RNA–Protein interactions for RNA: ENST00000496622.1

SSBP1-213, Transcript of single stranded DNA binding protein 1, humanhuman

TSL 1 (best)

Gene SSBP1, Length 2,620 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP1-213ENST00000496622 LRRIQ3A6PVS8 624 aaPredicted RBP6.55□□□□□ -1.36
SSBP1-213ENST00000496622 RPL17P18621 184 aaKnown RBP6.55□□□□□ -1.36
SSBP1-213ENST00000496622 ABCB4P21439 1286 aa6.55□□□□□ -1.36
SSBP1-213ENST00000496622 HNRNPH3P31942 346 aaKnown RBP6.55□□□□□ -1.36
SSBP1-213ENST00000496622 GTF2A2P52657 109 aa6.55□□□□□ -1.36
SSBP1-213ENST00000496622 KIF5AQ12840 1032 aa6.55□□□□□ -1.36
SSBP1-213ENST00000496622 CAPSQ13938 189 aa6.55□□□□□ -1.36
SSBP1-213ENST00000496622 EMC10Q5UCC4 262 aa6.55□□□□□ -1.36
SSBP1-213ENST00000496622 TAPT1Q6NXT6 567 aa6.55□□□□□ -1.36
SSBP1-213ENST00000496622 FBXO38Q6PIJ6 1188 aa6.55□□□□□ -1.36
SSBP1-213ENST00000496622 STXBP4Q6ZWJ1 553 aa6.55□□□□□ -1.36
SSBP1-213ENST00000496622 SPATS2Q86XZ4 545 aaKnown RBP6.55□□□□□ -1.36
SSBP1-213ENST00000496622 PPM1KQ8N3J5 372 aa6.55□□□□□ -1.36
SSBP1-213ENST00000496622 SLC20A1Q8WUM9 679 aa6.55□□□□□ -1.36
SSBP1-213ENST00000496622 ANKRD49Q8WVL7 239 aa6.55□□□□□ -1.36
SSBP1-213ENST00000496622 C1orf74Q96LT6 269 aa6.55□□□□□ -1.36
SSBP1-213ENST00000496622 MPHOSPH6Q99547 160 aaKnown RBP6.55□□□□□ -1.36
SSBP1-213ENST00000496622 NTPCRQ9BSD7 190 aaKnown RBP6.55□□□□□ -1.36
SSBP1-213ENST00000496622 GPR88Q9GZN0 384 aa6.55□□□□□ -1.36
SSBP1-213ENST00000496622 SAGE1Q9NXZ1 904 aa6.55□□□□□ -1.36
SSBP1-213ENST00000496622 SLC5A4Q9NY91 659 aa6.55□□□□□ -1.36
SSBP1-213ENST00000496622 ARHGAP28Q9P2N2 729 aa6.55□□□□□ -1.36
SSBP1-213ENST00000496622 KIAA1217Q5T5P2 1943 aa6.55□□□□□ -1.36
SSBP1-213ENST00000496622 PHLPP2Q6ZVD8 1323 aa6.55□□□□□ -1.36
SSBP1-213ENST00000496622 TMEM221A6NGB7 291 aa6.55□□□□□ -1.36
SSBP1-213ENST00000496622 SLC16A3O15427 465 aaKnown RBP6.55□□□□□ -1.36
SSBP1-213ENST00000496622 ATP8B1O43520 1251 aa6.55□□□□□ -1.36
SSBP1-213ENST00000496622 STAM2O75886 525 aa6.55□□□□□ -1.36
SSBP1-213ENST00000496622 DKK1O94907 266 aa6.55□□□□□ -1.36
SSBP1-213ENST00000496622 FTCDO95954 541 aa6.55□□□□□ -1.36
SSBP1-213ENST00000496622 KRT13P13646 458 aa6.55□□□□□ -1.36
SSBP1-213ENST00000496622 CYP2B6P20813 491 aa6.55□□□□□ -1.36
SSBP1-213ENST00000496622 FGFR4P22455 802 aa6.55□□□□□ -1.36
SSBP1-213ENST00000496622 LIG4P49917 911 aa6.55□□□□□ -1.36
SSBP1-213ENST00000496622 CTAG1AP78358 180 aa6.55□□□□□ -1.36
SSBP1-213ENST00000496622 MYL7Q01449 175 aa6.55□□□□□ -1.36
SSBP1-213ENST00000496622 LRP8Q14114 963 aa6.55□□□□□ -1.36
SSBP1-213ENST00000496622 PLCB4Q15147 1175 aa6.55□□□□□ -1.36
SSBP1-213ENST00000496622 TARBP2Q15633 366 aaKnown RBP6.55□□□□□ -1.36
SSBP1-213ENST00000496622 TMEM214Q6NUQ4 689 aaKnown RBP6.55□□□□□ -1.36
SSBP1-213ENST00000496622 FOXR2Q6PJQ5 311 aa6.55□□□□□ -1.36
SSBP1-213ENST00000496622 MAMDC4Q6UXC1 1216 aa6.55□□□□□ -1.36
SSBP1-213ENST00000496622 SV2AQ7L0J3 742 aa6.55□□□□□ -1.36
SSBP1-213ENST00000496622 PHLDB2Q86SQ0 1253 aa6.55□□□□□ -1.36
SSBP1-213ENST00000496622 TMEM192Q8IY95 271 aa6.55□□□□□ -1.36
SSBP1-213ENST00000496622 KIRREL3Q8IZU9 778 aa6.55□□□□□ -1.36
SSBP1-213ENST00000496622 MCPH1Q8NEM0 835 aa6.55□□□□□ -1.36
SSBP1-213ENST00000496622 DEPTORQ8TB45 409 aa6.55□□□□□ -1.36
SSBP1-213ENST00000496622 SUN5Q8TC36 379 aa6.55□□□□□ -1.36
SSBP1-213ENST00000496622 COG1Q8WTW3 980 aa6.55□□□□□ -1.36
SSBP1-213ENST00000496622 KIFAP3Q92845 792 aa6.55□□□□□ -1.36
SSBP1-213ENST00000496622 IFT74Q96LB3 600 aa6.55□□□□□ -1.36
SSBP1-213ENST00000496622 INTS2Q9H0H0 1204 aaKnown RBP6.55□□□□□ -1.36
SSBP1-213ENST00000496622 TSPAN10Q9H1Z9 355 aaPredicted RBP6.55□□□□□ -1.36
SSBP1-213ENST00000496622 MROH8Q9H579 483 aa6.55□□□□□ -1.36
SSBP1-213ENST00000496622 FLRT1Q9NZU1 646 aa6.55□□□□□ -1.36
SSBP1-213ENST00000496622 TUBGCP4Q9UGJ1 667 aa6.55□□□□□ -1.36
SSBP1-213ENST00000496622 CROTQ9UKG9 612 aa6.55□□□□□ -1.36
SSBP1-213ENST00000496622 ACAD8Q9UKU7 415 aa6.55□□□□□ -1.36
SSBP1-213ENST00000496622 PTPRFP10586 1907 aa6.55□□□□□ -1.36
SSBP1-213ENST00000496622 CTAGE9A4FU28 777 aa6.54□□□□□ -1.36
SSBP1-213ENST00000496622 SLC35F4A4IF30 521 aa6.54□□□□□ -1.36
SSBP1-213ENST00000496622 FAM25EA8MYX2 175 aa6.54□□□□□ -1.36
SSBP1-213ENST00000496622 SART1O43290 800 aaKnown RBP6.54□□□□□ -1.36
SSBP1-213ENST00000496622 KRT86O43790 486 aa6.54□□□□□ -1.36
SSBP1-213ENST00000496622 ERLIN2O94905 339 aa6.54□□□□□ -1.36
SSBP1-213ENST00000496622 VTNP04004 478 aa6.54□□□□□ -1.36
SSBP1-213ENST00000496622 THBS1P07996 1170 aa6.54□□□□□ -1.36
SSBP1-213ENST00000496622 INSRRP14616 1297 aa6.54□□□□□ -1.36
SSBP1-213ENST00000496622 TNNI1P19237 187 aa6.54□□□□□ -1.36
SSBP1-213ENST00000496622 ENDOUP21128 410 aaKnown RBP6.54□□□□□ -1.36
SSBP1-213ENST00000496622 PLA2G4AP47712 749 aa6.54□□□□□ -1.36
SSBP1-213ENST00000496622 VAV2P52735 878 aa6.54□□□□□ -1.36
SSBP1-213ENST00000496622 KRT83P78385 493 aa6.54□□□□□ -1.36
SSBP1-213ENST00000496622 COX10Q12887 443 aa6.54□□□□□ -1.36
SSBP1-213ENST00000496622 ASIC2Q16515 512 aa6.54□□□□□ -1.36
SSBP1-213ENST00000496622 ZNF792Q3KQV3 632 aa6.54□□□□□ -1.36
SSBP1-213ENST00000496622 CWF19L1Q69YN2 538 aaKnown RBP6.54□□□□□ -1.36
SSBP1-213ENST00000496622 CRELD2Q6UXH1 353 aaPredicted RBP6.54□□□□□ -1.36
SSBP1-213ENST00000496622 CCDC170Q8IYT3 715 aa6.54□□□□□ -1.36
SSBP1-213ENST00000496622 RNF168Q8IYW5 571 aaPredicted RBP6.54□□□□□ -1.36
SSBP1-213ENST00000496622 NOA1Q8NC60 698 aaKnown RBP6.54□□□□□ -1.36
SSBP1-213ENST00000496622 APPL2Q8NEU8 664 aa6.54□□□□□ -1.36
SSBP1-213ENST00000496622 RDM1Q8NG50 284 aa6.54□□□□□ -1.36
SSBP1-213ENST00000496622 ABCG4Q9H172 646 aa6.54□□□□□ -1.36
SSBP1-213ENST00000496622 SYNCQ9H7C4 482 aa6.54□□□□□ -1.36
SSBP1-213ENST00000496622 PLCB1Q9NQ66 1216 aa6.54□□□□□ -1.36
SSBP1-213ENST00000496622 GOLGA6L9A6NEM1 432 aa6.54□□□□□ -1.36
SSBP1-213ENST00000496622 INO80B-WBP1J3KQ70 363 aa6.54□□□□□ -1.36
SSBP1-213ENST00000496622 KIF2AO00139 706 aaPredicted RBP6.54□□□□□ -1.36
SSBP1-213ENST00000496622 PDE2AO00408 941 aaPredicted RBP6.54□□□□□ -1.36
SSBP1-213ENST00000496622 DDX3XO00571 662 aaKnown RBP eCLIP6.54□□□□□ -1.367e-9■□□□□ 11
SSBP1-213ENST00000496622 CYP26A1O43174 497 aa6.54□□□□□ -1.36
SSBP1-213ENST00000496622 DYNC1LI2O43237 492 aaPredicted RBP6.54□□□□□ -1.36
SSBP1-213ENST00000496622 ZEB2O60315 1214 aa6.54□□□□□ -1.36
SSBP1-213ENST00000496622 SERPING1P05155 500 aa6.54□□□□□ -1.36
SSBP1-213ENST00000496622 RHOXF2BP0C7M4 288 aa6.54□□□□□ -1.36
SSBP1-213ENST00000496622 FUT4P22083 530 aa6.54□□□□□ -1.36
SSBP1-213ENST00000496622 ARL2P36404 184 aa6.54□□□□□ -1.36
SSBP1-213ENST00000496622 TSPAN7P41732 249 aa6.54□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms