RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 LOC100653049A0A140TA62 436 aa17.13■□□□□ 0.33
COL7A1-210ENST00000487017 KRT34O76011 436 aa17.13■□□□□ 0.33
COL7A1-210ENST00000487017 OCM2P0CE71 109 aa17.13■□□□□ 0.33
COL7A1-210ENST00000487017 OCMP0CE72 109 aaPredicted RBP17.13■□□□□ 0.33
COL7A1-210ENST00000487017 ATXN3P54252 364 aaPredicted RBP17.13■□□□□ 0.33
COL7A1-210ENST00000487017 TTC23LQ6PF05 361 aa17.13■□□□□ 0.33
COL7A1-210ENST00000487017 GPRASP2Q96D09 838 aa17.13■□□□□ 0.33
COL7A1-210ENST00000487017 HEY2Q9UBP5 337 aa17.13■□□□□ 0.33
COL7A1-210ENST00000487017 H0Y626 953 aa17.13■□□□□ 0.33
COL7A1-210ENST00000487017 TRIM16O95361 564 aa17.13■□□□□ 0.33
COL7A1-210ENST00000487017 SH3KBP1Q96B97 665 aa17.13■□□□□ 0.33
COL7A1-210ENST00000487017 TRIM45Q9H8W5 580 aaPredicted RBP17.13■□□□□ 0.33
COL7A1-210ENST00000487017 TCN1P20061 433 aaPredicted RBP17.13■□□□□ 0.33
COL7A1-210ENST00000487017 TBX2Q13207 712 aaPredicted RBP17.13■□□□□ 0.33
COL7A1-210ENST00000487017 FBXO25Q8TCJ0 367 aa17.13■□□□□ 0.33
COL7A1-210ENST00000487017 CYGBQ8WWM9 190 aa17.13■□□□□ 0.33
COL7A1-210ENST00000487017 TAAR1Q96RJ0 339 aa17.13■□□□□ 0.33
COL7A1-210ENST00000487017 OSGEPQ9NPF4 335 aa17.13■□□□□ 0.33
COL7A1-210ENST00000487017 NEK2P51955 445 aa17.13■□□□□ 0.33
COL7A1-210ENST00000487017 PMS1P54277 932 aaKnown RBP17.13■□□□□ 0.33
COL7A1-210ENST00000487017 CBWD2Q8IUF1 395 aa17.13■□□□□ 0.33
COL7A1-210ENST00000487017 FBXO36Q8NEA4 188 aa17.13■□□□□ 0.33
COL7A1-210ENST00000487017 TEKT4Q8WW24 435 aa17.13■□□□□ 0.33
COL7A1-210ENST00000487017 OTULINQ96BN8 352 aa17.13■□□□□ 0.33
COL7A1-210ENST00000487017 ZNF669Q96BR6 464 aaPredicted RBP17.13■□□□□ 0.33
COL7A1-210ENST00000487017 GPBP1L1Q9HC44 474 aaPredicted RBP17.13■□□□□ 0.33
COL7A1-210ENST00000487017 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP17.13■□□□□ 0.33
COL7A1-210ENST00000487017 HAO1Q9UJM8 370 aa17.13■□□□□ 0.33
COL7A1-210ENST00000487017 SLIT1O75093 1534 aa17.13■□□□□ 0.33
COL7A1-210ENST00000487017 MTSS1O43312 755 aa17.12■□□□□ 0.33
COL7A1-210ENST00000487017 SREBF1P36956 1147 aa17.12■□□□□ 0.33
COL7A1-210ENST00000487017 RAD51Q06609 339 aa17.12■□□□□ 0.33
COL7A1-210ENST00000487017 SLC7A14Q8TBB6 771 aa17.12■□□□□ 0.33
COL7A1-210ENST00000487017 HPDLQ96IR7 371 aa17.12■□□□□ 0.33
COL7A1-210ENST00000487017 ZNF197O14709 1029 aa17.12■□□□□ 0.33
COL7A1-210ENST00000487017 ZC3H11AO75152 810 aaKnown RBP eCLIP17.12■□□□□ 0.33
COL7A1-210ENST00000487017 GH1P01241 217 aa17.12■□□□□ 0.33
COL7A1-210ENST00000487017 FDFT1P37268 417 aa17.12■□□□□ 0.33
COL7A1-210ENST00000487017 KCNMA1Q12791 1236 aa17.12■□□□□ 0.33
COL7A1-210ENST00000487017 SV2CQ496J9 727 aa17.12■□□□□ 0.33
COL7A1-210ENST00000487017 CLEC4FQ8N1N0 589 aa17.12■□□□□ 0.33
COL7A1-210ENST00000487017 MAP3K20Q9NYL2 800 aaKnown RBP17.12■□□□□ 0.33
COL7A1-210ENST00000487017 DPYSL4O14531 572 aa17.12■□□□□ 0.33
COL7A1-210ENST00000487017 PTGER2P43116 358 aa17.12■□□□□ 0.33
COL7A1-210ENST00000487017 RAP1GDS1P52306 607 aa17.12■□□□□ 0.33
COL7A1-210ENST00000487017 RCN1Q15293 331 aa17.12■□□□□ 0.33
COL7A1-210ENST00000487017 DCAF6Q58WW2 860 aa17.12■□□□□ 0.33
COL7A1-210ENST00000487017 C6orf10Q5SRN2 563 aa17.12■□□□□ 0.33
COL7A1-210ENST00000487017 ELMSAN1Q6PJG2 1045 aa17.12■□□□□ 0.33
COL7A1-210ENST00000487017 MICALL2Q8IY33 904 aa17.12■□□□□ 0.33
COL7A1-210ENST00000487017 LRRC71Q8N4P6 559 aa17.12■□□□□ 0.33
COL7A1-210ENST00000487017 TFB1MQ8WVM0 346 aaKnown RBP17.12■□□□□ 0.33
COL7A1-210ENST00000487017 DGKIO75912 1065 aa17.12■□□□□ 0.33
COL7A1-210ENST00000487017 FGFR2P21802 821 aa17.12■□□□□ 0.33
COL7A1-210ENST00000487017 MAP3K10Q02779 954 aa17.12■□□□□ 0.33
COL7A1-210ENST00000487017 Q4G0T1 1027 aa17.12■□□□□ 0.33
COL7A1-210ENST00000487017 LRRC6Q86X45 466 aa17.12■□□□□ 0.33
COL7A1-210ENST00000487017 LRRN4CLQ8ND94 238 aa17.12■□□□□ 0.33
COL7A1-210ENST00000487017 SUPT3HO75486 399 aa17.11■□□□□ 0.33
COL7A1-210ENST00000487017 RARBP10826 455 aa17.11■□□□□ 0.33
COL7A1-210ENST00000487017 DSG1Q02413 1049 aa17.11■□□□□ 0.33
COL7A1-210ENST00000487017 TFDP3Q5H9I0 405 aa17.11■□□□□ 0.33
COL7A1-210ENST00000487017 NAPEPLDQ6IQ20 393 aa17.11■□□□□ 0.33
COL7A1-210ENST00000487017 EFCAB12Q6NXP0 572 aa17.11■□□□□ 0.33
COL7A1-210ENST00000487017 DDX50Q9BQ39 737 aaKnown RBP17.11■□□□□ 0.33
COL7A1-210ENST00000487017 BLOC1S6Q9UL45 172 aa17.11■□□□□ 0.33
COL7A1-210ENST00000487017 TBC1D4O60343 1298 aa17.11■□□□□ 0.33
COL7A1-210ENST00000487017 NDUFS3O75489 264 aa17.11■□□□□ 0.33
COL7A1-210ENST00000487017 CDH2P19022 906 aaPredicted RBP17.11■□□□□ 0.33
COL7A1-210ENST00000487017 PABPC5Q96DU9 382 aaKnown RBP17.11■□□□□ 0.33
COL7A1-210ENST00000487017 GJD4Q96KN9 370 aaPredicted RBP17.11■□□□□ 0.33
COL7A1-210ENST00000487017 GID8Q9NWU2 228 aa17.11■□□□□ 0.33
COL7A1-210ENST00000487017 PDP2Q9P2J9 529 aa17.11■□□□□ 0.33
COL7A1-210ENST00000487017 CNTNAP4Q9C0A0 1308 aa17.11■□□□□ 0.33
COL7A1-210ENST00000487017 MAGEA13PA6NCF6 341 aa17.11■□□□□ 0.33
COL7A1-210ENST00000487017 PJA2O43164 708 aa17.11■□□□□ 0.33
COL7A1-210ENST00000487017 APOA1P02647 267 aa17.11■□□□□ 0.33
COL7A1-210ENST00000487017 IFNEQ86WN2 208 aa17.11■□□□□ 0.33
COL7A1-210ENST00000487017 RFWD2Q8NHY2 731 aa17.11■□□□□ 0.33
COL7A1-210ENST00000487017 CAMSAP3Q9P1Y5 1249 aaPredicted RBP17.11■□□□□ 0.33
COL7A1-210ENST00000487017 SLC39A10Q9ULF5 831 aa17.11■□□□□ 0.33
COL7A1-210ENST00000487017 GLRA3O75311 464 aa17.11■□□□□ 0.33
COL7A1-210ENST00000487017 DEAF1O75398 565 aaPredicted RBP17.11■□□□□ 0.33
COL7A1-210ENST00000487017 CATSPERBQ9H7T0 1116 aa17.11■□□□□ 0.33
COL7A1-210ENST00000487017 AKAP3O75969 853 aa17.11■□□□□ 0.33
COL7A1-210ENST00000487017 RPS6P62753 249 aaKnown RBP17.11■□□□□ 0.33
COL7A1-210ENST00000487017 THEMIS2Q5TEJ8 643 aa17.11■□□□□ 0.33
COL7A1-210ENST00000487017 IPMKQ8NFU5 416 aa17.11■□□□□ 0.33
COL7A1-210ENST00000487017 ELP3Q9H9T3 547 aa17.11■□□□□ 0.33
COL7A1-210ENST00000487017 ZNF229Q9UJW7 825 aa17.11■□□□□ 0.33
COL7A1-210ENST00000487017 DIP2CQ9Y2E4 1556 aa17.1■□□□□ 0.33
COL7A1-210ENST00000487017 LRRIQ1Q96JM4 1722 aa17.1■□□□□ 0.33
COL7A1-210ENST00000487017 ICAM1P05362 532 aa17.1■□□□□ 0.33
COL7A1-210ENST00000487017 APOA4P06727 396 aa17.1■□□□□ 0.33
COL7A1-210ENST00000487017 KRT72Q14CN4 511 aa17.1■□□□□ 0.33
COL7A1-210ENST00000487017 PCSK7Q16549 785 aa17.1■□□□□ 0.33
COL7A1-210ENST00000487017 CCT7Q99832 543 aa17.1■□□□□ 0.33
COL7A1-210ENST00000487017 CBWD1Q9BRT8 395 aa17.1■□□□□ 0.33
COL7A1-210ENST00000487017 TRPC5OSA6NMA1 111 aa17.1■□□□□ 0.33
COL7A1-210ENST00000487017 ZNF263O14978 683 aa17.1■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms