RNA–Protein interactions for RNA: ENST00000478934.5

VPS52-217, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 2,602 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-217ENST00000478934 C12orf65Q9H3J6 166 aaKnown RBP11.4□□□□□ -0.58
VPS52-217ENST00000478934 ECT2Q9H8V3 914 aa11.4□□□□□ -0.58
VPS52-217ENST00000478934 USP15Q9Y4E8 981 aaPredicted RBP11.4□□□□□ -0.58
VPS52-217ENST00000478934 POLR2AP24928 1970 aaKnown RBP11.4□□□□□ -0.58
VPS52-217ENST00000478934 hCG_1818297A0A087WSY0 165 aa11.39□□□□□ -0.59
VPS52-217ENST00000478934 RASA4BC9J798 803 aa11.39□□□□□ -0.59
VPS52-217ENST00000478934 SGK1O00141 431 aa11.39□□□□□ -0.59
VPS52-217ENST00000478934 RASA4O43374 803 aa11.39□□□□□ -0.59
VPS52-217ENST00000478934 DNAJC8O75937 253 aaPredicted RBP11.39□□□□□ -0.59
VPS52-217ENST00000478934 NFICP08651 508 aa11.39□□□□□ -0.59
VPS52-217ENST00000478934 RFC5P40937 340 aa11.39□□□□□ -0.59
VPS52-217ENST00000478934 CDKN2BP42772 138 aa11.39□□□□□ -0.59
VPS52-217ENST00000478934 ENPEPQ07075 957 aa11.39□□□□□ -0.59
VPS52-217ENST00000478934 ITIH4Q14624 930 aa11.39□□□□□ -0.59
VPS52-217ENST00000478934 PKN2Q16513 984 aaKnown RBP11.39□□□□□ -0.59
VPS52-217ENST00000478934 MSS51Q4VC12 460 aa11.39□□□□□ -0.59
VPS52-217ENST00000478934 PPP1R15BQ5SWA1 713 aa11.39□□□□□ -0.59
VPS52-217ENST00000478934 SYDE1Q6ZW31 735 aaPredicted RBP11.39□□□□□ -0.59
VPS52-217ENST00000478934 ZBED8Q8IZ13 594 aa11.39□□□□□ -0.59
VPS52-217ENST00000478934 RCOR2Q8IZ40 523 aa11.39□□□□□ -0.59
VPS52-217ENST00000478934 PPP1R13LQ8WUF5 828 aa11.39□□□□□ -0.59
VPS52-217ENST00000478934 CPXM1Q96SM3 734 aa11.39□□□□□ -0.59
VPS52-217ENST00000478934 GPR20Q99678 358 aa11.39□□□□□ -0.59
VPS52-217ENST00000478934 SMYD3Q9H7B4 428 aa11.39□□□□□ -0.59
VPS52-217ENST00000478934 NOD2Q9HC29 1040 aa11.39□□□□□ -0.59
VPS52-217ENST00000478934 SLCO1B3Q9NPD5 702 aa11.39□□□□□ -0.59
VPS52-217ENST00000478934 RNF19AQ9NV58 838 aa11.39□□□□□ -0.59
VPS52-217ENST00000478934 TCRBV7S3A2A0A539 114 aa11.39□□□□□ -0.59
VPS52-217ENST00000478934 IGF2BP3O00425 579 aaKnown RBP eCLIP11.39□□□□□ -0.59
VPS52-217ENST00000478934 DNALI1O14645 258 aaPredicted RBP11.39□□□□□ -0.59
VPS52-217ENST00000478934 OGTO15294 1046 aa11.39□□□□□ -0.59
VPS52-217ENST00000478934 EDNRBP24530 442 aa11.39□□□□□ -0.59
VPS52-217ENST00000478934 PSMA2P25787 234 aa11.39□□□□□ -0.59
VPS52-217ENST00000478934 MAN1A1P33908 653 aa11.39□□□□□ -0.59
VPS52-217ENST00000478934 WDR4P57081 412 aaKnown RBP11.39□□□□□ -0.59
VPS52-217ENST00000478934 NCALDP61601 193 aa11.39□□□□□ -0.59
VPS52-217ENST00000478934 MAPK6Q16659 721 aa11.39□□□□□ -0.59
VPS52-217ENST00000478934 METTL7BQ6UX53 244 aa11.39□□□□□ -0.59
VPS52-217ENST00000478934 AEBP2Q6ZN18 517 aaPredicted RBP11.39□□□□□ -0.59
VPS52-217ENST00000478934 ZCCHC9Q8N567 271 aaKnown RBP11.39□□□□□ -0.59
VPS52-217ENST00000478934 ALLCQ8N6M5 410 aa11.39□□□□□ -0.59
VPS52-217ENST00000478934 TMEM35BQ8NCS4 154 aa11.39□□□□□ -0.59
VPS52-217ENST00000478934 STAMBPL1Q96FJ0 436 aa11.39□□□□□ -0.59
VPS52-217ENST00000478934 RNPEPQ9H4A4 650 aa11.39□□□□□ -0.59
VPS52-217ENST00000478934 CCDC134Q9H6E4 229 aa11.39□□□□□ -0.59
VPS52-217ENST00000478934 VPS37BQ9H9H4 285 aa11.39□□□□□ -0.59
VPS52-217ENST00000478934 SIX4Q9UIU6 781 aa11.39□□□□□ -0.59
VPS52-217ENST00000478934 GRID1Q9ULK0 1009 aa11.39□□□□□ -0.59
VPS52-217ENST00000478934 EXOC1LA0A1B0GW35 172 aa11.39□□□□□ -0.59
VPS52-217ENST00000478934 A0A1W2PPM1 405 aa11.39□□□□□ -0.59
VPS52-217ENST00000478934 C3orf70A6NLC5 250 aaPredicted RBP11.39□□□□□ -0.59
VPS52-217ENST00000478934 GPR25O00155 361 aa11.39□□□□□ -0.59
VPS52-217ENST00000478934 NOP56O00567 594 aaKnown RBP11.39□□□□□ -0.59
VPS52-217ENST00000478934 MGRN1O60291 552 aa11.39□□□□□ -0.59
VPS52-217ENST00000478934 CNMDO75829 334 aa11.39□□□□□ -0.59
VPS52-217ENST00000478934 DDNO94850 711 aaPredicted RBP11.39□□□□□ -0.59
VPS52-217ENST00000478934 GHRP10912 638 aa11.39□□□□□ -0.59
VPS52-217ENST00000478934 DNAJC3Q13217 504 aa11.39□□□□□ -0.59
VPS52-217ENST00000478934 SGSM1Q2NKQ1 1148 aa11.39□□□□□ -0.59
VPS52-217ENST00000478934 FAM160B1Q5W0V3 765 aa11.39□□□□□ -0.59
VPS52-217ENST00000478934 ZPBP2Q6X784 338 aa11.39□□□□□ -0.59
VPS52-217ENST00000478934 RIOX2Q8IUF8 465 aa11.39□□□□□ -0.59
VPS52-217ENST00000478934 CKAP2Q8WWK9 683 aa11.39□□□□□ -0.59
VPS52-217ENST00000478934 MAML1Q92585 1016 aa11.39□□□□□ -0.59
VPS52-217ENST00000478934 CPB2Q96IY4 423 aa11.39□□□□□ -0.59
VPS52-217ENST00000478934 SPATA33Q96N06 139 aa11.39□□□□□ -0.59
VPS52-217ENST00000478934 NSRP1Q9H0G5 558 aaKnown RBP11.39□□□□□ -0.59
VPS52-217ENST00000478934 ASCC2Q9H1I8 757 aaPredicted RBP11.39□□□□□ -0.59
VPS52-217ENST00000478934 CXCL16Q9H2A7 254 aa11.39□□□□□ -0.59
VPS52-217ENST00000478934 EURLQ9NYK6 297 aa11.39□□□□□ -0.59
VPS52-217ENST00000478934 CEP350Q5VT06 3117 aa11.38□□□□□ -0.59
VPS52-217ENST00000478934 RGPD3A6NKT7 1758 aaPredicted RBP11.38□□□□□ -0.59
VPS52-217ENST00000478934 RGPD4Q7Z3J3 1758 aa11.38□□□□□ -0.59
VPS52-217ENST00000478934 LRCH4O75427 683 aa11.38□□□□□ -0.59
VPS52-217ENST00000478934 TJP3O95049 919 aa11.38□□□□□ -0.59
VPS52-217ENST00000478934 OAS1P00973 400 aaKnown RBP11.38□□□□□ -0.59
VPS52-217ENST00000478934 ERBB2P04626 1255 aa11.38□□□□□ -0.59
VPS52-217ENST00000478934 CALB1P05937 261 aa11.38□□□□□ -0.59
VPS52-217ENST00000478934 KRT16P08779 473 aa11.38□□□□□ -0.59
VPS52-217ENST00000478934 CDC25CP30307 473 aa11.38□□□□□ -0.59
VPS52-217ENST00000478934 PSMC1P62191 440 aaKnown RBP11.38□□□□□ -0.59
VPS52-217ENST00000478934 IRX3P78415 501 aaPredicted RBP11.38□□□□□ -0.59
VPS52-217ENST00000478934 LACTBP83111 547 aaPredicted RBP11.38□□□□□ -0.59
VPS52-217ENST00000478934 OTUD4Q01804 1114 aaKnown RBP11.38□□□□□ -0.59
VPS52-217ENST00000478934 MCL1Q07820 350 aa11.38□□□□□ -0.59
VPS52-217ENST00000478934 PDIA2Q13087 525 aaKnown RBP11.38□□□□□ -0.59
VPS52-217ENST00000478934 NEDD9Q14511 834 aa11.38□□□□□ -0.59
VPS52-217ENST00000478934 OASLQ15646 514 aaKnown RBP11.38□□□□□ -0.59
VPS52-217ENST00000478934 EAPPQ56P03 285 aaPredicted RBP11.38□□□□□ -0.59
VPS52-217ENST00000478934 SH3D19Q5HYK7 790 aa11.38□□□□□ -0.59
VPS52-217ENST00000478934 FNBP1LQ5T0N5 605 aa11.38□□□□□ -0.59
VPS52-217ENST00000478934 ATF7IP2Q5U623 682 aa11.38□□□□□ -0.59
VPS52-217ENST00000478934 SPATA21Q7Z572 469 aa11.38□□□□□ -0.59
VPS52-217ENST00000478934 UBA3Q8TBC4 463 aa11.38□□□□□ -0.59
VPS52-217ENST00000478934 ACTL9Q8TC94 416 aa11.38□□□□□ -0.59
VPS52-217ENST00000478934 PIWIL1Q96J94 861 aaKnown RBP11.38□□□□□ -0.59
VPS52-217ENST00000478934 NCAPGQ9BPX3 1015 aa11.38□□□□□ -0.59
VPS52-217ENST00000478934 METTL5Q9NRN9 209 aaKnown RBP11.38□□□□□ -0.59
VPS52-217ENST00000478934 CST8O60676 142 aa11.38□□□□□ -0.59
VPS52-217ENST00000478934 GRAP2O75791 330 aa11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms