RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 ERP27Q96DN0 273 aa17.43■□□□□ 0.38
CCDC88B-210ENST00000494566 PITPNM3Q9BZ71 974 aa17.43■□□□□ 0.38
CCDC88B-210ENST00000494566 ASCC2Q9H1I8 757 aaPredicted RBP17.43■□□□□ 0.38
CCDC88B-210ENST00000494566 VPS37BQ9H9H4 285 aa17.43■□□□□ 0.38
CCDC88B-210ENST00000494566 PARVAQ9NVD7 372 aa17.43■□□□□ 0.38
CCDC88B-210ENST00000494566 WHRNQ9P202 907 aa17.43■□□□□ 0.38
CCDC88B-210ENST00000494566 TTC4O95801 387 aa17.43■□□□□ 0.38
CCDC88B-210ENST00000494566 CD19P15391 556 aa17.43■□□□□ 0.38
CCDC88B-210ENST00000494566 MMP8P22894 467 aa17.43■□□□□ 0.38
CCDC88B-210ENST00000494566 NRLP54845 237 aa17.43■□□□□ 0.38
CCDC88B-210ENST00000494566 NFX1Q12986 1120 aaKnown RBP17.43■□□□□ 0.38
CCDC88B-210ENST00000494566 TRPC3Q13507 836 aa17.43■□□□□ 0.38
CCDC88B-210ENST00000494566 KCNT1Q5JUK3 1230 aa17.43■□□□□ 0.38
CCDC88B-210ENST00000494566 RFX8Q6ZV50 586 aa17.43■□□□□ 0.38
CCDC88B-210ENST00000494566 DPH6Q7L8W6 267 aa17.43■□□□□ 0.38
CCDC88B-210ENST00000494566 ECHDC2Q86YB7 292 aa17.43■□□□□ 0.38
CCDC88B-210ENST00000494566 TMEM134Q9H6X4 195 aa17.43■□□□□ 0.38
CCDC88B-210ENST00000494566 NKIRAS1Q9NYS0 192 aa17.43■□□□□ 0.38
CCDC88B-210ENST00000494566 CBX6O95503 412 aa17.42■□□□□ 0.38
CCDC88B-210ENST00000494566 CXCL8P10145 99 aa17.42■□□□□ 0.38
CCDC88B-210ENST00000494566 EDNRBP24530 442 aa17.42■□□□□ 0.38
CCDC88B-210ENST00000494566 COPS2P61201 443 aa17.42■□□□□ 0.38
CCDC88B-210ENST00000494566 DNAJC24Q6P3W2 148 aa17.42■□□□□ 0.38
CCDC88B-210ENST00000494566 VSIG1Q86XK7 387 aa17.42■□□□□ 0.38
CCDC88B-210ENST00000494566 MIEF2Q96C03 454 aa17.42■□□□□ 0.38
CCDC88B-210ENST00000494566 FGD4Q96M96 766 aa17.42■□□□□ 0.38
CCDC88B-210ENST00000494566 SPATA33Q96N06 139 aa17.42■□□□□ 0.38
CCDC88B-210ENST00000494566 GPR20Q99678 358 aa17.42■□□□□ 0.38
CCDC88B-210ENST00000494566 DCTN4Q9UJW0 460 aa17.42■□□□□ 0.38
CCDC88B-210ENST00000494566 PIK3R2O00459 728 aa17.42■□□□□ 0.38
CCDC88B-210ENST00000494566 IQCF3P0C7M6 154 aa17.42■□□□□ 0.38
CCDC88B-210ENST00000494566 TMEM191BP0C7N4 346 aa17.42■□□□□ 0.38
CCDC88B-210ENST00000494566 GHRP10912 638 aa17.42■□□□□ 0.38
CCDC88B-210ENST00000494566 ITIH2P19823 946 aa17.42■□□□□ 0.38
CCDC88B-210ENST00000494566 GBP1P32455 592 aa17.42■□□□□ 0.38
CCDC88B-210ENST00000494566 ITIH4Q14624 930 aa17.42■□□□□ 0.38
CCDC88B-210ENST00000494566 MAPK6Q16659 721 aa17.42■□□□□ 0.38
CCDC88B-210ENST00000494566 ZNF568Q3ZCX4 644 aa17.42■□□□□ 0.38
CCDC88B-210ENST00000494566 ANKLE1Q8NAG6 615 aa17.42■□□□□ 0.38
CCDC88B-210ENST00000494566 C3orf20Q8ND61 904 aa17.42■□□□□ 0.38
CCDC88B-210ENST00000494566 RUNDC3BQ96NL0 473 aa17.42■□□□□ 0.38
CCDC88B-210ENST00000494566 PLCD4Q9BRC7 762 aa17.42■□□□□ 0.38
CCDC88B-210ENST00000494566 ZMYND8Q9ULU4 1186 aaPredicted RBP17.42■□□□□ 0.38
CCDC88B-210ENST00000494566 SIP14410 1827 aa17.42■□□□□ 0.38
CCDC88B-210ENST00000494566 LTBP3Q9NS15 1303 aa17.42■□□□□ 0.38
CCDC88B-210ENST00000494566 SRRM3A6NNA2 597 aaPredicted RBP17.41■□□□□ 0.38
CCDC88B-210ENST00000494566 SOCS7O14512 581 aa17.41■□□□□ 0.38
CCDC88B-210ENST00000494566 PSTPIP1O43586 416 aa17.41■□□□□ 0.38
CCDC88B-210ENST00000494566 CNMDO75829 334 aa17.41■□□□□ 0.38
CCDC88B-210ENST00000494566 SLC8A1P32418 973 aa17.41■□□□□ 0.38
CCDC88B-210ENST00000494566 ZNF132P52740 706 aa17.41■□□□□ 0.38
CCDC88B-210ENST00000494566 TTLL12Q14166 644 aaPredicted RBP17.41■□□□□ 0.38
CCDC88B-210ENST00000494566 EFTUD2Q15029 972 aaKnown RBP eCLIP17.41■□□□□ 0.386e-8■■■■□ 22.8
CCDC88B-210ENST00000494566 ZNF699Q32M78 642 aa17.41■□□□□ 0.38
CCDC88B-210ENST00000494566 DENND1BQ6P3S1 775 aa17.41■□□□□ 0.38
CCDC88B-210ENST00000494566 RBM15Q96T37 977 aaKnown RBP eCLIP17.41■□□□□ 0.384e-6■■■□□ 14.7
CCDC88B-210ENST00000494566 NKX1-2Q9UD57 310 aaPredicted RBP17.41■□□□□ 0.38
CCDC88B-210ENST00000494566 ZNF148Q9UQR1 794 aa17.41■□□□□ 0.38
CCDC88B-210ENST00000494566 SCINQ9Y6U3 715 aa17.41■□□□□ 0.38
CCDC88B-210ENST00000494566 A0A1W2PPM1 405 aa17.41■□□□□ 0.38
CCDC88B-210ENST00000494566 OGTO15294 1046 aa17.41■□□□□ 0.38
CCDC88B-210ENST00000494566 HOXC6P09630 235 aa17.41■□□□□ 0.38
CCDC88B-210ENST00000494566 C1QBPQ07021 282 aaKnown RBP17.41■□□□□ 0.38
CCDC88B-210ENST00000494566 PKN2Q16513 984 aaKnown RBP17.41■□□□□ 0.38
CCDC88B-210ENST00000494566 DUOXA2Q1HG44 320 aa17.41■□□□□ 0.38
CCDC88B-210ENST00000494566 TRIM72Q6ZMU5 477 aa17.41■□□□□ 0.38
CCDC88B-210ENST00000494566 WDR49Q8IV35 697 aa17.41■□□□□ 0.38
CCDC88B-210ENST00000494566 KATNAL2Q8IYT4 538 aa17.41■□□□□ 0.38
CCDC88B-210ENST00000494566 EMC1Q8N766 993 aa17.41■□□□□ 0.38
CCDC88B-210ENST00000494566 SLCO2A1Q92959 643 aa17.41■□□□□ 0.38
CCDC88B-210ENST00000494566 ZNF570Q96NI8 536 aa17.41■□□□□ 0.38
CCDC88B-210ENST00000494566 MYLK2Q9H1R3 596 aa17.41■□□□□ 0.38
CCDC88B-210ENST00000494566 ZWILCHQ9H900 591 aa17.41■□□□□ 0.38
CCDC88B-210ENST00000494566 HMGXB4Q9UGU5 601 aa17.41■□□□□ 0.38
CCDC88B-210ENST00000494566 CYTH4Q9UIA0 394 aa17.41■□□□□ 0.38
CCDC88B-210ENST00000494566 EXOC1LA0A1B0GW35 172 aa17.41■□□□□ 0.38
CCDC88B-210ENST00000494566 LRRD1A4D1F6 860 aa17.41■□□□□ 0.38
CCDC88B-210ENST00000494566 TMEM191CA6NGB0 347 aa17.41■□□□□ 0.38
CCDC88B-210ENST00000494566 ABLIM1O14639 778 aa17.41■□□□□ 0.38
CCDC88B-210ENST00000494566 WDR4P57081 412 aaKnown RBP17.41■□□□□ 0.38
CCDC88B-210ENST00000494566 GPC2Q8N158 579 aa17.41■□□□□ 0.38
CCDC88B-210ENST00000494566 UBR7Q8N806 425 aa17.41■□□□□ 0.38
CCDC88B-210ENST00000494566 SLITRK1Q96PX8 696 aa17.41■□□□□ 0.38
CCDC88B-210ENST00000494566 NIF3L1Q9GZT8 377 aa17.41■□□□□ 0.38
CCDC88B-210ENST00000494566 CNTN6Q9UQ52 1028 aa17.41■□□□□ 0.38
CCDC88B-210ENST00000494566 NEU2Q9Y3R4 380 aa17.41■□□□□ 0.38
CCDC88B-210ENST00000494566 MSH2P43246 934 aa17.4■□□□□ 0.38
CCDC88B-210ENST00000494566 ZPBP2Q6X784 338 aa17.4■□□□□ 0.38
CCDC88B-210ENST00000494566 TRMT10CQ7L0Y3 403 aaKnown RBP17.4■□□□□ 0.38
CCDC88B-210ENST00000494566 JOSD2Q8TAC2 188 aa17.4■□□□□ 0.38
CCDC88B-210ENST00000494566 GRK7Q8WTQ7 553 aa17.4■□□□□ 0.38
CCDC88B-210ENST00000494566 PPP1R13LQ8WUF5 828 aa17.4■□□□□ 0.38
CCDC88B-210ENST00000494566 TRAIPQ9BWF2 469 aa17.4■□□□□ 0.38
CCDC88B-210ENST00000494566 STMN4Q9H169 189 aaPredicted RBP17.4■□□□□ 0.38
CCDC88B-210ENST00000494566 KLHL14Q9P2G3 628 aa17.4■□□□□ 0.38
CCDC88B-210ENST00000494566 CPSF3Q9UKF6 684 aaKnown RBP17.4■□□□□ 0.38
CCDC88B-210ENST00000494566 GRID1Q9ULK0 1009 aa17.4■□□□□ 0.38
CCDC88B-210ENST00000494566 BRCA2P51587 3418 aa17.4■□□□□ 0.38
CCDC88B-210ENST00000494566 C2orf71A6NGG8 1288 aa17.4■□□□□ 0.38
CCDC88B-210ENST00000494566 PDHA1P08559 390 aa17.4■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms