 464 aa17.29■□□□□ 0.36
LSM1-204ENST00000522515 BPIFB4P59827 614 aa17.29■□□□□ 0.36
LSM1-204ENST00000522515 CREMQ03060 361 aa17.29■□□□□ 0.36
LSM1-204ENST00000522515 GPR17Q13304 367 aa17.29■□□□□ 0.36
LSM1-204ENST00000522515 GRIN2CQ14957 1233 aa17.29■□□□□ 0.36
LSM1-204ENST00000522515 SGO2Q562F6 1265 aa17.29■□□□□ 0.36
LSM1-204ENST00000522515 PDE12Q6L8Q7 609 aaKnown RBP17.29■□□□□ 0.36
LSM1-204ENST00000522515 DCP1BQ8IZD4 617 aaKnown RBP17.29■□□□□ 0.36
LSM1-204ENST00000522515 EPS8L1Q8TE68 723 aa17.29■□□□□ 0.36
LSM1-204ENST00000522515 CYFIP2Q96F07 1278 aa17.29■□□□□ 0.36
LSM1-204ENST00000522515 PCED1BQ96HM7 432 aa17.29■□□□□ 0.36
LSM1-204ENST00000522515 PDLIM2Q96JY6 352 aa17.29■□□□□ 0.36
LSM1-204ENST00000522515 KLHL5Q96PQ7 755 aa17.29■□□□□ 0.36
LSM1-204ENST00000522515 DNAI2Q9GZS0 605 aa17.29■□□□□ 0.36
LSM1-204ENST00000522515 PRDM12Q9H4Q4 367 aa17.29■□□□□ 0.36
LSM1-204ENST00000522515 KIAA1257Q9ULG3 409 aa17.29■□□□□ 0.36
LSM1-204ENST00000522515 TRANK1O15050 2925 aa17.29■□□□□ 0.36
LSM1-204ENST00000522515 THAP12O43422 761 aa17.28■□□□□ 0.36
LSM1-204ENST00000522515 SKILP12757 684 aa17.28■□□□□ 0.36
LSM1-204ENST00000522515 HNRNPH3P31942 346 aaKnown RBP17.28■□□□□ 0.36
LSM1-204ENST00000522515 PPP1R26Q5T8A7 1209 aaPredicted RBP17.28■□□□□ 0.36
LSM1-204ENST00000522515 HGSNATQ68CP4 663 aa17.28■□□□□ 0.36
LSM1-204ENST00000522515 WDR59Q6PJI9 974 aa17.28■□□□□ 0.36
LSM1-204ENST00000522515 RNF19BQ6ZMZ0 732 aa17.28■□□□□ 0.36
LSM1-204ENST00000522515 PAQR9Q6ZVX9 377 aa17.28■□□□□ 0.36
LSM1-204ENST00000522515 NOP9Q86U38 636 aaKnown RBP17.28■□□□□ 0.36
LSM1-204ENST00000522515 FUKQ8N0W3 1084 aa17.28■□□□□ 0.36
LSM1-204ENST00000522515 ZNF606Q8WXB4 792 aa17.28■□□□□ 0.36
LSM1-204ENST00000522515 MYLPFQ96A32 169 aa17.28■□□□□ 0.36
LSM1-204ENST00000522515 PGLYRP2Q96PD5 576 aa17.28■□□□□ 0.36
LSM1-204ENST00000522515 B3GNT5Q9BYG0 378 aa17.28■□□□□ 0.36
LSM1-204ENST00000522515 NOCTQ9UK39 431 aaKnown RBP17.28■□□□□ 0.36
LSM1-204ENST00000522515 CLDN5O00501 218 aa17.28■□□□□ 0.36
LSM1-204ENST00000522515 VNN2O95498 520 aa17.28■□□□□ 0.36
LSM1-204ENST00000522515 CCDC172P0C7W6 258 aa17.28■□□□□ 0.36
LSM1-204ENST00000522515 SSTR3P32745 418 aaPredicted RBP17.28■□□□□ 0.36
LSM1-204ENST00000522515 PRKCIP41743 596 aa17.28■□□□□ 0.36
LSM1-204ENST00000522515 PDE6CP51160 858 aa17.28■□□□□ 0.36
LSM1-204ENST00000522515 CYP27A1Q02318 531 aa17.28■□□□□ 0.36
LSM1-204ENST00000522515 RAB33AQ14088 237 aa17.28■□□□□ 0.36
LSM1-204ENST00000522515 MAPRE1Q15691 268 aaKnown RBP17.28■□□□□ 0.36
LSM1-204ENST00000522515 ZNF697Q5TEC3 545 aa17.28■□□□□ 0.36
LSM1-204ENST00000522515 ARHGAP17Q68EM7 881 aa17.28■□□□□ 0.36
LSM1-204ENST00000522515 CCDC186Q7Z3E2 898 aa17.28■□□□□ 0.36
LSM1-204ENST00000522515 ADGRD2Q7Z7M1 963 aa17.28■□□□□ 0.36
LSM1-204ENST00000522515 PALB2Q86YC2 1186 aa17.28■□□□□ 0.36
LSM1-204ENST00000522515 FMNL3Q8IVF7 1028 aa17.28■□□□□ 0.36
LSM1-204ENST00000522515 SLC2A14Q8TDB8 520 aa17.28■□□□□ 0.36
LSM1-204ENST00000522515 SLC20A1Q8WUM9 679 aa17.28■□□□□ 0.36
LSM1-204ENST00000522515 DDX1Q92499 740 aaKnown RBP17.28■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms