RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 UNC45AQ9H3U1 944 aa10.17□□□□□ -0.78
SYNE1-230ENST00000495090 LMCD1Q9NZU5 365 aa10.17□□□□□ -0.78
SYNE1-230ENST00000495090 SLC17A7Q9P2U7 560 aa10.17□□□□□ -0.78
SYNE1-230ENST00000495090 SRP68Q9UHB9 627 aaKnown RBP10.17□□□□□ -0.78
SYNE1-230ENST00000495090 CIDEBQ9UHD4 219 aa10.17□□□□□ -0.78
SYNE1-230ENST00000495090 SYNPO2Q9UMS6 1093 aa10.17□□□□□ -0.78
SYNE1-230ENST00000495090 EXOC7Q9UPT5 735 aa10.17□□□□□ -0.78
SYNE1-230ENST00000495090 PPME1Q9Y570 386 aa10.17□□□□□ -0.78
SYNE1-230ENST00000495090 SNCAIPQ9Y6H5 919 aa10.17□□□□□ -0.78
SYNE1-230ENST00000495090 IQANK1A0A1B0GTG1 560 aa10.16□□□□□ -0.78
SYNE1-230ENST00000495090 B2RBV5 119 aa10.16□□□□□ -0.78
SYNE1-230ENST00000495090 TISP43B9A030 160 aa10.16□□□□□ -0.78
SYNE1-230ENST00000495090 BTBD19C9JJ37 291 aa10.16□□□□□ -0.78
SYNE1-230ENST00000495090 BUD23O43709 281 aaKnown RBP10.16□□□□□ -0.78
SYNE1-230ENST00000495090 LPXNO60711 386 aa10.16□□□□□ -0.78
SYNE1-230ENST00000495090 ZCCHC18P0CG32 403 aa10.16□□□□□ -0.78
SYNE1-230ENST00000495090 MYL2P10916 166 aa10.16□□□□□ -0.78
SYNE1-230ENST00000495090 HOXA13P31271 388 aaPredicted RBP10.16□□□□□ -0.78
SYNE1-230ENST00000495090 ECE1P42892 770 aa10.16□□□□□ -0.78
SYNE1-230ENST00000495090 NCKAP1LP55160 1127 aa10.16□□□□□ -0.78
SYNE1-230ENST00000495090 MAMLD1Q13495 774 aa10.16□□□□□ -0.78
SYNE1-230ENST00000495090 MAP7Q14244 749 aa10.16□□□□□ -0.78
SYNE1-230ENST00000495090 CEP55Q53EZ4 464 aa10.16□□□□□ -0.78
SYNE1-230ENST00000495090 HAUS6Q7Z4H7 955 aa10.16□□□□□ -0.78
SYNE1-230ENST00000495090 NLRX1Q86UT6 975 aa10.16□□□□□ -0.78
SYNE1-230ENST00000495090 PHF13Q86YI8 300 aaPredicted RBP10.16□□□□□ -0.78
SYNE1-230ENST00000495090 PPIL6Q8IXY8 311 aa10.16□□□□□ -0.78
SYNE1-230ENST00000495090 ULK2Q8IYT8 1036 aa10.16□□□□□ -0.78
SYNE1-230ENST00000495090 CCDC24Q8N4L8 307 aa10.16□□□□□ -0.78
SYNE1-230ENST00000495090 PYROXD1Q8WU10 500 aa10.16□□□□□ -0.78
SYNE1-230ENST00000495090 NAT14Q8WUY8 206 aa10.16□□□□□ -0.78
SYNE1-230ENST00000495090 PRR11Q96HE9 360 aaPredicted RBP10.16□□□□□ -0.78
SYNE1-230ENST00000495090 MFSD14AQ96MC6 490 aa10.16□□□□□ -0.78
SYNE1-230ENST00000495090 FBXL18Q96ME1 805 aa10.16□□□□□ -0.78
SYNE1-230ENST00000495090 PANX3Q96QZ0 392 aa10.16□□□□□ -0.78
SYNE1-230ENST00000495090 NMUR2Q9GZQ4 415 aa10.16□□□□□ -0.78
SYNE1-230ENST00000495090 IP6K2Q9UHH9 426 aa10.16□□□□□ -0.78
SYNE1-230ENST00000495090 TAGLN3Q9UI15 199 aa10.16□□□□□ -0.78
SYNE1-230ENST00000495090 SORCS3Q9UPU3 1222 aa10.16□□□□□ -0.78
SYNE1-230ENST00000495090 WDR91A4D1P6 747 aa10.15□□□□□ -0.78
SYNE1-230ENST00000495090 SPECC1L-ADORA2AF8WAN1 911 aa10.15□□□□□ -0.78
SYNE1-230ENST00000495090 MT-ND3P03897 115 aa10.15□□□□□ -0.78
SYNE1-230ENST00000495090 ZSCAN5DPP0CG00 497 aa10.15□□□□□ -0.78
SYNE1-230ENST00000495090 KRT5P13647 590 aa10.15□□□□□ -0.78
SYNE1-230ENST00000495090 CD58P19256 250 aa10.15□□□□□ -0.78
SYNE1-230ENST00000495090 ASPHQ12797 758 aa10.15□□□□□ -0.78
SYNE1-230ENST00000495090 CBLBQ13191 982 aa10.15□□□□□ -0.78
SYNE1-230ENST00000495090 TFDP1Q14186 410 aa10.15□□□□□ -0.78
SYNE1-230ENST00000495090 MAP3K21Q5TCX8 1036 aa10.15□□□□□ -0.78
SYNE1-230ENST00000495090 FAM43BQ6ZT52 329 aaPredicted RBP10.15□□□□□ -0.78
SYNE1-230ENST00000495090 SH2D5Q6ZV89 423 aa10.15□□□□□ -0.78
SYNE1-230ENST00000495090 TMEM179Q6ZVK1 233 aa10.15□□□□□ -0.78
SYNE1-230ENST00000495090 PDSS2Q86YH6 399 aa10.15□□□□□ -0.78
SYNE1-230ENST00000495090 SIAH1Q8IUQ4 282 aa10.15□□□□□ -0.78
SYNE1-230ENST00000495090 ALDH16A1Q8IZ83 802 aa10.15□□□□□ -0.78
SYNE1-230ENST00000495090 RBM15BQ8NDT2 890 aaKnown RBP10.15□□□□□ -0.78
SYNE1-230ENST00000495090 OR6Y1Q8NGX8 325 aa10.15□□□□□ -0.78
SYNE1-230ENST00000495090 RAB3IL1Q8TBN0 382 aa10.15□□□□□ -0.78
SYNE1-230ENST00000495090 CERKQ8TCT0 537 aa10.15□□□□□ -0.78
SYNE1-230ENST00000495090 MIPOL1Q8TD10 442 aa10.15□□□□□ -0.78
SYNE1-230ENST00000495090 TAS1R2Q8TE23 839 aa10.15□□□□□ -0.78
SYNE1-230ENST00000495090 IRGQQ8WZA9 623 aa10.15□□□□□ -0.78
SYNE1-230ENST00000495090 APBB2Q92870 758 aa10.15□□□□□ -0.78
SYNE1-230ENST00000495090 FAM118BQ9BPY3 351 aa10.15□□□□□ -0.78
SYNE1-230ENST00000495090 ZNF577Q9BSK1 485 aa10.15□□□□□ -0.78
SYNE1-230ENST00000495090 WWP1Q9H0M0 922 aa10.15□□□□□ -0.78
SYNE1-230ENST00000495090 RGPD3A6NKT7 1758 aaPredicted RBP10.15□□□□□ -0.78
SYNE1-230ENST00000495090 RGPD4Q7Z3J3 1758 aa10.15□□□□□ -0.78
SYNE1-230ENST00000495090 SIPA1L1O43166 1804 aa10.15□□□□□ -0.78
SYNE1-230ENST00000495090 SLX4Q8IY92 1834 aa10.15□□□□□ -0.78
SYNE1-230ENST00000495090 H3BRJ5 948 aa10.15□□□□□ -0.79
SYNE1-230ENST00000495090 RAD21O60216 631 aa10.15□□□□□ -0.79
SYNE1-230ENST00000495090 RNASEH1O60930 286 aaKnown RBP10.15□□□□□ -0.79
SYNE1-230ENST00000495090 SPAG6O75602 509 aa10.15□□□□□ -0.79
SYNE1-230ENST00000495090 LYPLA2O95372 231 aa10.15□□□□□ -0.79
SYNE1-230ENST00000495090 STIP1P31948 543 aaKnown RBP10.15□□□□□ -0.79
SYNE1-230ENST00000495090 RGS2P41220 211 aa10.15□□□□□ -0.79
SYNE1-230ENST00000495090 NOP14P78316 857 aaKnown RBP10.15□□□□□ -0.79
SYNE1-230ENST00000495090 CRY2Q49AN0 593 aa10.15□□□□□ -0.79
SYNE1-230ENST00000495090 CC2D2BQ6DHV5 1058 aa10.15□□□□□ -0.79
SYNE1-230ENST00000495090 HHIPL2Q6UWX4 724 aa10.15□□□□□ -0.79
SYNE1-230ENST00000495090 C3orf62Q6ZUJ4 267 aa10.15□□□□□ -0.79
SYNE1-230ENST00000495090 TTC7BQ86TV6 843 aa10.15□□□□□ -0.79
SYNE1-230ENST00000495090 SLC51AQ86UW1 340 aa10.15□□□□□ -0.79
SYNE1-230ENST00000495090 CBWD2Q8IUF1 395 aa10.15□□□□□ -0.79
SYNE1-230ENST00000495090 NAT8LQ8N9F0 302 aa10.15□□□□□ -0.79
SYNE1-230ENST00000495090 ZSWIM2Q8NEG5 633 aa10.15□□□□□ -0.79
SYNE1-230ENST00000495090 SLC35B2Q8TB61 432 aa10.15□□□□□ -0.79
SYNE1-230ENST00000495090 FAM172AQ8WUF8 416 aa10.15□□□□□ -0.79
SYNE1-230ENST00000495090 CPA5Q8WXQ8 436 aa10.15□□□□□ -0.79
SYNE1-230ENST00000495090 JADE3Q92613 823 aa10.15□□□□□ -0.79
SYNE1-230ENST00000495090 MTBPQ96DY7 904 aa10.15□□□□□ -0.79
SYNE1-230ENST00000495090 CYTH2Q99418 400 aa10.15□□□□□ -0.79
SYNE1-230ENST00000495090 DDX50Q9BQ39 737 aaKnown RBP10.15□□□□□ -0.79
SYNE1-230ENST00000495090 ZCWPW1Q9H0M4 648 aa10.15□□□□□ -0.79
SYNE1-230ENST00000495090 PTTG2Q9NZH5 202 aa10.15□□□□□ -0.79
SYNE1-230ENST00000495090 SLC7A8Q9UHI5 535 aa10.15□□□□□ -0.79
SYNE1-230ENST00000495090 EFR3BQ9Y2G0 817 aa10.15□□□□□ -0.79
SYNE1-230ENST00000495090 SEC23IPQ9Y6Y8 1000 aaKnown RBP10.15□□□□□ -0.79
SYNE1-230ENST00000495090 LTBP1Q14766 1721 aa10.14□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms