RNA–Protein interactions for RNA: ENST00000496458.1

SF3B1-212, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 475 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-212ENST00000496458 NPR1P16066 1061 aa7.13□□□□□ -1.27
SF3B1-212ENST00000496458 AGFG1P52594 562 aaKnown RBP7.13□□□□□ -1.27
SF3B1-212ENST00000496458 LILRA4P59901 499 aa7.13□□□□□ -1.27
SF3B1-212ENST00000496458 NXNQ6DKJ4 435 aa7.13□□□□□ -1.27
SF3B1-212ENST00000496458 TCEAL8Q8IYN2 117 aa7.13□□□□□ -1.27
SF3B1-212ENST00000496458 FAM109AQ8N4B1 249 aa7.13□□□□□ -1.27
SF3B1-212ENST00000496458 MAGEB6Q8N7X4 407 aa7.13□□□□□ -1.27
SF3B1-212ENST00000496458 FKBP10Q96AY3 582 aa7.13□□□□□ -1.27
SF3B1-212ENST00000496458 KLK15Q9H2R5 256 aa7.13□□□□□ -1.27
SF3B1-212ENST00000496458 ASB6Q9NWX5 421 aa7.13□□□□□ -1.27
SF3B1-212ENST00000496458 SLC17A6Q9P2U8 582 aa7.13□□□□□ -1.27
SF3B1-212ENST00000496458 LINC00473A8K010 186 aa7.12□□□□□ -1.27
SF3B1-212ENST00000496458 TSPAN6O43657 245 aa7.12□□□□□ -1.27
SF3B1-212ENST00000496458 PDHA1P08559 390 aa7.12□□□□□ -1.27
SF3B1-212ENST00000496458 ATXN1LP0C7T5 689 aaKnown RBP7.12□□□□□ -1.27
SF3B1-212ENST00000496458 ELFN1P0C7U0 828 aa7.12□□□□□ -1.27
SF3B1-212ENST00000496458 KITP10721 976 aa7.12□□□□□ -1.27
SF3B1-212ENST00000496458 UCP3P55916 312 aa7.12□□□□□ -1.27
SF3B1-212ENST00000496458 LOXL3P58215 753 aa7.12□□□□□ -1.27
SF3B1-212ENST00000496458 EIF2B5Q13144 721 aaKnown RBP7.12□□□□□ -1.27
SF3B1-212ENST00000496458 MLC1Q15049 377 aa7.12□□□□□ -1.27
SF3B1-212ENST00000496458 IQCB1Q15051 598 aa7.12□□□□□ -1.27
SF3B1-212ENST00000496458 AKNAD1Q5T1N1 836 aa7.12□□□□□ -1.27
SF3B1-212ENST00000496458 FAM98AQ8NCA5 519 aaKnown RBP7.12□□□□□ -1.27
SF3B1-212ENST00000496458 PBKQ96KB5 322 aa7.12□□□□□ -1.27
SF3B1-212ENST00000496458 PTGFRNQ9P2B2 879 aa7.12□□□□□ -1.27
SF3B1-212ENST00000496458 XPR1Q9UBH6 696 aa7.12□□□□□ -1.27
SF3B1-212ENST00000496458 PPM1DO15297 605 aa7.11□□□□□ -1.27
SF3B1-212ENST00000496458 URI1O94763 535 aaPredicted RBP7.11□□□□□ -1.27
SF3B1-212ENST00000496458 PXNP49023 591 aaPredicted RBP7.11□□□□□ -1.27
SF3B1-212ENST00000496458 SLC11A2P49281 568 aa7.11□□□□□ -1.27
SF3B1-212ENST00000496458 GPSM2P81274 684 aa7.11□□□□□ -1.27
SF3B1-212ENST00000496458 TBCCQ15814 346 aa7.11□□□□□ -1.27
SF3B1-212ENST00000496458 ARHGAP29Q52LW3 1261 aa7.11□□□□□ -1.27
SF3B1-212ENST00000496458 DPY19L2P1Q6NXN4 242 aa7.11□□□□□ -1.27
SF3B1-212ENST00000496458 GRASPQ7Z6J2 395 aaPredicted RBP7.11□□□□□ -1.27
SF3B1-212ENST00000496458 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP7.11□□□□□ -1.27
SF3B1-212ENST00000496458 ALG8Q9BVK2 526 aa7.11□□□□□ -1.27
SF3B1-212ENST00000496458 TRIM54Q9BYV2 358 aa7.11□□□□□ -1.27
SF3B1-212ENST00000496458 SERHLQ9NQF3 203 aa7.11□□□□□ -1.27
SF3B1-212ENST00000496458 SEMA4GQ9NTN9 838 aa7.11□□□□□ -1.27
SF3B1-212ENST00000496458 CAMSAP3Q9P1Y5 1249 aaPredicted RBP7.11□□□□□ -1.27
SF3B1-212ENST00000496458 ST3GAL5Q9UNP4 418 aa7.11□□□□□ -1.27
SF3B1-212ENST00000496458 TMX2Q9Y320 296 aa7.11□□□□□ -1.27
SF3B1-212ENST00000496458 CAPN8A6NHC0 703 aa7.1□□□□□ -1.27
SF3B1-212ENST00000496458 FAM227AF5H4B4 570 aa7.1□□□□□ -1.27
SF3B1-212ENST00000496458 MYO1CO00159 1063 aa7.1□□□□□ -1.27
SF3B1-212ENST00000496458 ERC2O15083 957 aa7.1□□□□□ -1.27
SF3B1-212ENST00000496458 PHGDHO43175 533 aaKnown RBP7.1□□□□□ -1.27
SF3B1-212ENST00000496458 IGLV2-14P01704 120 aa7.1□□□□□ -1.27
SF3B1-212ENST00000496458 NR2F6P10588 404 aa7.1□□□□□ -1.27
SF3B1-212ENST00000496458 VIPR2P41587 438 aa7.1□□□□□ -1.27
SF3B1-212ENST00000496458 ELLP55199 621 aaPredicted RBP7.1□□□□□ -1.27
SF3B1-212ENST00000496458 TSTD2Q5T7W7 516 aa7.1□□□□□ -1.27
SF3B1-212ENST00000496458 ARHGAP40Q5TG30 622 aa7.1□□□□□ -1.27
SF3B1-212ENST00000496458 SWSAP1Q6NVH7 229 aa7.1□□□□□ -1.27
SF3B1-212ENST00000496458 ZNF783Q6ZMS7 281 aa7.1□□□□□ -1.27
SF3B1-212ENST00000496458 MAEAQ7L5Y9 396 aa7.1□□□□□ -1.27
SF3B1-212ENST00000496458 KBTBD7Q8WVZ9 684 aa7.1□□□□□ -1.27
SF3B1-212ENST00000496458 RFKQ969G6 155 aa7.1□□□□□ -1.27
SF3B1-212ENST00000496458 UROC1Q96N76 676 aa7.1□□□□□ -1.27
SF3B1-212ENST00000496458 MOGAT1Q96PD6 335 aa7.1□□□□□ -1.27
SF3B1-212ENST00000496458 NELL2Q99435 816 aa7.1□□□□□ -1.27
SF3B1-212ENST00000496458 TMEM60Q9H2L4 133 aa7.1□□□□□ -1.27
SF3B1-212ENST00000496458 ATP6V0A4Q9HBG4 840 aa7.1□□□□□ -1.27
SF3B1-212ENST00000496458 CPNE5Q9HCH3 593 aa7.1□□□□□ -1.27
SF3B1-212ENST00000496458 C1orf112Q9NSG2 853 aa7.1□□□□□ -1.27
SF3B1-212ENST00000496458 EHD3Q9NZN3 535 aa7.1□□□□□ -1.27
SF3B1-212ENST00000496458 DKK3Q9UBP4 350 aa7.1□□□□□ -1.27
SF3B1-212ENST00000496458 SERTAD3Q9UJW9 196 aa7.1□□□□□ -1.27
SF3B1-212ENST00000496458 COX11Q9Y6N1 276 aa7.1□□□□□ -1.27
SF3B1-212ENST00000496458 THP07101 528 aa7.09□□□□□ -1.27
SF3B1-212ENST00000496458 ARFIP2P53365 341 aa7.09□□□□□ -1.27
SF3B1-212ENST00000496458 LLGL1Q15334 1064 aa7.09□□□□□ -1.27
SF3B1-212ENST00000496458 ICE2Q659A1 982 aa7.09□□□□□ -1.27
SF3B1-212ENST00000496458 SFRP4Q6FHJ7 346 aaPredicted RBP7.09□□□□□ -1.27
SF3B1-212ENST00000496458 ZNF575Q86XF7 245 aa7.09□□□□□ -1.27
SF3B1-212ENST00000496458 MYO1HQ8N1T3 1032 aa7.09□□□□□ -1.27
SF3B1-212ENST00000496458 TSR2Q969E8 191 aaKnown RBP7.09□□□□□ -1.27
SF3B1-212ENST00000496458 ZNF764Q96H86 408 aaPredicted RBP7.09□□□□□ -1.27
SF3B1-212ENST00000496458 ENTPD2Q9Y5L3 495 aa7.09□□□□□ -1.27
SF3B1-212ENST00000496458 BTN3A1O00481 513 aa7.08□□□□□ -1.28
SF3B1-212ENST00000496458 C1QL1O75973 258 aa7.08□□□□□ -1.28
SF3B1-212ENST00000496458 TTLL1O95922 423 aa7.08□□□□□ -1.28
SF3B1-212ENST00000496458 ZFXP17010 805 aaPredicted RBP7.08□□□□□ -1.28
SF3B1-212ENST00000496458 SLC7A1P30825 629 aa7.08□□□□□ -1.28
SF3B1-212ENST00000496458 LMBRD2Q68DH5 695 aaPredicted RBP7.08□□□□□ -1.28
SF3B1-212ENST00000496458 RGS7BPQ6MZT1 257 aaPredicted RBP7.08□□□□□ -1.28
SF3B1-212ENST00000496458 KIAA0319LQ8IZA0 1049 aa7.08□□□□□ -1.28
SF3B1-212ENST00000496458 SLC15A4Q8N697 577 aa7.08□□□□□ -1.28
SF3B1-212ENST00000496458 DNAJC5GQ8N7S2 189 aa7.08□□□□□ -1.28
SF3B1-212ENST00000496458 OR6B3Q8NGW1 331 aa7.08□□□□□ -1.28
SF3B1-212ENST00000496458 IL31RAQ8NI17 732 aa7.08□□□□□ -1.28
SF3B1-212ENST00000496458 ATRIPQ8WXE1 791 aa7.08□□□□□ -1.28
SF3B1-212ENST00000496458 PTDSS2Q9BVG9 487 aa7.08□□□□□ -1.28
SF3B1-212ENST00000496458 KLHL42Q9P2K6 505 aa7.08□□□□□ -1.28
SF3B1-212ENST00000496458 DDX20Q9UHI6 824 aaKnown RBP7.08□□□□□ -1.28
SF3B1-212ENST00000496458 SHOC2Q9UQ13 582 aa7.08□□□□□ -1.28
SF3B1-212ENST00000496458 POLR2AP24928 1970 aaKnown RBP7.08□□□□□ -1.28
SF3B1-212ENST00000496458 A6NNZ2 444 aa7.07□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms