RNA–Protein interactions for RNA: ENST00000479712.1

UPF3A-205, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 423 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-205ENST00000479712 ZDBF2Q9HCK1 2354 aa6.41□□□□□ -1.38
UPF3A-205ENST00000479712 COL4A5P29400 1685 aa6.41□□□□□ -1.38
UPF3A-205ENST00000479712 NRXN2Q9P2S2 1712 aa6.41□□□□□ -1.38
UPF3A-205ENST00000479712 MYH14Q7Z406 1995 aaKnown RBP6.4□□□□□ -1.38
UPF3A-205ENST00000479712 CHD8Q9HCK8 2581 aa6.4□□□□□ -1.38
UPF3A-205ENST00000479712 RASA4BC9J798 803 aa6.4□□□□□ -1.38
UPF3A-205ENST00000479712 FFAR3O14843 346 aa6.4□□□□□ -1.38
UPF3A-205ENST00000479712 TEX33O43247 280 aa6.4□□□□□ -1.38
UPF3A-205ENST00000479712 RASA4O43374 803 aa6.4□□□□□ -1.38
UPF3A-205ENST00000479712 KITP10721 976 aa6.4□□□□□ -1.38
UPF3A-205ENST00000479712 PRIM2P49643 509 aa6.4□□□□□ -1.38
UPF3A-205ENST00000479712 NHLH1Q02575 133 aa6.4□□□□□ -1.38
UPF3A-205ENST00000479712 SP140Q13342 867 aa6.4□□□□□ -1.38
UPF3A-205ENST00000479712 NFIXQ14938 502 aa6.4□□□□□ -1.38
UPF3A-205ENST00000479712 ACAP1Q15027 740 aa6.4□□□□□ -1.38
UPF3A-205ENST00000479712 TBR1Q16650 682 aa6.4□□□□□ -1.38
UPF3A-205ENST00000479712 GRAMD1BQ3KR37 738 aa6.4□□□□□ -1.38
UPF3A-205ENST00000479712 ZNF385BQ569K4 471 aa6.4□□□□□ -1.38
UPF3A-205ENST00000479712 TMEM31Q5JXX7 168 aa6.4□□□□□ -1.38
UPF3A-205ENST00000479712 C1orf228Q6PIY5 440 aa6.4□□□□□ -1.38
UPF3A-205ENST00000479712 ZNF572Q7Z3I7 529 aaPredicted RBP6.4□□□□□ -1.38
UPF3A-205ENST00000479712 TDHQ8IZJ6 230 aa6.4□□□□□ -1.38
UPF3A-205ENST00000479712 ENAHQ8N8S7 591 aaPredicted RBP6.4□□□□□ -1.38
UPF3A-205ENST00000479712 OR5M3Q8NGP4 307 aa6.4□□□□□ -1.38
UPF3A-205ENST00000479712 BRIX1Q8TDN6 353 aaKnown RBP6.4□□□□□ -1.38
UPF3A-205ENST00000479712 ANKS1AQ92625 1134 aa6.4□□□□□ -1.38
UPF3A-205ENST00000479712 PHKBQ93100 1093 aa6.4□□□□□ -1.38
UPF3A-205ENST00000479712 LCORQ96JN0 433 aaPredicted RBP6.4□□□□□ -1.38
UPF3A-205ENST00000479712 FAM84AQ96KN4 292 aa6.4□□□□□ -1.38
UPF3A-205ENST00000479712 PPP1R16BQ96T49 567 aa6.4□□□□□ -1.38
UPF3A-205ENST00000479712 KIAA1586Q9HCI6 787 aa6.4□□□□□ -1.38
UPF3A-205ENST00000479712 ADARB2Q9NS39 739 aaKnown RBP6.4□□□□□ -1.38
UPF3A-205ENST00000479712 FNIP2Q9P278 1114 aa6.4□□□□□ -1.38
UPF3A-205ENST00000479712 ZMYND8Q9ULU4 1186 aaPredicted RBP6.4□□□□□ -1.38
UPF3A-205ENST00000479712 SMG5Q9UPR3 1016 aaKnown RBP6.4□□□□□ -1.38
UPF3A-205ENST00000479712 RUVBL1Q9Y265 456 aaKnown RBP6.4□□□□□ -1.38
UPF3A-205ENST00000479712 PCDHA1Q9Y5I3 950 aa6.4□□□□□ -1.38
UPF3A-205ENST00000479712 SNX13Q9Y5W8 968 aa6.4□□□□□ -1.38
UPF3A-205ENST00000479712 SMG6Q86US8 1419 aaKnown RBP6.4□□□□□ -1.39
UPF3A-205ENST00000479712 COL5A3P25940 1745 aaPredicted RBP6.39□□□□□ -1.39
UPF3A-205ENST00000479712 NT5C1B-RDH14C9J2C7 533 aa6.39□□□□□ -1.39
UPF3A-205ENST00000479712 KPNA5O15131 536 aa6.39□□□□□ -1.39
UPF3A-205ENST00000479712 ARHGAP6O43182 974 aa6.39□□□□□ -1.39
UPF3A-205ENST00000479712 CD1AP06126 327 aa6.39□□□□□ -1.39
UPF3A-205ENST00000479712 SETSIPP0DME0 302 aa6.39□□□□□ -1.39
UPF3A-205ENST00000479712 RAP2AP10114 183 aa6.39□□□□□ -1.39
UPF3A-205ENST00000479712 RPL17P18621 184 aaKnown RBP6.39□□□□□ -1.39
UPF3A-205ENST00000479712 SLC7A1P30825 629 aa6.39□□□□□ -1.39
UPF3A-205ENST00000479712 ALDH1A3P47895 512 aa6.39□□□□□ -1.39
UPF3A-205ENST00000479712 AFF3P51826 1226 aaKnown RBP6.39□□□□□ -1.39
UPF3A-205ENST00000479712 ADAM8P78325 824 aa6.39□□□□□ -1.39
UPF3A-205ENST00000479712 HGFACQ04756 655 aa6.39□□□□□ -1.39
UPF3A-205ENST00000479712 DHX8Q14562 1220 aaKnown RBP6.39□□□□□ -1.39
UPF3A-205ENST00000479712 ATP2B3Q16720 1220 aa6.39□□□□□ -1.39
UPF3A-205ENST00000479712 SLC9C1Q4G0N8 1177 aa6.39□□□□□ -1.39
UPF3A-205ENST00000479712 KHDC1LQ5JSQ8 128 aa6.39□□□□□ -1.39
UPF3A-205ENST00000479712 DPP9Q86TI2 863 aa6.39□□□□□ -1.39
UPF3A-205ENST00000479712 SKAP1Q86WV1 359 aa6.39□□□□□ -1.39
UPF3A-205ENST00000479712 CMTM4Q8IZR5 234 aa6.39□□□□□ -1.39
UPF3A-205ENST00000479712 DCBLD1Q8N8Z6 715 aa6.39□□□□□ -1.39
UPF3A-205ENST00000479712 DACT3Q96B18 629 aaPredicted RBP6.39□□□□□ -1.39
UPF3A-205ENST00000479712 SGCZQ96LD1 299 aa6.39□□□□□ -1.39
UPF3A-205ENST00000479712 KRTAP4-2Q9BYR5 136 aa6.39□□□□□ -1.39
UPF3A-205ENST00000479712 OGDHLQ9ULD0 1010 aa6.39□□□□□ -1.39
UPF3A-205ENST00000479712 PCDHA6Q9UN73 950 aa6.39□□□□□ -1.39
UPF3A-205ENST00000479712 NR2E1Q9Y466 385 aa6.39□□□□□ -1.39
UPF3A-205ENST00000479712 KIF7Q2M1P5 1343 aa6.39□□□□□ -1.39
UPF3A-205ENST00000479712 ZFHX4Q86UP3 3567 aa6.38□□□□□ -1.39
UPF3A-205ENST00000479712 ADM5C9JUS6 153 aa6.38□□□□□ -1.39
UPF3A-205ENST00000479712 F2RL2O00254 374 aa6.38□□□□□ -1.39
UPF3A-205ENST00000479712 WNT10BO00744 389 aa6.38□□□□□ -1.39
UPF3A-205ENST00000479712 SASH1O94885 1247 aa6.38□□□□□ -1.39
UPF3A-205ENST00000479712 FARP2O94887 1054 aaPredicted RBP6.38□□□□□ -1.39
UPF3A-205ENST00000479712 FOSP01100 380 aaPredicted RBP6.38□□□□□ -1.39
UPF3A-205ENST00000479712 KRT1P04264 644 aa6.38□□□□□ -1.39
UPF3A-205ENST00000479712 BRAFP15056 766 aa6.38□□□□□ -1.39
UPF3A-205ENST00000479712 FOSL2P15408 326 aa6.38□□□□□ -1.39
UPF3A-205ENST00000479712 ALOX15P16050 662 aaPredicted RBP6.38□□□□□ -1.39
UPF3A-205ENST00000479712 NPR1P16066 1061 aa6.38□□□□□ -1.39
UPF3A-205ENST00000479712 PRDX5P30044 214 aa6.38□□□□□ -1.39
UPF3A-205ENST00000479712 CASP5P51878 434 aa6.38□□□□□ -1.39
UPF3A-205ENST00000479712 CREMQ03060 361 aa6.38□□□□□ -1.39
UPF3A-205ENST00000479712 CHAF1AQ13111 956 aaPredicted RBP6.38□□□□□ -1.39
UPF3A-205ENST00000479712 STK3Q13188 491 aa6.38□□□□□ -1.39
UPF3A-205ENST00000479712 NFYCQ13952 458 aa6.38□□□□□ -1.39
UPF3A-205ENST00000479712 CCDC93Q567U6 631 aa6.38□□□□□ -1.39
UPF3A-205ENST00000479712 AFMIDQ63HM1 303 aa6.38□□□□□ -1.39
UPF3A-205ENST00000479712 PPP1R3BQ86XI6 285 aa6.38□□□□□ -1.39
UPF3A-205ENST00000479712 ZNF761Q86XN6 746 aaPredicted RBP6.38□□□□□ -1.39
UPF3A-205ENST00000479712 FAM90A1Q86YD7 464 aa6.38□□□□□ -1.39
UPF3A-205ENST00000479712 PLXDC1Q8IUK5 500 aa6.38□□□□□ -1.39
UPF3A-205ENST00000479712 OR2C3Q8N628 320 aa6.38□□□□□ -1.39
UPF3A-205ENST00000479712 CELF5Q8N6W0 485 aaKnown RBP6.38□□□□□ -1.39
UPF3A-205ENST00000479712 MBD6Q96DN6 1003 aa6.38□□□□□ -1.39
UPF3A-205ENST00000479712 CEP95Q96GE4 821 aa6.38□□□□□ -1.39
UPF3A-205ENST00000479712 RIPOR3Q96MK2 946 aa6.38□□□□□ -1.39
UPF3A-205ENST00000479712 GPHA2Q96T91 129 aa6.38□□□□□ -1.39
UPF3A-205ENST00000479712 C11orf54Q9H0W9 315 aaPredicted RBP6.38□□□□□ -1.39
UPF3A-205ENST00000479712 ZNF287Q9HBT7 754 aa6.38□□□□□ -1.39
UPF3A-205ENST00000479712 PTPRHQ9HD43 1115 aa6.38□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms