RNA–Protein interactions for RNA: ENST00000506042.5

SQSTM1-210, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 921 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-210ENST00000506042 ADRB1P08588 477 aa22.63■■□□□ 1.21
SQSTM1-210ENST00000506042 LHX1P48742 406 aa22.63■■□□□ 1.21
SQSTM1-210ENST00000506042 NLRP12P59046 1061 aa22.63■■□□□ 1.21
SQSTM1-210ENST00000506042 MYO1EQ12965 1108 aa22.63■■□□□ 1.21
SQSTM1-210ENST00000506042 GAS6Q14393 721 aa22.63■■□□□ 1.21
SQSTM1-210ENST00000506042 SF3A1Q15459 793 aaKnown RBP22.63■■□□□ 1.21
SQSTM1-210ENST00000506042 ZC2HC1CQ53FD0 456 aaPredicted RBP22.63■■□□□ 1.21
SQSTM1-210ENST00000506042 RRAGBQ5VZM2 374 aa22.63■■□□□ 1.21
SQSTM1-210ENST00000506042 SLC39A4Q6P5W5 647 aa22.63■■□□□ 1.21
SQSTM1-210ENST00000506042 TXNDC11Q6PKC3 985 aa22.63■■□□□ 1.21
SQSTM1-210ENST00000506042 ZNF720Q7Z2F6 126 aa22.63■■□□□ 1.21
SQSTM1-210ENST00000506042 FAM160A2Q8N612 972 aaPredicted RBP22.63■■□□□ 1.21
SQSTM1-210ENST00000506042 LRRC52Q8N7C0 313 aa22.63■■□□□ 1.21
SQSTM1-210ENST00000506042 CHAMP1Q96JM3 812 aa22.63■■□□□ 1.21
SQSTM1-210ENST00000506042 ACBD6Q9BR61 282 aa22.63■■□□□ 1.21
SQSTM1-210ENST00000506042 SLC46A2Q9BY10 475 aa22.63■■□□□ 1.21
SQSTM1-210ENST00000506042 TMEM206Q9H813 350 aa22.63■■□□□ 1.21
SQSTM1-210ENST00000506042 ITGA11Q9UKX5 1188 aa22.63■■□□□ 1.21
SQSTM1-210ENST00000506042 PCDHGA5Q9Y5G8 931 aa22.63■■□□□ 1.21
SQSTM1-210ENST00000506042 DMXL1Q9Y485 3027 aa22.63■■□□□ 1.21
SQSTM1-210ENST00000506042 ANKRD63C9JTQ0 380 aa22.62■■□□□ 1.21
SQSTM1-210ENST00000506042 USP17L7P0C7H9 530 aa22.62■■□□□ 1.21
SQSTM1-210ENST00000506042 TMEM191BP0C7N4 346 aa22.62■■□□□ 1.21
SQSTM1-210ENST00000506042 MAPRE1Q15691 268 aaKnown RBP22.62■■□□□ 1.21
SQSTM1-210ENST00000506042 ELF2Q15723 593 aa22.62■■□□□ 1.21
SQSTM1-210ENST00000506042 TMEM196Q5HYL7 178 aa22.62■■□□□ 1.21
SQSTM1-210ENST00000506042 C4orf50Q6ZRC1 276 aa22.62■■□□□ 1.21
SQSTM1-210ENST00000506042 C11orf74Q86VG3 221 aa22.62■■□□□ 1.21
SQSTM1-210ENST00000506042 MON1AQ86VX9 555 aa22.62■■□□□ 1.21
SQSTM1-210ENST00000506042 SFR1Q86XK3 245 aa22.62■■□□□ 1.21
SQSTM1-210ENST00000506042 SPATA2LQ8IUW3 424 aaPredicted RBP22.62■■□□□ 1.21
SQSTM1-210ENST00000506042 ATP2A3Q93084 1043 aa22.62■■□□□ 1.21
SQSTM1-210ENST00000506042 IL21Q9HBE4 155 aa22.62■■□□□ 1.21
SQSTM1-210ENST00000506042 RBAKQ9NYW8 714 aaPredicted RBP22.62■■□□□ 1.21
SQSTM1-210ENST00000506042 ZNF638Q14966 1978 aaKnown RBP22.61■■□□□ 1.21
SQSTM1-210ENST00000506042 CEP250Q9BV73 2442 aa22.61■■□□□ 1.21
SQSTM1-210ENST00000506042 TRAV19A0A0A6YYK7 116 aa22.61■■□□□ 1.21
SQSTM1-210ENST00000506042 TRDMT1O14717 391 aaKnown RBP22.61■■□□□ 1.21
SQSTM1-210ENST00000506042 GCNT3O95395 438 aa22.61■■□□□ 1.21
SQSTM1-210ENST00000506042 CKMP06732 381 aa22.61■■□□□ 1.21
SQSTM1-210ENST00000506042 GARTP22102 1010 aa22.61■■□□□ 1.21
SQSTM1-210ENST00000506042 KCNA4P22459 653 aa22.61■■□□□ 1.21
SQSTM1-210ENST00000506042 IFNAR2P48551 515 aa22.61■■□□□ 1.21
SQSTM1-210ENST00000506042 LIMK1P53667 647 aa22.61■■□□□ 1.21
SQSTM1-210ENST00000506042 TNK2Q07912 1038 aa22.61■■□□□ 1.21
SQSTM1-210ENST00000506042 SURF1Q15526 300 aa22.61■■□□□ 1.21
SQSTM1-210ENST00000506042 CCDC73Q6ZRK6 1079 aa22.61■■□□□ 1.21
SQSTM1-210ENST00000506042 DYMQ7RTS9 669 aa22.61■■□□□ 1.21
SQSTM1-210ENST00000506042 TRMT2BQ96GJ1 504 aaKnown RBP22.61■■□□□ 1.21
SQSTM1-210ENST00000506042 FUBP3Q96I24 572 aaKnown RBP eCLIP22.61■■□□□ 1.21
SQSTM1-210ENST00000506042 ANKRD36BP1Q96IX9 119 aa22.61■■□□□ 1.21
SQSTM1-210ENST00000506042 CNTNAP3BQ96NU0 1288 aa22.61■■□□□ 1.21
SQSTM1-210ENST00000506042 P2RY13Q9BPV8 354 aa22.61■■□□□ 1.21
SQSTM1-210ENST00000506042 FAM83CQ9BQN1 747 aa22.61■■□□□ 1.21
SQSTM1-210ENST00000506042 FAM213AQ9BRX8 229 aa22.61■■□□□ 1.21
SQSTM1-210ENST00000506042 CNTNAP3Q9BZ76 1288 aa22.61■■□□□ 1.21
SQSTM1-210ENST00000506042 LRRC27Q9C0I9 530 aa22.61■■□□□ 1.21
SQSTM1-210ENST00000506042 DDX43Q9NXZ2 648 aaKnown RBP22.61■■□□□ 1.21
SQSTM1-210ENST00000506042 AGAP1Q9UPQ3 857 aa22.61■■□□□ 1.21
SQSTM1-210ENST00000506042 ANK1P16157 1881 aa22.6■■□□□ 1.21
SQSTM1-210ENST00000506042 VPS37CA5D8V6 355 aaPredicted RBP22.6■■□□□ 1.21
SQSTM1-210ENST00000506042 ITGB3P05106 788 aa22.6■■□□□ 1.21
SQSTM1-210ENST00000506042 KRT19P08727 400 aa22.6■■□□□ 1.21
SQSTM1-210ENST00000506042 POLR2BP30876 1174 aaKnown RBP22.6■■□□□ 1.21
SQSTM1-210ENST00000506042 RBP5P82980 135 aa22.6■■□□□ 1.21
SQSTM1-210ENST00000506042 FAM160A1Q05DH4 1040 aa22.6■■□□□ 1.21
SQSTM1-210ENST00000506042 KCNB1Q14721 858 aa22.6■■□□□ 1.21
SQSTM1-210ENST00000506042 C8orf34Q49A92 452 aa22.6■■□□□ 1.21
SQSTM1-210ENST00000506042 L1TD1Q5T7N2 865 aaKnown RBP22.6■■□□□ 1.21
SQSTM1-210ENST00000506042 BRSK2Q8IWQ3 736 aa22.6■■□□□ 1.21
SQSTM1-210ENST00000506042 CEP295NLQ96MC4 621 aa22.6■■□□□ 1.21
SQSTM1-210ENST00000506042 PI4K2AQ9BTU6 479 aa22.6■■□□□ 1.21
SQSTM1-210ENST00000506042 EBF3Q9H4W6 596 aa22.6■■□□□ 1.21
SQSTM1-210ENST00000506042 RHOBTB1O94844 696 aa22.59■■□□□ 1.21
SQSTM1-210ENST00000506042 IDEP14735 1019 aa22.59■■□□□ 1.21
SQSTM1-210ENST00000506042 CSGALNACT2Q8N6G5 542 aa22.59■■□□□ 1.21
SQSTM1-210ENST00000506042 NOC3LQ8WTT2 800 aaKnown RBP22.59■■□□□ 1.21
SQSTM1-210ENST00000506042 USP13Q92995 863 aaPredicted RBP22.59■■□□□ 1.21
SQSTM1-210ENST00000506042 FIZ1Q96SL8 496 aa22.59■■□□□ 1.21
SQSTM1-210ENST00000506042 TRPC7Q9HCX4 862 aa22.59■■□□□ 1.21
SQSTM1-210ENST00000506042 OLFML3Q9NRN5 406 aa22.59■■□□□ 1.21
SQSTM1-210ENST00000506042 AXIN1O15169 862 aa22.58■■□□□ 1.21
SQSTM1-210ENST00000506042 EPN2O95208 641 aa22.58■■□□□ 1.21
SQSTM1-210ENST00000506042 TNNC2P02585 160 aa22.58■■□□□ 1.21
SQSTM1-210ENST00000506042 F11P03951 625 aa22.58■■□□□ 1.21
SQSTM1-210ENST00000506042 ZNF806P0C7X5 589 aa22.58■■□□□ 1.21
SQSTM1-210ENST00000506042 PFKLP17858 780 aa22.58■■□□□ 1.21
SQSTM1-210ENST00000506042 ANXA13P27216 316 aa22.58■■□□□ 1.21
SQSTM1-210ENST00000506042 DMWDQ09019 674 aa22.58■■□□□ 1.21
SQSTM1-210ENST00000506042 MTF1Q14872 753 aa22.58■■□□□ 1.21
SQSTM1-210ENST00000506042 INTS6LQ5JSJ4 861 aaKnown RBP22.58■■□□□ 1.21
SQSTM1-210ENST00000506042 DPH6Q7L8W6 267 aa22.58■■□□□ 1.21
SQSTM1-210ENST00000506042 PDCL2Q8N4E4 241 aa22.58■■□□□ 1.21
SQSTM1-210ENST00000506042 TOP6BLQ8N6T0 577 aa22.58■■□□□ 1.21
SQSTM1-210ENST00000506042 LRRC3BQ96PB8 259 aa22.58■■□□□ 1.21
SQSTM1-210ENST00000506042 SMG9Q9H0W8 520 aaKnown RBP22.58■■□□□ 1.21
SQSTM1-210ENST00000506042 DUS2Q9NX74 493 aaKnown RBP22.58■■□□□ 1.21
SQSTM1-210ENST00000506042 SCN1AP35498 2009 aa22.58■■□□□ 1.2
SQSTM1-210ENST00000506042 FRYLO94915 3013 aa22.57■■□□□ 1.2
SQSTM1-210ENST00000506042 STAT6P42226 847 aa22.57■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms