RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 LLGL2Q6P1M3 1020 aa13.96□□□□□ -0.17
USP40-214ENST00000483519 CHSY1Q86X52 802 aa13.96□□□□□ -0.17
USP40-214ENST00000483519 CCNJLQ8IV13 435 aa13.96□□□□□ -0.17
USP40-214ENST00000483519 BANPQ8N9N5 519 aa13.96□□□□□ -0.17
USP40-214ENST00000483519 PYROXD1Q8WU10 500 aa13.96□□□□□ -0.17
USP40-214ENST00000483519 PCDH9Q9HC56 1237 aa13.96□□□□□ -0.17
USP40-214ENST00000483519 PSME4Q14997 1843 aa13.96□□□□□ -0.17
USP40-214ENST00000483519 SLC16A4O15374 487 aa13.96□□□□□ -0.18
USP40-214ENST00000483519 LYNP07948 512 aa13.96□□□□□ -0.18
USP40-214ENST00000483519 VIL1P09327 827 aaKnown RBP13.96□□□□□ -0.18
USP40-214ENST00000483519 GSTT1P30711 240 aa13.96□□□□□ -0.18
USP40-214ENST00000483519 RARRES1P49788 294 aa13.96□□□□□ -0.18
USP40-214ENST00000483519 GPX6P59796 221 aa13.96□□□□□ -0.18
USP40-214ENST00000483519 MCL1Q07820 350 aa13.96□□□□□ -0.18
USP40-214ENST00000483519 ABCB5Q2M3G0 1257 aa13.96□□□□□ -0.18
USP40-214ENST00000483519 TRIM72Q6ZMU5 477 aa13.96□□□□□ -0.18
USP40-214ENST00000483519 ANKMY2Q8IV38 441 aa13.96□□□□□ -0.18
USP40-214ENST00000483519 ZFPM1Q8IX07 1006 aa13.96□□□□□ -0.18
USP40-214ENST00000483519 B4GALNT2Q8NHY0 566 aa13.96□□□□□ -0.18
USP40-214ENST00000483519 EPAS1Q99814 870 aa13.96□□□□□ -0.18
USP40-214ENST00000483519 DHRS4Q9BTZ2 278 aa13.96□□□□□ -0.18
USP40-214ENST00000483519 ASCC2Q9H1I8 757 aaPredicted RBP13.96□□□□□ -0.18
USP40-214ENST00000483519 ACSS3Q9H6R3 686 aa13.96□□□□□ -0.18
USP40-214ENST00000483519 PCMTD2Q9NV79 361 aa13.96□□□□□ -0.18
USP40-214ENST00000483519 FER1L6Q2WGJ9 1857 aa13.95□□□□□ -0.18
USP40-214ENST00000483519 SIPA1L1O43166 1804 aa13.95□□□□□ -0.18
USP40-214ENST00000483519 SMAPO00193 183 aa13.95□□□□□ -0.18
USP40-214ENST00000483519 CIB2O75838 187 aa13.95□□□□□ -0.18
USP40-214ENST00000483519 CALCAP01258 141 aa13.95□□□□□ -0.18
USP40-214ENST00000483519 UBTFL6P0CB48 400 aaPredicted RBP13.95□□□□□ -0.18
USP40-214ENST00000483519 ETS1P14921 441 aa13.95□□□□□ -0.18
USP40-214ENST00000483519 GLRA2P23416 452 aa13.95□□□□□ -0.18
USP40-214ENST00000483519 PSMC4P43686 418 aa13.95□□□□□ -0.18
USP40-214ENST00000483519 VCPP55072 806 aaKnown RBP13.95□□□□□ -0.18
USP40-214ENST00000483519 NCKAP1LP55160 1127 aa13.95□□□□□ -0.18
USP40-214ENST00000483519 SH3BGRP55822 239 aaPredicted RBP13.95□□□□□ -0.18
USP40-214ENST00000483519 ARL4CP56559 192 aa13.95□□□□□ -0.18
USP40-214ENST00000483519 MAMLD1Q13495 774 aa13.95□□□□□ -0.18
USP40-214ENST00000483519 WDR72Q3MJ13 1102 aa13.95□□□□□ -0.18
USP40-214ENST00000483519 C2CD6Q53TS8 623 aa13.95□□□□□ -0.18
USP40-214ENST00000483519 RASIP1Q5U651 963 aa13.95□□□□□ -0.18
USP40-214ENST00000483519 LRRC6Q86X45 466 aa13.95□□□□□ -0.18
USP40-214ENST00000483519 KBTBD2Q8IY47 623 aa13.95□□□□□ -0.18
USP40-214ENST00000483519 AZIN2Q96A70 460 aa13.95□□□□□ -0.18
USP40-214ENST00000483519 OXNAD1Q96HP4 312 aaPredicted RBP13.95□□□□□ -0.18
USP40-214ENST00000483519 VCPIP1Q96JH7 1222 aa13.95□□□□□ -0.18
USP40-214ENST00000483519 FAM161BQ96MY7 647 aa13.95□□□□□ -0.18
USP40-214ENST00000483519 SLITRK1Q96PX8 696 aa13.95□□□□□ -0.18
USP40-214ENST00000483519 LBHD1Q9BQE6 289 aaPredicted RBP13.95□□□□□ -0.18
USP40-214ENST00000483519 C11orf70Q9BRQ4 267 aa13.95□□□□□ -0.18
USP40-214ENST00000483519 CENPKQ9BS16 269 aa13.95□□□□□ -0.18
USP40-214ENST00000483519 KCNK13Q9HB14 408 aa13.95□□□□□ -0.18
USP40-214ENST00000483519 TOPORSQ9NS56 1045 aaPredicted RBP13.95□□□□□ -0.18
USP40-214ENST00000483519 IL1RAPL1Q9NZN1 696 aa13.95□□□□□ -0.18
USP40-214ENST00000483519 SLC17A7Q9P2U7 560 aa13.95□□□□□ -0.18
USP40-214ENST00000483519 DNAJB4Q9UDY4 337 aa13.95□□□□□ -0.18
USP40-214ENST00000483519 POLIQ9UNA4 740 aa13.95□□□□□ -0.18
USP40-214ENST00000483519 SLC4A7Q9Y6M7 1214 aa13.95□□□□□ -0.18
USP40-214ENST00000483519 WASF2Q9Y6W5 498 aa13.95□□□□□ -0.18
USP40-214ENST00000483519 ADAMTSL1Q8N6G6 1762 aa13.95□□□□□ -0.18
USP40-214ENST00000483519 CLUHO75153 1309 aa13.95□□□□□ -0.18
USP40-214ENST00000483519 DDX39AO00148 427 aaKnown RBP13.95□□□□□ -0.18
USP40-214ENST00000483519 FCHO1O14526 889 aa13.95□□□□□ -0.18
USP40-214ENST00000483519 RIMBP2O15034 1052 aa13.95□□□□□ -0.18
USP40-214ENST00000483519 TLR3O15455 904 aaKnown RBP13.95□□□□□ -0.18
USP40-214ENST00000483519 LPXNO60711 386 aa13.95□□□□□ -0.18
USP40-214ENST00000483519 IL1BP01584 269 aa13.95□□□□□ -0.18
USP40-214ENST00000483519 KRT1P04264 644 aa13.95□□□□□ -0.18
USP40-214ENST00000483519 DLDP09622 509 aaKnown RBP13.95□□□□□ -0.18
USP40-214ENST00000483519 KRT10P13645 584 aa13.95□□□□□ -0.18
USP40-214ENST00000483519 STAT2P52630 851 aa13.95□□□□□ -0.18
USP40-214ENST00000483519 PEX3P56589 373 aa13.95□□□□□ -0.18
USP40-214ENST00000483519 TFDP1Q14186 410 aa13.95□□□□□ -0.18
USP40-214ENST00000483519 TRMT5Q32P41 509 aaKnown RBP13.95□□□□□ -0.18
USP40-214ENST00000483519 LRRC23Q53EV4 343 aaPredicted RBP13.95□□□□□ -0.18
USP40-214ENST00000483519 PPP1R2P3Q6NXS1 205 aa13.95□□□□□ -0.18
USP40-214ENST00000483519 TATDN1Q6P1N9 297 aa13.95□□□□□ -0.18
USP40-214ENST00000483519 SV2AQ7L0J3 742 aa13.95□□□□□ -0.18
USP40-214ENST00000483519 NET1Q7Z628 596 aaPredicted RBP13.95□□□□□ -0.18
USP40-214ENST00000483519 TMPRSS6Q8IU80 811 aa13.95□□□□□ -0.18
USP40-214ENST00000483519 NFKBIEO00221 500 aa13.94□□□□□ -0.18
USP40-214ENST00000483519 ITGAVP06756 1048 aa13.94□□□□□ -0.18
USP40-214ENST00000483519 AP2B1P63010 937 aa13.94□□□□□ -0.18
USP40-214ENST00000483519 TCP10Q12799 353 aa13.94□□□□□ -0.18
USP40-214ENST00000483519 IRF5Q13568 498 aa13.94□□□□□ -0.18
USP40-214ENST00000483519 EFTUD2Q15029 972 aaKnown RBP eCLIP13.94□□□□□ -0.18
USP40-214ENST00000483519 PRKD1Q15139 912 aaPredicted RBP13.94□□□□□ -0.18
USP40-214ENST00000483519 NLRX1Q86UT6 975 aa13.94□□□□□ -0.18
USP40-214ENST00000483519 MZB1Q8WU39 189 aa13.94□□□□□ -0.18
USP40-214ENST00000483519 MFSD14AQ96MC6 490 aa13.94□□□□□ -0.18
USP40-214ENST00000483519 ZC3H12CQ9C0D7 883 aaKnown RBP13.94□□□□□ -0.18
USP40-214ENST00000483519 KLHL11Q9NVR0 708 aa13.94□□□□□ -0.18
USP40-214ENST00000483519 NDE1Q9NXR1 346 aa13.94□□□□□ -0.18
USP40-214ENST00000483519 IP6K2Q9UHH9 426 aa13.94□□□□□ -0.18
USP40-214ENST00000483519 ZHX2Q9Y6X8 837 aa13.94□□□□□ -0.18
USP40-214ENST00000483519 PI4K2BG5E9Z4 385 aa13.94□□□□□ -0.18
USP40-214ENST00000483519 GOLGA8RI6L899 631 aa13.94□□□□□ -0.18
USP40-214ENST00000483519 SGK1O00141 431 aa13.94□□□□□ -0.18
USP40-214ENST00000483519 PDLIM1O00151 329 aa13.94□□□□□ -0.18
USP40-214ENST00000483519 GDF11O95390 407 aa13.94□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms