RNA–Protein interactions for RNA: ENST00000489212.2

LIME1-207, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 5

Gene LIME1, Length 559 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-207ENST00000489212 FRMD4BQ9Y2L6 1034 aa22.67■■□□□ 1.22
LIME1-207ENST00000489212 PCDHA5Q9Y5H7 936 aa22.67■■□□□ 1.22
LIME1-207ENST00000489212 CACNA1HO95180 2353 aa22.67■■□□□ 1.22
LIME1-207ENST00000489212 PHACTR2O75167 634 aa22.66■■□□□ 1.22
LIME1-207ENST00000489212 CYP2F1P24903 491 aa22.66■■□□□ 1.22
LIME1-207ENST00000489212 AP3M2P53677 418 aa22.66■■□□□ 1.22
LIME1-207ENST00000489212 PSMC1P62191 440 aaKnown RBP22.66■■□□□ 1.22
LIME1-207ENST00000489212 BIRC3Q13489 604 aa22.66■■□□□ 1.22
LIME1-207ENST00000489212 SDHAF4Q5VUM1 108 aa22.66■■□□□ 1.22
LIME1-207ENST00000489212 STKLD1Q8NE28 680 aa22.66■■□□□ 1.22
LIME1-207ENST00000489212 PRSS33Q8NF86 280 aa22.66■■□□□ 1.22
LIME1-207ENST00000489212 FLCNQ8NFG4 579 aa22.66■■□□□ 1.22
LIME1-207ENST00000489212 TMC2Q8TDI7 906 aa22.66■■□□□ 1.22
LIME1-207ENST00000489212 ELSPBP1Q96BH3 223 aa22.66■■□□□ 1.22
LIME1-207ENST00000489212 SYT15Q9BQS2 421 aa22.66■■□□□ 1.22
LIME1-207ENST00000489212 IL21Q9HBE4 155 aa22.66■■□□□ 1.22
LIME1-207ENST00000489212 CRTAC1Q9NQ79 661 aa22.66■■□□□ 1.22
LIME1-207ENST00000489212 NCANO14594 1321 aa22.65■■□□□ 1.22
LIME1-207ENST00000489212 TACC1O75410 805 aa22.65■■□□□ 1.22
LIME1-207ENST00000489212 PDGFRBP09619 1106 aa22.65■■□□□ 1.22
LIME1-207ENST00000489212 GABRR2P28476 465 aa22.65■■□□□ 1.22
LIME1-207ENST00000489212 ATICP31939 592 aa22.65■■□□□ 1.22
LIME1-207ENST00000489212 NCOA4Q13772 614 aa22.65■■□□□ 1.22
LIME1-207ENST00000489212 VEPH1Q14D04 833 aa22.65■■□□□ 1.22
LIME1-207ENST00000489212 ASTLQ6HA08 431 aaPredicted RBP22.65■■□□□ 1.22
LIME1-207ENST00000489212 ZSCAN18Q8TBC5 510 aaPredicted RBP22.65■■□□□ 1.22
LIME1-207ENST00000489212 SMARCD2Q92925 531 aa22.65■■□□□ 1.22
LIME1-207ENST00000489212 SYAP1Q96A49 352 aaPredicted RBP22.65■■□□□ 1.22
LIME1-207ENST00000489212 GSDMAQ96QA5 445 aa22.65■■□□□ 1.22
LIME1-207ENST00000489212 MKNK1Q9BUB5 465 aa22.65■■□□□ 1.22
LIME1-207ENST00000489212 KCNH6Q9H252 994 aa22.65■■□□□ 1.22
LIME1-207ENST00000489212 VRTNQ9H8Y1 702 aa22.65■■□□□ 1.22
LIME1-207ENST00000489212 ABCB6Q9NP58 842 aa22.65■■□□□ 1.22
LIME1-207ENST00000489212 RMND1Q9NWS8 449 aa22.65■■□□□ 1.22
LIME1-207ENST00000489212 NXF1Q9UBU9 619 aaKnown RBP22.65■■□□□ 1.22
LIME1-207ENST00000489212 CDH9Q9ULB4 789 aa22.65■■□□□ 1.22
LIME1-207ENST00000489212 MAPK13O15264 365 aa22.64■■□□□ 1.21
LIME1-207ENST00000489212 PI15O43692 258 aa22.64■■□□□ 1.21
LIME1-207ENST00000489212 HMGA1P17096 107 aaKnown RBP22.64■■□□□ 1.21
LIME1-207ENST00000489212 VIPR2P41587 438 aa22.64■■□□□ 1.21
LIME1-207ENST00000489212 PRCPP42785 496 aa22.64■■□□□ 1.21
LIME1-207ENST00000489212 TNNC1P63316 161 aa22.64■■□□□ 1.21
LIME1-207ENST00000489212 ADAM9Q13443 819 aa22.64■■□□□ 1.21
LIME1-207ENST00000489212 DDR2Q16832 855 aa22.64■■□□□ 1.21
LIME1-207ENST00000489212 ZACNQ401N2 412 aa22.64■■□□□ 1.21
LIME1-207ENST00000489212 ZNF658Q5TYW1 1059 aaPredicted RBP22.64■■□□□ 1.21
LIME1-207ENST00000489212 ATXN3LQ9H3M9 355 aa22.64■■□□□ 1.21
LIME1-207ENST00000489212 SLITRK6Q9H5Y7 841 aa22.64■■□□□ 1.21
LIME1-207ENST00000489212 ZFP14Q9HCL3 533 aa22.64■■□□□ 1.21
LIME1-207ENST00000489212 ARHGEF3Q9NR81 526 aa22.64■■□□□ 1.21
LIME1-207ENST00000489212 COL4A3Q01955 1670 aa22.64■■□□□ 1.21
LIME1-207ENST00000489212 PTPRDP23468 1912 aa22.63■■□□□ 1.21
LIME1-207ENST00000489212 SMC2O95347 1197 aa22.63■■□□□ 1.21
LIME1-207ENST00000489212 FAM163BP0C2L3 166 aa22.63■■□□□ 1.21
LIME1-207ENST00000489212 GNL1P36915 607 aaPredicted RBP22.63■■□□□ 1.21
LIME1-207ENST00000489212 CLCN5P51795 746 aa22.63■■□□□ 1.21
LIME1-207ENST00000489212 VAMP7P51809 220 aa22.63■■□□□ 1.21
LIME1-207ENST00000489212 GRM2Q14416 872 aa22.63■■□□□ 1.21
LIME1-207ENST00000489212 ZNF699Q32M78 642 aa22.63■■□□□ 1.21
LIME1-207ENST00000489212 CFAP221Q4G0U5 840 aa22.63■■□□□ 1.21
LIME1-207ENST00000489212 SV2AQ7L0J3 742 aa22.63■■□□□ 1.21
LIME1-207ENST00000489212 SPATA2LQ8IUW3 424 aaPredicted RBP22.63■■□□□ 1.21
LIME1-207ENST00000489212 FAM186BQ8IYM0 893 aa22.63■■□□□ 1.21
LIME1-207ENST00000489212 SMARCE1Q969G3 411 aa22.63■■□□□ 1.21
LIME1-207ENST00000489212 MYLPFQ96A32 169 aa22.63■■□□□ 1.21
LIME1-207ENST00000489212 RSPRY1Q96DX4 576 aa22.63■■□□□ 1.21
LIME1-207ENST00000489212 EEF2KMTQ96G04 330 aa22.63■■□□□ 1.21
LIME1-207ENST00000489212 GPR88Q9GZN0 384 aa22.63■■□□□ 1.21
LIME1-207ENST00000489212 SNX25Q9H3E2 840 aa22.63■■□□□ 1.21
LIME1-207ENST00000489212 SMYD3Q9H7B4 428 aa22.63■■□□□ 1.21
LIME1-207ENST00000489212 TRPV4Q9HBA0 871 aa22.63■■□□□ 1.21
LIME1-207ENST00000489212 IKBKBO14920 756 aa22.62■■□□□ 1.21
LIME1-207ENST00000489212 TRIM49P0CI25 452 aa22.62■■□□□ 1.21
LIME1-207ENST00000489212 TRIM49CP0CI26 452 aa22.62■■□□□ 1.21
LIME1-207ENST00000489212 RPL13P26373 211 aaKnown RBP22.62■■□□□ 1.21
LIME1-207ENST00000489212 PLA2G5P39877 138 aa22.62■■□□□ 1.21
LIME1-207ENST00000489212 CDH8P55286 799 aa22.62■■□□□ 1.21
LIME1-207ENST00000489212 CYP4F8P98187 520 aa22.62■■□□□ 1.21
LIME1-207ENST00000489212 TAF12Q16514 161 aa22.62■■□□□ 1.21
LIME1-207ENST00000489212 EDRF1Q3B7T1 1238 aa22.62■■□□□ 1.21
LIME1-207ENST00000489212 COBLL1Q53SF7 1204 aa22.62■■□□□ 1.21
LIME1-207ENST00000489212 VITQ6UXI7 678 aa22.62■■□□□ 1.21
LIME1-207ENST00000489212 TMEM150AQ86TG1 271 aa22.62■■□□□ 1.21
LIME1-207ENST00000489212 GPIHBP1Q8IV16 184 aa22.62■■□□□ 1.21
LIME1-207ENST00000489212 ELOA2Q8IYF1 753 aaPredicted RBP22.62■■□□□ 1.21
LIME1-207ENST00000489212 OR6B3Q8NGW1 331 aa22.62■■□□□ 1.21
LIME1-207ENST00000489212 FUBP3Q96I24 572 aaKnown RBP eCLIP22.62■■□□□ 1.21
LIME1-207ENST00000489212 DPEP3Q9H4B8 488 aa22.62■■□□□ 1.21
LIME1-207ENST00000489212 TBC1D17Q9HA65 648 aa22.62■■□□□ 1.21
LIME1-207ENST00000489212 DENND4CQ5VZ89 1909 aa22.61■■□□□ 1.21
LIME1-207ENST00000489212 FGF19O95750 216 aa22.61■■□□□ 1.21
LIME1-207ENST00000489212 AOC1P19801 751 aa22.61■■□□□ 1.21
LIME1-207ENST00000489212 PSMC2P35998 433 aaKnown RBP22.61■■□□□ 1.21
LIME1-207ENST00000489212 RAP1GAPP47736 663 aa22.61■■□□□ 1.21
LIME1-207ENST00000489212 PPP3CAQ08209 521 aa22.61■■□□□ 1.21
LIME1-207ENST00000489212 TCF15Q12870 199 aa22.61■■□□□ 1.21
LIME1-207ENST00000489212 ZNF667Q5HYK9 610 aa22.61■■□□□ 1.21
LIME1-207ENST00000489212 GPR158Q5T848 1215 aa22.61■■□□□ 1.21
LIME1-207ENST00000489212 INTS8Q75QN2 995 aaKnown RBP22.61■■□□□ 1.21
LIME1-207ENST00000489212 MYCBPAPQ8TBZ2 947 aa22.61■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms