RNA–Protein interactions for RNA: ENST00000507401.2

SCN1A-207, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 3

Gene SCN1A, Length 711 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-207ENST00000507401 POLIQ9UNA4 740 aa8.65□□□□□ -1.02
SCN1A-207ENST00000507401 PIEZO1Q92508 2521 aa8.65□□□□□ -1.02
SCN1A-207ENST00000507401 DOCK6Q96HP0 2047 aa8.64□□□□□ -1.03
SCN1A-207ENST00000507401 A0A087X0B3 334 aa8.64□□□□□ -1.03
SCN1A-207ENST00000507401 SEC24AO95486 1093 aa8.64□□□□□ -1.03
SCN1A-207ENST00000507401 PDGFBP01127 241 aaPredicted RBP8.64□□□□□ -1.03
SCN1A-207ENST00000507401 CYP11A1P05108 521 aa8.64□□□□□ -1.03
SCN1A-207ENST00000507401 IDEP14735 1019 aa8.64□□□□□ -1.03
SCN1A-207ENST00000507401 NPR3P17342 541 aa8.64□□□□□ -1.03
SCN1A-207ENST00000507401 AOC1P19801 751 aa8.64□□□□□ -1.03
SCN1A-207ENST00000507401 VCPP55072 806 aaKnown RBP8.64□□□□□ -1.03
SCN1A-207ENST00000507401 ARPP19P56211 112 aa8.64□□□□□ -1.03
SCN1A-207ENST00000507401 NTHL1P78549 312 aa8.64□□□□□ -1.03
SCN1A-207ENST00000507401 SMARCB1Q12824 385 aa8.64□□□□□ -1.03
SCN1A-207ENST00000507401 TCF15Q12870 199 aa8.64□□□□□ -1.03
SCN1A-207ENST00000507401 MYBPC2Q14324 1141 aa8.64□□□□□ -1.03
SCN1A-207ENST00000507401 TPD52L1Q16890 204 aaPredicted RBP8.64□□□□□ -1.03
SCN1A-207ENST00000507401 LCE2AQ5TA79 106 aaPredicted RBP8.64□□□□□ -1.03
SCN1A-207ENST00000507401 CYP4A22Q5TCH4 519 aa8.64□□□□□ -1.03
SCN1A-207ENST00000507401 C9orf57Q5W0N0 161 aa8.64□□□□□ -1.03
SCN1A-207ENST00000507401 OVOS1Q6IE37 1185 aa8.64□□□□□ -1.03
SCN1A-207ENST00000507401 IQCEQ6IPM2 695 aa8.64□□□□□ -1.03
SCN1A-207ENST00000507401 PHLDB3Q6NSJ2 640 aa8.64□□□□□ -1.03
SCN1A-207ENST00000507401 STXBP4Q6ZWJ1 553 aa8.64□□□□□ -1.03
SCN1A-207ENST00000507401 GET4Q7L5D6 327 aaPredicted RBP8.64□□□□□ -1.03
SCN1A-207ENST00000507401 PRSS33Q8NF86 280 aa8.64□□□□□ -1.03
SCN1A-207ENST00000507401 KCNG4Q8TDN1 519 aa8.64□□□□□ -1.03
SCN1A-207ENST00000507401 CACTINQ8WUQ7 758 aaKnown RBP8.64□□□□□ -1.03
SCN1A-207ENST00000507401 RSAD2Q8WXG1 361 aa8.64□□□□□ -1.03
SCN1A-207ENST00000507401 ZNF512Q96ME7 567 aaPredicted RBP8.64□□□□□ -1.03
SCN1A-207ENST00000507401 C7orf25Q9BPX7 421 aa8.64□□□□□ -1.03
SCN1A-207ENST00000507401 PYM1Q9BRP8 204 aaKnown RBP8.64□□□□□ -1.03
SCN1A-207ENST00000507401 SCAND2PQ9GZW5 306 aaPredicted RBP8.64□□□□□ -1.03
SCN1A-207ENST00000507401 MAGEF1Q9HAY2 307 aa8.64□□□□□ -1.03
SCN1A-207ENST00000507401 DPP3Q9NY33 737 aa8.64□□□□□ -1.03
SCN1A-207ENST00000507401 IMPACTQ9P2X3 320 aa8.64□□□□□ -1.03
SCN1A-207ENST00000507401 RCOR1Q9UKL0 485 aa8.64□□□□□ -1.03
SCN1A-207ENST00000507401 FBXL21Q9UKT6 434 aa8.64□□□□□ -1.03
SCN1A-207ENST00000507401 MRPS23Q9Y3D9 190 aaKnown RBP8.64□□□□□ -1.03
SCN1A-207ENST00000507401 NUMBLQ9Y6R0 609 aa8.64□□□□□ -1.03
SCN1A-207ENST00000507401 NOTCH4Q99466 2003 aa8.64□□□□□ -1.03
SCN1A-207ENST00000507401 KMT2EQ8IZD2 1858 aa8.64□□□□□ -1.03
SCN1A-207ENST00000507401 NARSO43776 548 aaKnown RBP8.63□□□□□ -1.03
SCN1A-207ENST00000507401 ECI2O75521 394 aa8.63□□□□□ -1.03
SCN1A-207ENST00000507401 GCNT3O95395 438 aa8.63□□□□□ -1.03
SCN1A-207ENST00000507401 F13A1P00488 732 aa8.63□□□□□ -1.03
SCN1A-207ENST00000507401 TUBBP07437 444 aa8.63□□□□□ -1.03
SCN1A-207ENST00000507401 RHOP08100 348 aa8.63□□□□□ -1.03
SCN1A-207ENST00000507401 NFICP08651 508 aa8.63□□□□□ -1.03
SCN1A-207ENST00000507401 ODC1P11926 461 aa8.63□□□□□ -1.03
SCN1A-207ENST00000507401 H2AFXP16104 143 aaPredicted RBP8.63□□□□□ -1.03
SCN1A-207ENST00000507401 PNPLA4P41247 253 aa8.63□□□□□ -1.03
SCN1A-207ENST00000507401 EPHA5P54756 1037 aa8.63□□□□□ -1.03
SCN1A-207ENST00000507401 SNRPFP62306 86 aaKnown RBP8.63□□□□□ -1.03
SCN1A-207ENST00000507401 ADCY1Q08828 1119 aa8.63□□□□□ -1.03
SCN1A-207ENST00000507401 KCNA1Q09470 495 aa8.63□□□□□ -1.03
SCN1A-207ENST00000507401 PLD1Q13393 1074 aa8.63□□□□□ -1.03
SCN1A-207ENST00000507401 PKP1Q13835 747 aa8.63□□□□□ -1.03
SCN1A-207ENST00000507401 CENPPQ6IPU0 288 aa8.63□□□□□ -1.03
SCN1A-207ENST00000507401 ARMCX5Q6P1M9 558 aa8.63□□□□□ -1.03
SCN1A-207ENST00000507401 SHC4Q6S5L8 630 aa8.63□□□□□ -1.03
SCN1A-207ENST00000507401 PARM1Q6UWI2 310 aa8.63□□□□□ -1.03
SCN1A-207ENST00000507401 RBM43Q6ZSC3 357 aaKnown RBP8.63□□□□□ -1.03
SCN1A-207ENST00000507401 METTL23Q86XA0 190 aa8.63□□□□□ -1.03
SCN1A-207ENST00000507401 NPAS3Q8IXF0 933 aa8.63□□□□□ -1.03
SCN1A-207ENST00000507401 SYCP3Q8IZU3 236 aa8.63□□□□□ -1.03
SCN1A-207ENST00000507401 SIX5Q8N196 739 aa8.63□□□□□ -1.03
SCN1A-207ENST00000507401 ELMOD1Q8N336 334 aa8.63□□□□□ -1.03
SCN1A-207ENST00000507401 PDILTQ8N807 584 aa8.63□□□□□ -1.03
SCN1A-207ENST00000507401 TMEM105Q8N8V8 129 aa8.63□□□□□ -1.03
SCN1A-207ENST00000507401 ITFG1Q8TB96 612 aa8.63□□□□□ -1.03
SCN1A-207ENST00000507401 C2orf15Q8WU43 125 aaKnown RBP8.63□□□□□ -1.03
SCN1A-207ENST00000507401 FGF14Q92915 247 aa8.63□□□□□ -1.03
SCN1A-207ENST00000507401 BORCS6Q96GS4 357 aa8.63□□□□□ -1.03
SCN1A-207ENST00000507401 SHDQ96IW2 340 aa8.63□□□□□ -1.03
SCN1A-207ENST00000507401 SENP8Q96LD8 212 aa8.63□□□□□ -1.03
SCN1A-207ENST00000507401 ZNF830Q96NB3 372 aaPredicted RBP8.63□□□□□ -1.03
SCN1A-207ENST00000507401 CDK15Q96Q40 435 aa8.63□□□□□ -1.03
SCN1A-207ENST00000507401 ARID3AQ99856 593 aa8.63□□□□□ -1.03
SCN1A-207ENST00000507401 RPP25Q9BUL9 199 aaKnown RBP8.63□□□□□ -1.03
SCN1A-207ENST00000507401 TRIM9Q9C026 710 aa8.63□□□□□ -1.03
SCN1A-207ENST00000507401 GPR88Q9GZN0 384 aa8.63□□□□□ -1.03
SCN1A-207ENST00000507401 KCNF1Q9H3M0 494 aa8.63□□□□□ -1.03
SCN1A-207ENST00000507401 L2HGDHQ9H9P8 463 aa8.63□□□□□ -1.03
SCN1A-207ENST00000507401 KIAA1586Q9HCI6 787 aa8.63□□□□□ -1.03
SCN1A-207ENST00000507401 HCFC1R1Q9NWW0 138 aa8.63□□□□□ -1.03
SCN1A-207ENST00000507401 TBC1D7Q9P0N9 293 aa8.63□□□□□ -1.03
SCN1A-207ENST00000507401 FEZ2Q9UHY8 353 aaPredicted RBP8.63□□□□□ -1.03
SCN1A-207ENST00000507401 ASB3Q9Y575 518 aa8.63□□□□□ -1.03
SCN1A-207ENST00000507401 INSL5Q9Y5Q6 135 aa8.63□□□□□ -1.03
SCN1A-207ENST00000507401 MYH15Q9Y2K3 1946 aa8.62□□□□□ -1.03
SCN1A-207ENST00000507401 ANK1P16157 1881 aa8.62□□□□□ -1.03
SCN1A-207ENST00000507401 KRBA1A5PL33 1030 aa8.62□□□□□ -1.03
SCN1A-207ENST00000507401 KPNA7A9QM74 516 aa8.62□□□□□ -1.03
SCN1A-207ENST00000507401 TISP43B9A030 160 aa8.62□□□□□ -1.03
SCN1A-207ENST00000507401 CYB561D2O14569 222 aa8.62□□□□□ -1.03
SCN1A-207ENST00000507401 EIF3DO15371 548 aaKnown RBP eCLIP8.62□□□□□ -1.03
SCN1A-207ENST00000507401 EXTL3O43909 919 aa8.62□□□□□ -1.03
SCN1A-207ENST00000507401 CPB1P15086 417 aa8.62□□□□□ -1.03
SCN1A-207ENST00000507401 TUFMP49411 452 aaKnown RBP8.62□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms