RNA–Protein interactions for RNA: ENST00000515516.1

TCOF1-215, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 5

Gene TCOF1, Length 661 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-215ENST00000515516 C1orf228Q6PIY5 440 aa14.66□□□□□ -0.06
TCOF1-215ENST00000515516 GPIHBP1Q8IV16 184 aa14.66□□□□□ -0.06
TCOF1-215ENST00000515516 CXorf38Q8TB03 319 aa14.66□□□□□ -0.06
TCOF1-215ENST00000515516 CCDC127Q96BQ5 260 aa14.66□□□□□ -0.06
TCOF1-215ENST00000515516 MSANTD3Q96H12 275 aa14.66□□□□□ -0.06
TCOF1-215ENST00000515516 FAM84AQ96KN4 292 aa14.66□□□□□ -0.06
TCOF1-215ENST00000515516 MMS19Q96T76 1030 aa14.66□□□□□ -0.06
TCOF1-215ENST00000515516 ABCB6Q9NP58 842 aa14.66□□□□□ -0.06
TCOF1-215ENST00000515516 TMLHEQ9NVH6 421 aa14.66□□□□□ -0.06
TCOF1-215ENST00000515516 THG1LQ9NWX6 298 aaKnown RBP14.66□□□□□ -0.06
TCOF1-215ENST00000515516 OBP2AQ9NY56 170 aa14.66□□□□□ -0.06
TCOF1-215ENST00000515516 UXTQ9UBK9 157 aaPredicted RBP14.66□□□□□ -0.06
TCOF1-215ENST00000515516 GTF3C4Q9UKN8 822 aa14.66□□□□□ -0.06
TCOF1-215ENST00000515516 MAGED2Q9UNF1 606 aaPredicted RBP14.66□□□□□ -0.06
TCOF1-215ENST00000515516 PDCD11Q14690 1871 aaKnown RBP14.65□□□□□ -0.06
TCOF1-215ENST00000515516 EXOC3O60645 756 aa14.65□□□□□ -0.06
TCOF1-215ENST00000515516 PHACTR2O75167 634 aa14.65□□□□□ -0.06
TCOF1-215ENST00000515516 CLSTN1O94985 981 aa14.65□□□□□ -0.06
TCOF1-215ENST00000515516 CMA1P23946 247 aa14.65□□□□□ -0.06
TCOF1-215ENST00000515516 DDX6P26196 483 aaKnown RBP eCLIP14.65□□□□□ -0.06
TCOF1-215ENST00000515516 WEE1P30291 646 aa14.65□□□□□ -0.06
TCOF1-215ENST00000515516 AVPR1AP37288 418 aa14.65□□□□□ -0.06
TCOF1-215ENST00000515516 RPS9P46781 194 aaKnown RBP14.65□□□□□ -0.06
TCOF1-215ENST00000515516 CYP4F8P98187 520 aa14.65□□□□□ -0.06
TCOF1-215ENST00000515516 CSTF1Q05048 431 aaKnown RBP14.65□□□□□ -0.06
TCOF1-215ENST00000515516 CYP24A1Q07973 514 aa14.65□□□□□ -0.06
TCOF1-215ENST00000515516 EHHADHQ08426 723 aa14.65□□□□□ -0.06
TCOF1-215ENST00000515516 PSMD2Q13200 908 aa14.65□□□□□ -0.06
TCOF1-215ENST00000515516 TRPC3Q13507 836 aa14.65□□□□□ -0.06
TCOF1-215ENST00000515516 PSMD6Q15008 389 aa14.65□□□□□ -0.06
TCOF1-215ENST00000515516 MAPRE1Q15691 268 aaKnown RBP14.65□□□□□ -0.06
TCOF1-215ENST00000515516 BMT2Q1RMZ1 405 aa14.65□□□□□ -0.06
TCOF1-215ENST00000515516 SOWAHAQ2M3V2 549 aa14.65□□□□□ -0.06
TCOF1-215ENST00000515516 ARHGAP29Q52LW3 1261 aa14.65□□□□□ -0.06
TCOF1-215ENST00000515516 C4orf50Q6ZRC1 276 aa14.65□□□□□ -0.06
TCOF1-215ENST00000515516 TRAPPC11Q7Z392 1133 aa14.65□□□□□ -0.06
TCOF1-215ENST00000515516 GRAMD1CQ8IYS0 662 aa14.65□□□□□ -0.06
TCOF1-215ENST00000515516 MRPS31Q92665 395 aaKnown RBP14.65□□□□□ -0.06
TCOF1-215ENST00000515516 CCDC47Q96A33 483 aaKnown RBP14.65□□□□□ -0.06
TCOF1-215ENST00000515516 CLDN23Q96B33 292 aa14.65□□□□□ -0.06
TCOF1-215ENST00000515516 PAGE5Q96GU1 130 aa14.65□□□□□ -0.06
TCOF1-215ENST00000515516 CGRRF1Q99675 332 aa14.65□□□□□ -0.06
TCOF1-215ENST00000515516 SNX25Q9H3E2 840 aa14.65□□□□□ -0.06
TCOF1-215ENST00000515516 C8orf33Q9H7E9 229 aaPredicted RBP14.65□□□□□ -0.06
TCOF1-215ENST00000515516 FBXO4Q9UKT5 387 aa14.65□□□□□ -0.06
TCOF1-215ENST00000515516 CDH9Q9ULB4 789 aa14.65□□□□□ -0.06
TCOF1-215ENST00000515516 A0A1B0GVL5 298 aa14.64□□□□□ -0.07
TCOF1-215ENST00000515516 GABRDO14764 452 aa14.64□□□□□ -0.07
TCOF1-215ENST00000515516 LMNAP02545 664 aaKnown RBP14.64□□□□□ -0.07
TCOF1-215ENST00000515516 MYL1P05976 194 aa14.64□□□□□ -0.07
TCOF1-215ENST00000515516 PFKFB1P16118 471 aa14.64□□□□□ -0.07
TCOF1-215ENST00000515516 CYP2F1P24903 491 aa14.64□□□□□ -0.07
TCOF1-215ENST00000515516 MLLT6P55198 1093 aaPredicted RBP14.64□□□□□ -0.07
TCOF1-215ENST00000515516 TNNC1P63316 161 aa14.64□□□□□ -0.07
TCOF1-215ENST00000515516 PLCB2Q00722 1185 aa14.64□□□□□ -0.07
TCOF1-215ENST00000515516 FCHO2Q0JRZ9 810 aa14.64□□□□□ -0.07
TCOF1-215ENST00000515516 PPP2R5DQ14738 602 aa14.64□□□□□ -0.07
TCOF1-215ENST00000515516 DDR2Q16832 855 aa14.64□□□□□ -0.07
TCOF1-215ENST00000515516 OSTM1Q86WC4 334 aa14.64□□□□□ -0.07
TCOF1-215ENST00000515516 SCN4BQ8IWT1 228 aa14.64□□□□□ -0.07
TCOF1-215ENST00000515516 C12orf56Q8IXR9 622 aa14.64□□□□□ -0.07
TCOF1-215ENST00000515516 ADSSL1Q8N142 457 aa14.64□□□□□ -0.07
TCOF1-215ENST00000515516 CELF5Q8N6W0 485 aaKnown RBP14.64□□□□□ -0.07
TCOF1-215ENST00000515516 BPIFB1Q8TDL5 484 aa14.64□□□□□ -0.07
TCOF1-215ENST00000515516 FUBP3Q96I24 572 aaKnown RBP eCLIP14.64□□□□□ -0.07
TCOF1-215ENST00000515516 IL21Q9HBE4 155 aa14.64□□□□□ -0.07
TCOF1-215ENST00000515516 MAGEC2Q9UBF1 373 aaPredicted RBP14.64□□□□□ -0.07
TCOF1-215ENST00000515516 R4GN57 208 aa14.64□□□□□ -0.07
TCOF1-215ENST00000515516 PTPRJQ12913 1337 aa14.64□□□□□ -0.07
TCOF1-215ENST00000515516 SOBPA7XYQ1 873 aa14.63□□□□□ -0.07
TCOF1-215ENST00000515516 ACTN4O43707 911 aaKnown RBP14.63□□□□□ -0.07
TCOF1-215ENST00000515516 PDGFRBP09619 1106 aa14.63□□□□□ -0.07
TCOF1-215ENST00000515516 CCNE1P24864 410 aa14.63□□□□□ -0.07
TCOF1-215ENST00000515516 GNL1P36915 607 aaPredicted RBP14.63□□□□□ -0.07
TCOF1-215ENST00000515516 SYKP43405 635 aa14.63□□□□□ -0.07
TCOF1-215ENST00000515516 GPR15P49685 360 aa14.63□□□□□ -0.07
TCOF1-215ENST00000515516 NLRP12P59046 1061 aa14.63□□□□□ -0.07
TCOF1-215ENST00000515516 ZNF528Q3MIS6 628 aa14.63□□□□□ -0.07
TCOF1-215ENST00000515516 KMT5BQ4FZB7 885 aa14.63□□□□□ -0.07
TCOF1-215ENST00000515516 CFAP221Q4G0U5 840 aa14.63□□□□□ -0.07
TCOF1-215ENST00000515516 SDHAF4Q5VUM1 108 aa14.63□□□□□ -0.07
TCOF1-215ENST00000515516 SCARA3Q6AZY7 606 aa14.63□□□□□ -0.07
TCOF1-215ENST00000515516 CMTM8Q8IZV2 173 aa14.63□□□□□ -0.07
TCOF1-215ENST00000515516 MAB21L3Q8N8X9 362 aa14.63□□□□□ -0.07
TCOF1-215ENST00000515516 ATRIPQ8WXE1 791 aa14.63□□□□□ -0.07
TCOF1-215ENST00000515516 RSPRY1Q96DX4 576 aa14.63□□□□□ -0.07
TCOF1-215ENST00000515516 SYT15Q9BQS2 421 aa14.63□□□□□ -0.07
TCOF1-215ENST00000515516 IER2Q9BTL4 223 aa14.63□□□□□ -0.07
TCOF1-215ENST00000515516 MKNK1Q9BUB5 465 aa14.63□□□□□ -0.07
TCOF1-215ENST00000515516 SLC46A2Q9BY10 475 aa14.63□□□□□ -0.07
TCOF1-215ENST00000515516 SCAND2PQ9GZW5 306 aaPredicted RBP14.63□□□□□ -0.07
TCOF1-215ENST00000515516 LMAN1LQ9HAT1 526 aa14.63□□□□□ -0.07
TCOF1-215ENST00000515516 NOTCH4Q99466 2003 aa14.63□□□□□ -0.07
TCOF1-215ENST00000515516 MYBPHLA2RUH7 354 aa14.62□□□□□ -0.07
TCOF1-215ENST00000515516 SLC38A8A6NNN8 435 aa14.62□□□□□ -0.07
TCOF1-215ENST00000515516 KINO60870 393 aaKnown RBP14.62□□□□□ -0.07
TCOF1-215ENST00000515516 KIF20AO95235 890 aa14.62□□□□□ -0.07
TCOF1-215ENST00000515516 CST3P01034 146 aaPredicted RBP14.62□□□□□ -0.07
TCOF1-215ENST00000515516 F11P03951 625 aa14.62□□□□□ -0.07
TCOF1-215ENST00000515516 FAM163BP0C2L3 166 aa14.62□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms