RNA–Protein interactions for RNA: ENST00000504173.1

NUP54-203, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-203ENST00000504173 TIMM13Q9Y5L4 95 aaPredicted RBP10.74□□□□□ -0.69
NUP54-203ENST00000504173 ASPMQ8IZT6 3477 aa10.74□□□□□ -0.69
NUP54-203ENST00000504173 LGALS16A8MUM7 142 aa10.73□□□□□ -0.69
NUP54-203ENST00000504173 H7C4K7 107 aa10.73□□□□□ -0.69
NUP54-203ENST00000504173 FSCN2O14926 492 aa10.73□□□□□ -0.69
NUP54-203ENST00000504173 LRRN2O75325 713 aa10.73□□□□□ -0.69
NUP54-203ENST00000504173 CYP11A1P05108 521 aa10.73□□□□□ -0.69
NUP54-203ENST00000504173 YWHAHQ04917 246 aaPredicted RBP10.73□□□□□ -0.69
NUP54-203ENST00000504173 LRMPQ12912 555 aa10.73□□□□□ -0.69
NUP54-203ENST00000504173 CAMK1Q14012 370 aa10.73□□□□□ -0.69
NUP54-203ENST00000504173 PTPN14Q15678 1187 aa10.73□□□□□ -0.69
NUP54-203ENST00000504173 PSMD5Q16401 504 aa10.73□□□□□ -0.69
NUP54-203ENST00000504173 EXOC3L4Q17RC7 722 aa10.73□□□□□ -0.69
NUP54-203ENST00000504173 FILIP1LQ4L180 1135 aa10.73□□□□□ -0.69
NUP54-203ENST00000504173 CTXN3Q4LDR2 81 aa10.73□□□□□ -0.69
NUP54-203ENST00000504173 VARS2Q5ST30 1063 aaKnown RBP10.73□□□□□ -0.69
NUP54-203ENST00000504173 OVOS1Q6IE37 1185 aa10.73□□□□□ -0.69
NUP54-203ENST00000504173 ZNF280DQ6N043 979 aa10.73□□□□□ -0.69
NUP54-203ENST00000504173 PDXDC1Q6P996 788 aa10.73□□□□□ -0.69
NUP54-203ENST00000504173 PRSS55Q6UWB4 352 aaPredicted RBP10.73□□□□□ -0.69
NUP54-203ENST00000504173 ANKS3Q6ZW76 656 aa10.73□□□□□ -0.69
NUP54-203ENST00000504173 ADGRF2Q8IZF7 708 aa10.73□□□□□ -0.69
NUP54-203ENST00000504173 PDCL2Q8N4E4 241 aa10.73□□□□□ -0.69
NUP54-203ENST00000504173 EHBP1Q8NDI1 1231 aa10.73□□□□□ -0.69
NUP54-203ENST00000504173 PIK3R5Q8WYR1 880 aa10.73□□□□□ -0.69
NUP54-203ENST00000504173 NT5C1BQ96P26 610 aa10.73□□□□□ -0.69
NUP54-203ENST00000504173 CRACR2AQ9BSW2 395 aa10.73□□□□□ -0.69
NUP54-203ENST00000504173 NIF3L1Q9GZT8 377 aa10.73□□□□□ -0.69
NUP54-203ENST00000504173 SMYD3Q9H7B4 428 aa10.73□□□□□ -0.69
NUP54-203ENST00000504173 APOBEC3GQ9HC16 384 aaKnown RBP10.73□□□□□ -0.69
NUP54-203ENST00000504173 L1RE1Q9UN81 338 aa10.73□□□□□ -0.69
NUP54-203ENST00000504173 VWA8A3KMH1 1905 aa10.73□□□□□ -0.69
NUP54-203ENST00000504173 SPEGQ15772 3267 aa10.72□□□□□ -0.69
NUP54-203ENST00000504173 C2orf71A6NGG8 1288 aa10.72□□□□□ -0.69
NUP54-203ENST00000504173 LRRC10BA6NIK2 292 aa10.72□□□□□ -0.69
NUP54-203ENST00000504173 HIDE1A8MVS5 230 aa10.72□□□□□ -0.69
NUP54-203ENST00000504173 GLP2RO95838 553 aa10.72□□□□□ -0.69
NUP54-203ENST00000504173 AOC1P19801 751 aa10.72□□□□□ -0.69
NUP54-203ENST00000504173 RAP1GAPP47736 663 aa10.72□□□□□ -0.69
NUP54-203ENST00000504173 FANCCQ00597 558 aa10.72□□□□□ -0.69
NUP54-203ENST00000504173 CREMQ03060 361 aa10.72□□□□□ -0.69
NUP54-203ENST00000504173 UBXN1Q04323 297 aa10.72□□□□□ -0.69
NUP54-203ENST00000504173 SOWAHAQ2M3V2 549 aa10.72□□□□□ -0.69
NUP54-203ENST00000504173 CWF19L1Q69YN2 538 aaKnown RBP10.72□□□□□ -0.69
NUP54-203ENST00000504173 DPH6Q7L8W6 267 aa10.72□□□□□ -0.69
NUP54-203ENST00000504173 APTXQ7Z2E3 356 aaKnown RBP10.72□□□□□ -0.69
NUP54-203ENST00000504173 GAS2L3Q86XJ1 694 aa10.72□□□□□ -0.69
NUP54-203ENST00000504173 GPR65Q8IYL9 337 aa10.72□□□□□ -0.69
NUP54-203ENST00000504173 THEM5Q8N1Q8 247 aa10.72□□□□□ -0.69
NUP54-203ENST00000504173 TMEM86AQ8N2M4 240 aa10.72□□□□□ -0.69
NUP54-203ENST00000504173 PPM1KQ8N3J5 372 aa10.72□□□□□ -0.69
NUP54-203ENST00000504173 MRPL43Q8N983 215 aaKnown RBP10.72□□□□□ -0.69
NUP54-203ENST00000504173 LMO3Q8TAP4 145 aa10.72□□□□□ -0.69
NUP54-203ENST00000504173 LNX1Q8TBB1 728 aaPredicted RBP10.72□□□□□ -0.69
NUP54-203ENST00000504173 SPATA18Q8TC71 538 aa10.72□□□□□ -0.69
NUP54-203ENST00000504173 TATDN2Q93075 761 aa10.72□□□□□ -0.69
NUP54-203ENST00000504173 MRPL45Q9BRJ2 306 aaKnown RBP10.72□□□□□ -0.69
NUP54-203ENST00000504173 EMILIN2Q9BXX0 1053 aa10.72□□□□□ -0.69
NUP54-203ENST00000504173 RBSNQ9H1K0 784 aa10.72□□□□□ -0.69
NUP54-203ENST00000504173 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP10.72□□□□□ -0.69
NUP54-203ENST00000504173 IRAK3Q9Y616 596 aa10.72□□□□□ -0.69
NUP54-203ENST00000504173 TSC2P49815 1807 aa10.72□□□□□ -0.69
NUP54-203ENST00000504173 SOBPA7XYQ1 873 aa10.71□□□□□ -0.69
NUP54-203ENST00000504173 LILRB3O75022 631 aa10.71□□□□□ -0.69
NUP54-203ENST00000504173 TACC1O75410 805 aa10.71□□□□□ -0.69
NUP54-203ENST00000504173 OAZ2O95190 189 aa10.71□□□□□ -0.69
NUP54-203ENST00000504173 CNPP09543 421 aaKnown RBP10.71□□□□□ -0.69
NUP54-203ENST00000504173 WEE2P0C1S8 567 aa10.71□□□□□ -0.69
NUP54-203ENST00000504173 RPL17P18621 184 aaKnown RBP10.71□□□□□ -0.69
NUP54-203ENST00000504173 SLC9A1P19634 815 aa10.71□□□□□ -0.69
NUP54-203ENST00000504173 WARSP23381 471 aaKnown RBP10.71□□□□□ -0.69
NUP54-203ENST00000504173 TBXAS1P24557 533 aaPredicted RBP10.71□□□□□ -0.69
NUP54-203ENST00000504173 PON1P27169 355 aa10.71□□□□□ -0.69
NUP54-203ENST00000504173 ASPAP45381 313 aa10.71□□□□□ -0.69
NUP54-203ENST00000504173 LHX1P48742 406 aa10.71□□□□□ -0.69
NUP54-203ENST00000504173 CDH8P55286 799 aa10.71□□□□□ -0.69
NUP54-203ENST00000504173 CUL2Q13617 745 aa10.71□□□□□ -0.69
NUP54-203ENST00000504173 MRPL58Q14197 206 aaKnown RBP10.71□□□□□ -0.69
NUP54-203ENST00000504173 TRIM65Q6PJ69 517 aa10.71□□□□□ -0.69
NUP54-203ENST00000504173 LIMS2Q7Z4I7 341 aa10.71□□□□□ -0.69
NUP54-203ENST00000504173 OSTM1Q86WC4 334 aa10.71□□□□□ -0.69
NUP54-203ENST00000504173 GLYCTKQ8IVS8 523 aa10.71□□□□□ -0.69
NUP54-203ENST00000504173 DTWD2Q8NBA8 298 aa10.71□□□□□ -0.69
NUP54-203ENST00000504173 OR6B3Q8NGW1 331 aa10.71□□□□□ -0.69
NUP54-203ENST00000504173 FAXDC2Q96IV6 333 aa10.71□□□□□ -0.69
NUP54-203ENST00000504173 PCMTD1Q96MG8 357 aaPredicted RBP10.71□□□□□ -0.69
NUP54-203ENST00000504173 HINFPQ9BQA5 517 aa10.71□□□□□ -0.69
NUP54-203ENST00000504173 RTKNQ9BST9 563 aa10.71□□□□□ -0.69
NUP54-203ENST00000504173 LSM14BQ9BX40 385 aaKnown RBP10.71□□□□□ -0.69
NUP54-203ENST00000504173 BCO2Q9BYV7 579 aa10.71□□□□□ -0.69
NUP54-203ENST00000504173 SDCBP2Q9H190 292 aa10.71□□□□□ -0.69
NUP54-203ENST00000504173 SNX25Q9H3E2 840 aa10.71□□□□□ -0.69
NUP54-203ENST00000504173 MFSD1Q9H3U5 465 aa10.71□□□□□ -0.69
NUP54-203ENST00000504173 CYP3A43Q9HB55 503 aa10.71□□□□□ -0.69
NUP54-203ENST00000504173 RXFP1Q9HBX9 757 aa10.71□□□□□ -0.69
NUP54-203ENST00000504173 RTN4Q9NQC3 1192 aaKnown RBP10.71□□□□□ -0.69
NUP54-203ENST00000504173 DDX43Q9NXZ2 648 aaKnown RBP10.71□□□□□ -0.69
NUP54-203ENST00000504173 FNIP2Q9P278 1114 aa10.71□□□□□ -0.69
NUP54-203ENST00000504173 MTRRQ9UBK8 725 aa10.71□□□□□ -0.69
NUP54-203ENST00000504173 FBXL5Q9UKA1 691 aa10.71□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms