RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 CDC25CP30307 473 aa20.2■□□□□ 0.82
CCDC88B-206ENST00000473405 GPR15P49685 360 aa20.2■□□□□ 0.82
CCDC88B-206ENST00000473405 MLLT6P55198 1093 aaPredicted RBP20.2■□□□□ 0.82
CCDC88B-206ENST00000473405 RBP5P82980 135 aa20.2■□□□□ 0.82
CCDC88B-206ENST00000473405 FAM26FQ5R3K3 315 aa20.2■□□□□ 0.82
CCDC88B-206ENST00000473405 TSSK4Q6SA08 328 aa20.2■□□□□ 0.82
CCDC88B-206ENST00000473405 YAF2Q8IY57 180 aa20.2■□□□□ 0.82
CCDC88B-206ENST00000473405 SUMF1Q8NBK3 374 aa20.2■□□□□ 0.82
CCDC88B-206ENST00000473405 ZNF507Q8TCN5 953 aa20.2■□□□□ 0.82
CCDC88B-206ENST00000473405 ZFYVE19Q96K21 471 aa20.2■□□□□ 0.82
CCDC88B-206ENST00000473405 C7orf25Q9BPX7 421 aa20.2■□□□□ 0.82
CCDC88B-206ENST00000473405 PI4K2AQ9BTU6 479 aa20.2■□□□□ 0.82
CCDC88B-206ENST00000473405 TASP1Q9H6P5 420 aa20.2■□□□□ 0.82
CCDC88B-206ENST00000473405 SNX9Q9Y5X1 595 aa20.2■□□□□ 0.82
CCDC88B-206ENST00000473405 HELZP42694 1942 aaKnown RBP20.19■□□□□ 0.82
CCDC88B-206ENST00000473405 GABRDO14764 452 aa20.19■□□□□ 0.82
CCDC88B-206ENST00000473405 TGFB1I1O43294 461 aa20.19■□□□□ 0.82
CCDC88B-206ENST00000473405 TDGF1P13385 188 aa20.19■□□□□ 0.82
CCDC88B-206ENST00000473405 CCNE1P24864 410 aa20.19■□□□□ 0.82
CCDC88B-206ENST00000473405 CASP1P29466 404 aa20.19■□□□□ 0.82
CCDC88B-206ENST00000473405 SOX9P48436 509 aa20.19■□□□□ 0.82
CCDC88B-206ENST00000473405 AMPD3Q01432 767 aa20.19■□□□□ 0.82
CCDC88B-206ENST00000473405 NFE2Q16621 373 aaPredicted RBP20.19■□□□□ 0.82
CCDC88B-206ENST00000473405 SOWAHAQ2M3V2 549 aa20.19■□□□□ 0.82
CCDC88B-206ENST00000473405 WDR44Q5JSH3 913 aa20.19■□□□□ 0.82
CCDC88B-206ENST00000473405 INTS6LQ5JSJ4 861 aaKnown RBP20.19■□□□□ 0.82
CCDC88B-206ENST00000473405 LIMS2Q7Z4I7 341 aa20.19■□□□□ 0.82
CCDC88B-206ENST00000473405 HSCBQ8IWL3 235 aa20.19■□□□□ 0.82
CCDC88B-206ENST00000473405 ADGRF2Q8IZF7 708 aa20.19■□□□□ 0.82
CCDC88B-206ENST00000473405 TOP6BLQ8N6T0 577 aa20.19■□□□□ 0.82
CCDC88B-206ENST00000473405 ZBTB44Q8NCP5 570 aa20.19■□□□□ 0.82
CCDC88B-206ENST00000473405 CSGALNACT1Q8TDX6 532 aa20.19■□□□□ 0.82
CCDC88B-206ENST00000473405 MSANTD3Q96H12 275 aa20.19■□□□□ 0.82
CCDC88B-206ENST00000473405 GCNAQ96QF7 691 aa20.19■□□□□ 0.82
CCDC88B-206ENST00000473405 SLC46A2Q9BY10 475 aa20.19■□□□□ 0.82
CCDC88B-206ENST00000473405 SMG9Q9H0W8 520 aaKnown RBP20.19■□□□□ 0.82
CCDC88B-206ENST00000473405 MAGEF1Q9HAY2 307 aa20.19■□□□□ 0.82
CCDC88B-206ENST00000473405 ABCB6Q9NP58 842 aa20.19■□□□□ 0.82
CCDC88B-206ENST00000473405 AGPAT3Q9NRZ7 376 aa20.19■□□□□ 0.82
CCDC88B-206ENST00000473405 PCDHGA2Q9Y5H1 932 aa20.19■□□□□ 0.82
CCDC88B-206ENST00000473405 ZNF233A6NK53 670 aa20.18■□□□□ 0.82
CCDC88B-206ENST00000473405 POLR2DO15514 142 aaKnown RBP20.18■□□□□ 0.82
CCDC88B-206ENST00000473405 KINO60870 393 aaKnown RBP20.18■□□□□ 0.82
CCDC88B-206ENST00000473405 F11P03951 625 aa20.18■□□□□ 0.82
CCDC88B-206ENST00000473405 CHRNB1P11230 501 aa20.18■□□□□ 0.82
CCDC88B-206ENST00000473405 CYP2F1P24903 491 aa20.18■□□□□ 0.82
CCDC88B-206ENST00000473405 NLRP12P59046 1061 aa20.18■□□□□ 0.82
CCDC88B-206ENST00000473405 TAF12Q16514 161 aa20.18■□□□□ 0.82
CCDC88B-206ENST00000473405 ARHGAP29Q52LW3 1261 aa20.18■□□□□ 0.82
CCDC88B-206ENST00000473405 TXNDC11Q6PKC3 985 aa20.18■□□□□ 0.82
CCDC88B-206ENST00000473405 SPATA18Q8TC71 538 aa20.18■□□□□ 0.82
CCDC88B-206ENST00000473405 SCFD1Q8WVM8 642 aa20.18■□□□□ 0.82
CCDC88B-206ENST00000473405 KBTBD7Q8WVZ9 684 aa20.18■□□□□ 0.82
CCDC88B-206ENST00000473405 ANKRD36BP1Q96IX9 119 aa20.18■□□□□ 0.82
CCDC88B-206ENST00000473405 GTSE1Q9NYZ3 720 aa20.18■□□□□ 0.82
CCDC88B-206ENST00000473405 GTF3C4Q9UKN8 822 aa20.18■□□□□ 0.82
CCDC88B-206ENST00000473405 PCDHA7Q9UN72 937 aa20.18■□□□□ 0.82
CCDC88B-206ENST00000473405 LAMA1P25391 3075 aa20.17■□□□□ 0.82
CCDC88B-206ENST00000473405 MYBPHLA2RUH7 354 aa20.17■□□□□ 0.82
CCDC88B-206ENST00000473405 DPYSL4O14531 572 aa20.17■□□□□ 0.82
CCDC88B-206ENST00000473405 LILRB5O75023 590 aa20.17■□□□□ 0.82
CCDC88B-206ENST00000473405 PRPF40AO75400 957 aaKnown RBP20.17■□□□□ 0.82
CCDC88B-206ENST00000473405 TADA3O75528 432 aa20.17■□□□□ 0.82
CCDC88B-206ENST00000473405 CTHP32929 405 aa20.17■□□□□ 0.82
CCDC88B-206ENST00000473405 MYL7Q01449 175 aa20.17■□□□□ 0.82
CCDC88B-206ENST00000473405 SNRNP35Q16560 246 aaKnown RBP20.17■□□□□ 0.82
CCDC88B-206ENST00000473405 SDHAF4Q5VUM1 108 aa20.17■□□□□ 0.82
CCDC88B-206ENST00000473405 RESP18Q5W5W9 173 aa20.17■□□□□ 0.82
CCDC88B-206ENST00000473405 MAMSTRQ6ZN01 415 aa20.17■□□□□ 0.82
CCDC88B-206ENST00000473405 UNC13DQ70J99 1090 aa20.17■□□□□ 0.82
CCDC88B-206ENST00000473405 WDR49Q8IV35 697 aa20.17■□□□□ 0.82
CCDC88B-206ENST00000473405 CMTM8Q8IZV2 173 aa20.17■□□□□ 0.82
CCDC88B-206ENST00000473405 BPIFB1Q8TDL5 484 aa20.17■□□□□ 0.82
CCDC88B-206ENST00000473405 IER2Q9BTL4 223 aa20.17■□□□□ 0.82
CCDC88B-206ENST00000473405 LMAN1LQ9HAT1 526 aa20.17■□□□□ 0.82
CCDC88B-206ENST00000473405 ZSCAN32Q9NX65 697 aa20.17■□□□□ 0.82
CCDC88B-206ENST00000473405 CCL26Q9Y258 94 aa20.17■□□□□ 0.82
CCDC88B-206ENST00000473405 UBE4BO95155 1302 aa20.17■□□□□ 0.82
CCDC88B-206ENST00000473405 SPECC1L-ADORA2AF8WAN1 911 aa20.16■□□□□ 0.82
CCDC88B-206ENST00000473405 TNNC2P02585 160 aa20.16■□□□□ 0.82
CCDC88B-206ENST00000473405 PDIA4P13667 645 aaKnown RBP20.16■□□□□ 0.82
CCDC88B-206ENST00000473405 ME1P48163 572 aa20.16■□□□□ 0.82
CCDC88B-206ENST00000473405 LHX1P48742 406 aa20.16■□□□□ 0.82
CCDC88B-206ENST00000473405 KPNA1P52294 538 aaPredicted RBP20.16■□□□□ 0.82
CCDC88B-206ENST00000473405 TNK2Q07912 1038 aa20.16■□□□□ 0.82
CCDC88B-206ENST00000473405 MYO1EQ12965 1108 aa20.16■□□□□ 0.82
CCDC88B-206ENST00000473405 GAS6Q14393 721 aa20.16■□□□□ 0.82
CCDC88B-206ENST00000473405 DDR2Q16832 855 aa20.16■□□□□ 0.82
CCDC88B-206ENST00000473405 DUOXA2Q1HG44 320 aa20.16■□□□□ 0.82
CCDC88B-206ENST00000473405 CFAP221Q4G0U5 840 aa20.16■□□□□ 0.82
CCDC88B-206ENST00000473405 TTC8Q8TAM2 541 aa20.16■□□□□ 0.82
CCDC88B-206ENST00000473405 HPDLQ96IR7 371 aa20.16■□□□□ 0.82
CCDC88B-206ENST00000473405 GZF1Q9H116 711 aaPredicted RBP20.16■□□□□ 0.82
CCDC88B-206ENST00000473405 BLZF1Q9H2G9 400 aa20.16■□□□□ 0.82
CCDC88B-206ENST00000473405 C8orf33Q9H7E9 229 aaPredicted RBP20.16■□□□□ 0.82
CCDC88B-206ENST00000473405 KIAA1586Q9HCI6 787 aa20.16■□□□□ 0.82
CCDC88B-206ENST00000473405 ZMYM5Q9UJ78 669 aa20.16■□□□□ 0.82
CCDC88B-206ENST00000473405 NOL4O94818 638 aa20.15■□□□□ 0.82
CCDC88B-206ENST00000473405 HSP90AA1P07900 732 aaKnown RBP20.15■□□□□ 0.82
CCDC88B-206ENST00000473405 CSH1P0DML2 217 aa20.15■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms