RNA–Protein interactions for RNA: ENST00000473373.1

CPNE1-222, Transcript of copine 1, human

TSL 2

Gene CPNE1, Length 821 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPNE1-222	ENST00000473373	RPL10A	P62906	217 aa	Known RBP	12.34	□□□□□ -0.43
CPNE1-222	ENST00000473373	GPC5	P78333	572 aa		12.34	□□□□□ -0.43
CPNE1-222	ENST00000473373	FAM160A1	Q05DH4	1040 aa		12.34	□□□□□ -0.43
CPNE1-222	ENST00000473373	STIM1	Q13586	685 aa		12.34	□□□□□ -0.43
CPNE1-222	ENST00000473373	GRM2	Q14416	872 aa		12.34	□□□□□ -0.43
CPNE1-222	ENST00000473373	KCNB1	Q14721	858 aa		12.34	□□□□□ -0.43
CPNE1-222	ENST00000473373	MAPRE1	Q15691	268 aa	Known RBP	12.34	□□□□□ -0.43
CPNE1-222	ENST00000473373	ZNF667	Q5HYK9	610 aa		12.34	□□□□□ -0.43
CPNE1-222	ENST00000473373	PRSS36	Q5K4E3	855 aa		12.34	□□□□□ -0.43
CPNE1-222	ENST00000473373	GPR158	Q5T848	1215 aa		12.34	□□□□□ -0.43
CPNE1-222	ENST00000473373	SCARA5	Q6ZMJ2	495 aa		12.34	□□□□□ -0.43
CPNE1-222	ENST00000473373	DPH6	Q7L8W6	267 aa		12.34	□□□□□ -0.43
CPNE1-222	ENST00000473373	DNAJB7	Q7Z6W7	309 aa	Predicted RBP	12.34	□□□□□ -0.43
CPNE1-222	ENST00000473373	TTC16	Q8NEE8	873 aa		12.34	□□□□□ -0.43
CPNE1-222	ENST00000473373	ZSCAN18	Q8TBC5	510 aa	Predicted RBP	12.34	□□□□□ -0.43
CPNE1-222	ENST00000473373	SPATA18	Q8TC71	538 aa		12.34	□□□□□ -0.43
CPNE1-222	ENST00000473373	PSMG2	Q969U7	264 aa		12.34	□□□□□ -0.43
CPNE1-222	ENST00000473373	RPP25	Q9BUL9	199 aa	Known RBP	12.34	□□□□□ -0.43
CPNE1-222	ENST00000473373	CRISPLD1	Q9H336	500 aa		12.34	□□□□□ -0.43
CPNE1-222	ENST00000473373	AVEN	Q9NQS1	362 aa	Predicted RBP	12.34	□□□□□ -0.43
CPNE1-222	ENST00000473373	ARHGEF3	Q9NR81	526 aa		12.34	□□□□□ -0.43
CPNE1-222	ENST00000473373	HSFX1	Q9UBD0	423 aa		12.34	□□□□□ -0.43
CPNE1-222	ENST00000473373	MAGEC2	Q9UBF1	373 aa	Predicted RBP	12.34	□□□□□ -0.43
CPNE1-222	ENST00000473373	WNT16	Q9UBV4	365 aa		12.34	□□□□□ -0.43
CPNE1-222	ENST00000473373	GTF3C4	Q9UKN8	822 aa		12.34	□□□□□ -0.43
CPNE1-222	ENST00000473373	ANAPC1	Q9H1A4	1944 aa		12.34	□□□□□ -0.43
CPNE1-222	ENST00000473373	HELZ	P42694	1942 aa	Known RBP	12.33	□□□□□ -0.44
CPNE1-222	ENST00000473373	CFAP54	Q96N23	3096 aa		12.33	□□□□□ -0.44
CPNE1-222	ENST00000473373	PRR23A	A6NEV1	266 aa		12.33	□□□□□ -0.44
CPNE1-222	ENST00000473373	LRRIQ3	A6PVS8	624 aa	Predicted RBP	12.33	□□□□□ -0.44
CPNE1-222	ENST00000473373		A8MXQ7	604 aa		12.33	□□□□□ -0.44
CPNE1-222	ENST00000473373	ECI2	O75521	394 aa		12.33	□□□□□ -0.44
CPNE1-222	ENST00000473373	VNN2	O95498	520 aa		12.33	□□□□□ -0.44
CPNE1-222	ENST00000473373	CSH1	P0DML2	217 aa		12.33	□□□□□ -0.44
CPNE1-222	ENST00000473373	CSH2	P0DML3	217 aa		12.33	□□□□□ -0.44
CPNE1-222	ENST00000473373	ATIC	P31939	592 aa		12.33	□□□□□ -0.44
CPNE1-222	ENST00000473373	GNL1	P36915	607 aa	Predicted RBP	12.33	□□□□□ -0.44
CPNE1-222	ENST00000473373	GRIK1	P39086	918 aa		12.33	□□□□□ -0.44
CPNE1-222	ENST00000473373	CCR2	P41597	374 aa		12.33	□□□□□ -0.44
CPNE1-222	ENST00000473373	MYL6	P60660	151 aa		12.33	□□□□□ -0.44
CPNE1-222	ENST00000473373	SNW1	Q13573	536 aa	Known RBP	12.33	□□□□□ -0.44
CPNE1-222	ENST00000473373	SOWAHA	Q2M3V2	549 aa		12.33	□□□□□ -0.44
CPNE1-222	ENST00000473373	TANGO2	Q6ICL3	276 aa		12.33	□□□□□ -0.44
CPNE1-222	ENST00000473373	FRMD5	Q7Z6J6	570 aa		12.33	□□□□□ -0.44
CPNE1-222	ENST00000473373	LRRTM3	Q86VH5	581 aa		12.33	□□□□□ -0.44
CPNE1-222	ENST00000473373	OSTM1	Q86WC4	334 aa		12.33	□□□□□ -0.44
CPNE1-222	ENST00000473373	FAM186B	Q8IYM0	893 aa		12.33	□□□□□ -0.44
CPNE1-222	ENST00000473373	GUF1	Q8N442	669 aa	Known RBP	12.33	□□□□□ -0.44
CPNE1-222	ENST00000473373	SMARCD2	Q92925	531 aa		12.33	□□□□□ -0.44
CPNE1-222	ENST00000473373	ELSPBP1	Q96BH3	223 aa		12.33	□□□□□ -0.44
CPNE1-222	ENST00000473373	BORCS6	Q96GS4	357 aa		12.33	□□□□□ -0.44
CPNE1-222	ENST00000473373	RTP3	Q9BQQ7	232 aa		12.33	□□□□□ -0.44
CPNE1-222	ENST00000473373	MED10	Q9BTT4	135 aa		12.33	□□□□□ -0.44
CPNE1-222	ENST00000473373	TRMT61B	Q9BVS5	477 aa	Known RBP	12.33	□□□□□ -0.44
CPNE1-222	ENST00000473373	KCTD10	Q9H3F6	313 aa		12.33	□□□□□ -0.44
CPNE1-222	ENST00000473373	TBC1D17	Q9HA65	648 aa		12.33	□□□□□ -0.44
CPNE1-222	ENST00000473373	UXT	Q9UBK9	157 aa	Predicted RBP	12.33	□□□□□ -0.44
CPNE1-222	ENST00000473373	CDH9	Q9ULB4	789 aa		12.33	□□□□□ -0.44
CPNE1-222	ENST00000473373	MICAL2	O94851	1124 aa		12.32	□□□□□ -0.44
CPNE1-222	ENST00000473373	CST3	P01034	146 aa	Predicted RBP	12.32	□□□□□ -0.44
CPNE1-222	ENST00000473373	EPB41	P11171	864 aa	Known RBP	12.32	□□□□□ -0.44
CPNE1-222	ENST00000473373	ATF6	P18850	670 aa		12.32	□□□□□ -0.44
CPNE1-222	ENST00000473373	WARS	P23381	471 aa	Known RBP	12.32	□□□□□ -0.44
CPNE1-222	ENST00000473373	CYP2F1	P24903	491 aa		12.32	□□□□□ -0.44
CPNE1-222	ENST00000473373	GDI1	P31150	447 aa		12.32	□□□□□ -0.44
CPNE1-222	ENST00000473373	PSMC2	P35998	433 aa	Known RBP	12.32	□□□□□ -0.44
CPNE1-222	ENST00000473373	NBL1	P41271	181 aa		12.32	□□□□□ -0.44
CPNE1-222	ENST00000473373	CLCN5	P51795	746 aa		12.32	□□□□□ -0.44
CPNE1-222	ENST00000473373	VAMP7	P51809	220 aa		12.32	□□□□□ -0.44
CPNE1-222	ENST00000473373	CYP4F8	P98187	520 aa		12.32	□□□□□ -0.44
CPNE1-222	ENST00000473373	ADAM9	Q13443	819 aa		12.32	□□□□□ -0.44
CPNE1-222	ENST00000473373	NCOA4	Q13772	614 aa		12.32	□□□□□ -0.44
CPNE1-222	ENST00000473373	UBXN2B	Q14CS0	331 aa		12.32	□□□□□ -0.44
CPNE1-222	ENST00000473373	DDR2	Q16832	855 aa		12.32	□□□□□ -0.44
CPNE1-222	ENST00000473373	MDH1B	Q5I0G3	518 aa		12.32	□□□□□ -0.44
CPNE1-222	ENST00000473373	FAM78A	Q5JUQ0	283 aa		12.32	□□□□□ -0.44
CPNE1-222	ENST00000473373	SDHAF4	Q5VUM1	108 aa		12.32	□□□□□ -0.44
CPNE1-222	ENST00000473373	TCERG1L	Q5VWI1	586 aa		12.32	□□□□□ -0.44
CPNE1-222	ENST00000473373	GPIHBP1	Q8IV16	184 aa		12.32	□□□□□ -0.44
CPNE1-222	ENST00000473373	SLC9A9	Q8IVB4	645 aa		12.32	□□□□□ -0.44
CPNE1-222	ENST00000473373	SMYD4	Q8IYR2	804 aa	Predicted RBP	12.32	□□□□□ -0.44
CPNE1-222	ENST00000473373	FMR1NB	Q8N0W7	255 aa	Predicted RBP	12.32	□□□□□ -0.44
CPNE1-222	ENST00000473373	STKLD1	Q8NE28	680 aa		12.32	□□□□□ -0.44
CPNE1-222	ENST00000473373	SHKBP1	Q8TBC3	707 aa		12.32	□□□□□ -0.44
CPNE1-222	ENST00000473373	CSGALNACT1	Q8TDX6	532 aa		12.32	□□□□□ -0.44
CPNE1-222	ENST00000473373	PARD3B	Q8TEW8	1205 aa		12.32	□□□□□ -0.44
CPNE1-222	ENST00000473373	MRPS31	Q92665	395 aa	Known RBP	12.32	□□□□□ -0.44
CPNE1-222	ENST00000473373	E2F7	Q96AV8	911 aa		12.32	□□□□□ -0.44
CPNE1-222	ENST00000473373	ASB16	Q96NS5	453 aa		12.32	□□□□□ -0.44
CPNE1-222	ENST00000473373	DNAI2	Q9GZS0	605 aa		12.32	□□□□□ -0.44
CPNE1-222	ENST00000473373	DNAJC25	Q9H1X3	360 aa		12.32	□□□□□ -0.44
CPNE1-222	ENST00000473373	TRPC7	Q9HCX4	862 aa		12.32	□□□□□ -0.44
CPNE1-222	ENST00000473373	ZNF334	Q9HCZ1	680 aa	Predicted RBP	12.32	□□□□□ -0.44
CPNE1-222	ENST00000473373	UTP3	Q9NQZ2	479 aa	Known RBP eCLIP	12.32	□□□□□ -0.44
CPNE1-222	ENST00000473373	SLC2A4RG	Q9NR83	387 aa		12.32	□□□□□ -0.44
CPNE1-222	ENST00000473373	TMLHE	Q9NVH6	421 aa		12.32	□□□□□ -0.44
CPNE1-222	ENST00000473373	CIZ1	Q9ULV3	898 aa	Predicted RBP	12.32	□□□□□ -0.44
CPNE1-222	ENST00000473373	ATP8B3	O60423	1300 aa		12.32	□□□□□ -0.44
CPNE1-222	ENST00000473373	ZNF263	O14978	683 aa		12.31	□□□□□ -0.44
CPNE1-222	ENST00000473373	CETN3	O15182	167 aa		12.31	□□□□□ -0.44

Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms