RNA–Protein interactions for RNA: ENST00000509552.5

CCHCR1-228, Transcript of coiled-coil alpha-helical rod protein 1, humanhuman

TSL 1 (best)

Gene CCHCR1, Length 2,304 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCHCR1-228ENST00000509552 ELF3P78545 371 aaPredicted RBP18.88■□□□□ 0.61
CCHCR1-228ENST00000509552 TFDP1Q14186 410 aa18.88■□□□□ 0.61
CCHCR1-228ENST00000509552 TMEM63BQ5T3F8 832 aa18.88■□□□□ 0.61
CCHCR1-228ENST00000509552 ATF7IP2Q5U623 682 aa18.88■□□□□ 0.61
CCHCR1-228ENST00000509552 DENND1BQ6P3S1 775 aa18.88■□□□□ 0.61
CCHCR1-228ENST00000509552 POTEAQ6S8J7 498 aa18.88■□□□□ 0.61
CCHCR1-228ENST00000509552 TRABD2AQ86V40 505 aa18.88■□□□□ 0.61
CCHCR1-228ENST00000509552 ZBED8Q8IZ13 594 aa18.88■□□□□ 0.61
CCHCR1-228ENST00000509552 TTC13Q8NBP0 860 aa18.88■□□□□ 0.61
CCHCR1-228ENST00000509552 XYLT2Q9H1B5 865 aa18.88■□□□□ 0.61
CCHCR1-228ENST00000509552 LHX5Q9H2C1 402 aa18.88■□□□□ 0.61
CCHCR1-228ENST00000509552 SENP1Q9P0U3 644 aa18.88■□□□□ 0.61
CCHCR1-228ENST00000509552 KLHL14Q9P2G3 628 aa18.88■□□□□ 0.61
CCHCR1-228ENST00000509552 SNCAIPQ9Y6H5 919 aa18.88■□□□□ 0.61
CCHCR1-228ENST00000509552 BRCA1P38398 1863 aaKnown RBP18.88■□□□□ 0.61
CCHCR1-228ENST00000509552 ACKR2O00590 384 aa18.88■□□□□ 0.61
CCHCR1-228ENST00000509552 KRT15P19012 456 aa18.88■□□□□ 0.61
CCHCR1-228ENST00000509552 RFC1P35251 1148 aaPredicted RBP18.88■□□□□ 0.61
CCHCR1-228ENST00000509552 OSTNP61366 133 aa18.88■□□□□ 0.61
CCHCR1-228ENST00000509552 VGLL4Q14135 290 aa18.88■□□□□ 0.61
CCHCR1-228ENST00000509552 WDR72Q3MJ13 1102 aa18.88■□□□□ 0.61
CCHCR1-228ENST00000509552 GPR20Q99678 358 aa18.88■□□□□ 0.61
CCHCR1-228ENST00000509552 PAIP2Q9BPZ3 127 aaKnown RBP18.88■□□□□ 0.61
CCHCR1-228ENST00000509552 ZWILCHQ9H900 591 aa18.88■□□□□ 0.61
CCHCR1-228ENST00000509552 GPRC5DQ9NZD1 345 aa18.88■□□□□ 0.61
CCHCR1-228ENST00000509552 IGKV6-21A0A0C4DH24 114 aa18.87■□□□□ 0.61
CCHCR1-228ENST00000509552 INO80B-WBP1J3KQ70 363 aa18.87■□□□□ 0.61
CCHCR1-228ENST00000509552 KRT19P08727 400 aa18.87■□□□□ 0.61
CCHCR1-228ENST00000509552 PROZP22891 400 aa18.87■□□□□ 0.61
CCHCR1-228ENST00000509552 GCAP28676 217 aa18.87■□□□□ 0.61
CCHCR1-228ENST00000509552 FASTKD3Q14CZ7 662 aaKnown RBP18.87■□□□□ 0.61
CCHCR1-228ENST00000509552 MTFR1Q15390 333 aa18.87■□□□□ 0.61
CCHCR1-228ENST00000509552 PTPN20Q4JDL3 420 aa18.87■□□□□ 0.61
CCHCR1-228ENST00000509552 HP1BP3Q5SSJ5 553 aaPredicted RBP18.87■□□□□ 0.61
CCHCR1-228ENST00000509552 PLPPR4Q7Z2D5 763 aa18.87■□□□□ 0.61
CCHCR1-228ENST00000509552 SLC35B2Q8TB61 432 aa18.87■□□□□ 0.61
CCHCR1-228ENST00000509552 SMC6Q96SB8 1091 aa18.87■□□□□ 0.61
CCHCR1-228ENST00000509552 PITPNM3Q9BZ71 974 aa18.87■□□□□ 0.61
CCHCR1-228ENST00000509552 INO80BQ9C086 356 aaPredicted RBP18.87■□□□□ 0.61
CCHCR1-228ENST00000509552 SYNCQ9H7C4 482 aa18.87■□□□□ 0.61
CCHCR1-228ENST00000509552 WDR35Q9P2L0 1181 aa18.87■□□□□ 0.61
CCHCR1-228ENST00000509552 GGT7Q9UJ14 662 aa18.87■□□□□ 0.61
CCHCR1-228ENST00000509552 WDR90Q96KV7 1748 aa18.87■□□□□ 0.61
CCHCR1-228ENST00000509552 LGR5O75473 907 aa18.86■□□□□ 0.61
CCHCR1-228ENST00000509552 PSMC1P62191 440 aaKnown RBP18.86■□□□□ 0.61
CCHCR1-228ENST00000509552 DYNLT1P63172 113 aa18.86■□□□□ 0.61
CCHCR1-228ENST00000509552 PDIA2Q13087 525 aaKnown RBP18.86■□□□□ 0.61
CCHCR1-228ENST00000509552 ZNF667Q5HYK9 610 aa18.86■□□□□ 0.61
CCHCR1-228ENST00000509552 GADL1Q6ZQY3 521 aa18.86■□□□□ 0.61
CCHCR1-228ENST00000509552 TRIM50Q86XT4 487 aa18.86■□□□□ 0.61
CCHCR1-228ENST00000509552 MAGEC3Q8TD91 643 aa18.86■□□□□ 0.61
CCHCR1-228ENST00000509552 FNIP1Q8TF40 1166 aa18.86■□□□□ 0.61
CCHCR1-228ENST00000509552 NLRP4Q96MN2 994 aa18.86■□□□□ 0.61
CCHCR1-228ENST00000509552 TRABDQ9H4I3 376 aa18.86■□□□□ 0.61
CCHCR1-228ENST00000509552 PRKAG3Q9UGI9 489 aa18.86■□□□□ 0.61
CCHCR1-228ENST00000509552 SMG5Q9UPR3 1016 aaKnown RBP18.86■□□□□ 0.61
CCHCR1-228ENST00000509552 PRPF4O43172 522 aaKnown RBP eCLIP18.86■□□□□ 0.611e-8■■□□□ 11.6
CCHCR1-228ENST00000509552 IL18RAPO95256 599 aa18.86■□□□□ 0.61
CCHCR1-228ENST00000509552 TAC1P20366 129 aa18.86■□□□□ 0.61
CCHCR1-228ENST00000509552 IRX3P78415 501 aaPredicted RBP18.86■□□□□ 0.61
CCHCR1-228ENST00000509552 SLC25A11Q02978 314 aaKnown RBP18.86■□□□□ 0.61
CCHCR1-228ENST00000509552 HIF1AQ16665 826 aa18.86■□□□□ 0.61
CCHCR1-228ENST00000509552 CCDC142Q17RM4 750 aa18.86■□□□□ 0.61
CCHCR1-228ENST00000509552 HSDL1Q3SXM5 330 aa18.86■□□□□ 0.61
CCHCR1-228ENST00000509552 GALNTL6Q49A17 601 aa18.86■□□□□ 0.61
CCHCR1-228ENST00000509552 CCDC91Q7Z6B0 441 aa18.86■□□□□ 0.61
CCHCR1-228ENST00000509552 TBC1D1Q86TI0 1168 aaPredicted RBP18.86■□□□□ 0.61
CCHCR1-228ENST00000509552 PRCCQ92733 491 aaPredicted RBP18.86■□□□□ 0.61
CCHCR1-228ENST00000509552 ECT2Q9H8V3 914 aa18.86■□□□□ 0.61
CCHCR1-228ENST00000509552 RPF1Q9H9Y2 349 aaKnown RBP18.86■□□□□ 0.61
CCHCR1-228ENST00000509552 RXFP1Q9HBX9 757 aa18.86■□□□□ 0.61
CCHCR1-228ENST00000509552 PTPRHQ9HD43 1115 aa18.86■□□□□ 0.61
CCHCR1-228ENST00000509552 SLC24A2Q9UI40 661 aa18.86■□□□□ 0.61
CCHCR1-228ENST00000509552 POLIQ9UNA4 740 aa18.86■□□□□ 0.61
CCHCR1-228ENST00000509552 C3orf70A6NLC5 250 aaPredicted RBP18.85■□□□□ 0.61
CCHCR1-228ENST00000509552 ZBTB42B2RXF5 422 aa18.85■□□□□ 0.61
CCHCR1-228ENST00000509552 SPAG7O75391 227 aa18.85■□□□□ 0.61
CCHCR1-228ENST00000509552 LRCH4O75427 683 aa18.85■□□□□ 0.61
CCHCR1-228ENST00000509552 SLC18A1P54219 525 aa18.85■□□□□ 0.61
CCHCR1-228ENST00000509552 OTUD4Q01804 1114 aaKnown RBP18.85■□□□□ 0.61
CCHCR1-228ENST00000509552 SPARCL1Q14515 664 aa18.85■□□□□ 0.61
CCHCR1-228ENST00000509552 SMTNL2Q2TAL5 461 aa18.85■□□□□ 0.61
CCHCR1-228ENST00000509552 CELF3Q5SZQ8 465 aaKnown RBP18.85■□□□□ 0.61
CCHCR1-228ENST00000509552 CAPN12Q6ZSI9 719 aa18.85■□□□□ 0.61
CCHCR1-228ENST00000509552 PPIL6Q8IXY8 311 aa18.85■□□□□ 0.61
CCHCR1-228ENST00000509552 ACTL9Q8TC94 416 aa18.85■□□□□ 0.61
CCHCR1-228ENST00000509552 FZD8Q9H461 694 aa18.85■□□□□ 0.61
CCHCR1-228ENST00000509552 AGAP1Q9UPQ3 857 aa18.85■□□□□ 0.61
CCHCR1-228ENST00000509552 CSADQ9Y600 493 aa18.85■□□□□ 0.61
CCHCR1-228ENST00000509552 CST8O60676 142 aa18.85■□□□□ 0.61
CCHCR1-228ENST00000509552 ARIH2O95376 493 aa18.85■□□□□ 0.61
CCHCR1-228ENST00000509552 SLC8A1P32418 973 aa18.85■□□□□ 0.61
CCHCR1-228ENST00000509552 PHBP35232 272 aa18.85■□□□□ 0.61
CCHCR1-228ENST00000509552 BBS12Q6ZW61 710 aa18.85■□□□□ 0.61
CCHCR1-228ENST00000509552 JOSD2Q8TAC2 188 aa18.85■□□□□ 0.61
CCHCR1-228ENST00000509552 RSAD2Q8WXG1 361 aa18.85■□□□□ 0.61
CCHCR1-228ENST00000509552 PSMC3IPQ9P2W1 217 aaPredicted RBP18.85■□□□□ 0.61
CCHCR1-228ENST00000509552 RGS17Q9UGC6 210 aaPredicted RBP18.85■□□□□ 0.61
CCHCR1-228ENST00000509552 ASMTLO95671 621 aa18.84■□□□□ 0.61
CCHCR1-228ENST00000509552 KDELR1P24390 212 aa18.84■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms