RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 P4HA1P13674 534 aa11.29□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 SERPINB6P35237 376 aa11.29□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 KCNJ2P63252 427 aa11.29□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 TNFAIP2Q03169 654 aa11.29□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 MAPK7Q13164 816 aa11.29□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 CLUL1Q15846 466 aa11.29□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 HYIQ5T013 277 aa11.29□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 LBX2Q6XYB7 198 aa11.29□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 SRRM1Q8IYB3 904 aaKnown RBP11.29□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 TMEM35BQ8NCS4 154 aa11.29□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 DNAJB3Q8WWF6 145 aa11.29□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 RILPQ96NA2 401 aa11.29□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 FAM129AQ9BZQ8 928 aa11.29□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 TTYH3Q9C0H2 523 aa11.29□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 PCDHA2Q9Y5H9 948 aa11.29□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 CENPFP49454 3210 aa11.29□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 C4AP0C0L4 1744 aa11.29□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 CCDC78A2IDD5 438 aa11.28□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 TTLL13PA6NNM8 815 aa11.28□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 SAT1P21673 171 aa11.28□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 ADSSP30520 456 aa11.28□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 C1orf228Q6PIY5 440 aa11.28□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 USP38Q8NB14 1042 aa11.28□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 CARD9Q9H257 536 aa11.28□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 SNX25Q9H3E2 840 aa11.28□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 AIPL1Q9NZN9 384 aa11.28□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 CCDC88AQ3V6T2 1871 aa11.28□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 PASKQ96RG2 1323 aa11.28□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 NOL3O60936 208 aaKnown RBP11.28□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 PGK1P00558 417 aa11.28□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 RNASELQ05823 741 aaKnown RBP11.28□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 QPCTQ16769 361 aa11.28□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 BBS9Q3SYG4 887 aa11.28□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 MFSD4BQ5TF39 518 aa11.28□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 ACOT1Q86TX2 421 aa11.28□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 TRIM42Q8IWZ5 723 aa11.28□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 ACAP3Q96P50 834 aa11.28□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.28□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 DBR1Q9UK59 544 aaKnown RBP11.28□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 SLC25A27O95847 323 aa11.28□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 CST3P01034 146 aaPredicted RBP11.28□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 CETPP11597 493 aa11.28□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 ABCD1P33897 745 aa11.28□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 ZBTB17Q13105 803 aa11.28□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 CUL2Q13617 745 aa11.28□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 TMED2Q15363 201 aa11.28□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 FAM117BQ6P1L5 589 aa11.28□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 CCDC110Q8TBZ0 833 aa11.28□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 TSPYL2Q9H2G4 693 aaPredicted RBP11.28□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 GPATCH2LQ9NWQ4 482 aa11.28□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 ANKRD36CQ5JPF3 1778 aa11.28□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 RTN3O95197 1032 aaPredicted RBP11.27□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 RALAP11233 206 aa11.27□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 PRLRP16471 622 aa11.27□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 CACNA2D1P54289 1103 aa11.27□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 ARMCX6Q7L4S7 300 aa11.27□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 MAB21L3Q8N8X9 362 aa11.27□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 PIP4K2CQ8TBX8 421 aa11.27□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 KREMEN1Q96MU8 473 aa11.27□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 CACNG4Q9UBN1 327 aa11.27□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 ZFP69BQ9UJL9 534 aa11.27□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 MYO7AQ13402 2215 aa11.27□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 TOM1L1O75674 476 aa11.27□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 FARP2O94887 1054 aaPredicted RBP11.27□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 STAMBPO95630 424 aa11.27□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 AGTP01019 485 aa11.27□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 STAG3L1P0CL83 205 aa11.27□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 YY1P25490 414 aa11.27□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 VHLP40337 213 aa11.27□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 IRX4P78413 519 aa11.27□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 NME3Q13232 169 aa11.27□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 MXD4Q14582 209 aaPredicted RBP11.27□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 CCDC125Q86Z20 511 aa11.27□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 MAP4K3Q8IVH8 894 aa11.27□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 MRPL47Q9HD33 250 aaKnown RBP11.27□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 CISHQ9NSE2 258 aa11.27□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 ABCF3Q9NUQ8 709 aa11.27□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 SNTG2Q9NY99 539 aa11.27□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 PDP2Q9P2J9 529 aa11.27□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 ANAPC5Q9UJX4 755 aa11.27□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 FNDC3AQ9Y2H6 1198 aaKnown RBP11.27□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 PCDHB2Q9Y5E7 798 aa11.27□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 MAGEA13PA6NCF6 341 aa11.27□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 TRPA1O75762 1119 aa11.27□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 RGS20O76081 388 aa11.27□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 ACAT1P24752 427 aaKnown RBP11.27□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 HSPA9P38646 679 aaKnown RBP11.27□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 GRIK3Q13003 919 aa11.27□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 FAXCQ5TGI0 409 aa11.27□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 TDRD10Q5VZ19 366 aaKnown RBP11.27□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 TMEM192Q8IY95 271 aa11.27□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 REPS2Q8NFH8 660 aa11.27□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 EPS8L1Q8TE68 723 aa11.27□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 Q9H521 79 aa11.27□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 THEGQ9P2T0 379 aa11.27□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 RBPJLQ9UBG7 517 aa11.27□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 NR2E1Q9Y466 385 aa11.27□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 C11orf97A0A1B0GVM6 126 aaPredicted RBP11.26□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 BTBD19C9JJ37 291 aa11.26□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 HBP1O60381 514 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 134.7 ms