RNA–Protein interactions for RNA: ENST00000473099.1

VPS13D-205, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 461 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-205ENST00000473099 MICAL2O94851 1124 aa13.59□□□□□ -0.23
VPS13D-205ENST00000473099 SLU7O95391 586 aaKnown RBP13.59□□□□□ -0.23
VPS13D-205ENST00000473099 SLC34A2O95436 690 aa13.59□□□□□ -0.23
VPS13D-205ENST00000473099 CALCAP01258 141 aa13.59□□□□□ -0.23
VPS13D-205ENST00000473099 CYP11A1P05108 521 aa13.59□□□□□ -0.23
VPS13D-205ENST00000473099 IBSPP21815 317 aaPredicted RBP13.59□□□□□ -0.23
VPS13D-205ENST00000473099 PCSK1P29120 753 aa13.59□□□□□ -0.23
VPS13D-205ENST00000473099 AFF1P51825 1210 aaKnown RBP13.59□□□□□ -0.23
VPS13D-205ENST00000473099 CCL23P55773 120 aa13.59□□□□□ -0.23
VPS13D-205ENST00000473099 AMPD2Q01433 879 aa13.59□□□□□ -0.23
VPS13D-205ENST00000473099 CKAP4Q07065 602 aaKnown RBP13.59□□□□□ -0.23
VPS13D-205ENST00000473099 MEI1Q5TIA1 1274 aa13.59□□□□□ -0.23
VPS13D-205ENST00000473099 PEX26Q7Z412 305 aa13.59□□□□□ -0.23
VPS13D-205ENST00000473099 ACOT1Q86TX2 421 aa13.59□□□□□ -0.23
VPS13D-205ENST00000473099 CEP112Q8N8E3 955 aa13.59□□□□□ -0.23
VPS13D-205ENST00000473099 C1orf131Q8NDD1 294 aaKnown RBP13.59□□□□□ -0.23
VPS13D-205ENST00000473099 MYRIPQ8NFW9 859 aa13.59□□□□□ -0.23
VPS13D-205ENST00000473099 IPO4Q8TEX9 1081 aaKnown RBP13.59□□□□□ -0.23
VPS13D-205ENST00000473099 SCLYQ96I15 445 aa13.59□□□□□ -0.23
VPS13D-205ENST00000473099 SUSD3Q96L08 255 aa13.59□□□□□ -0.23
VPS13D-205ENST00000473099 ZSWIM1Q9BR11 485 aa13.59□□□□□ -0.23
VPS13D-205ENST00000473099 C11orf70Q9BRQ4 267 aa13.59□□□□□ -0.23
VPS13D-205ENST00000473099 CYLDQ9NQC7 956 aa13.59□□□□□ -0.23
VPS13D-205ENST00000473099 RNF14Q9UBS8 474 aa13.59□□□□□ -0.23
VPS13D-205ENST00000473099 TSPAN16Q9UKR8 245 aa13.59□□□□□ -0.23
VPS13D-205ENST00000473099 SNX12Q9UMY4 172 aa13.59□□□□□ -0.23
VPS13D-205ENST00000473099 KIAA1671Q9BY89 1806 aa13.58□□□□□ -0.24
VPS13D-205ENST00000473099 ABHD14A-ACY1A0A1B0GW23 586 aa13.58□□□□□ -0.24
VPS13D-205ENST00000473099 CARNS1A5YM72 827 aa13.58□□□□□ -0.24
VPS13D-205ENST00000473099 MIF4GDA9UHW6 222 aaKnown RBP13.58□□□□□ -0.24
VPS13D-205ENST00000473099 M0QZQ0 153 aa13.58□□□□□ -0.24
VPS13D-205ENST00000473099 BUB1BO60566 1050 aaPredicted RBP13.58□□□□□ -0.24
VPS13D-205ENST00000473099 TIMP1P01033 207 aa13.58□□□□□ -0.24
VPS13D-205ENST00000473099 ATP1A1P05023 1023 aaKnown RBP13.58□□□□□ -0.24
VPS13D-205ENST00000473099 TYMPP19971 482 aa13.58□□□□□ -0.24
VPS13D-205ENST00000473099 BCAT1P54687 386 aa13.58□□□□□ -0.24
VPS13D-205ENST00000473099 SLC8A3P57103 927 aa13.58□□□□□ -0.24
VPS13D-205ENST00000473099 PTP4A2Q12974 167 aa13.58□□□□□ -0.24
VPS13D-205ENST00000473099 RPS6KA1Q15418 735 aa13.58□□□□□ -0.24
VPS13D-205ENST00000473099 LRRC26Q2I0M4 334 aa13.58□□□□□ -0.24
VPS13D-205ENST00000473099 PLEKHA7Q6IQ23 1121 aa13.58□□□□□ -0.24
VPS13D-205ENST00000473099 DENND1BQ6P3S1 775 aa13.58□□□□□ -0.24
VPS13D-205ENST00000473099 DNAAF5Q86Y56 855 aa13.58□□□□□ -0.24
VPS13D-205ENST00000473099 COLGALT2Q8IYK4 626 aa13.58□□□□□ -0.24
VPS13D-205ENST00000473099 B3GALNT2Q8NCR0 500 aa13.58□□□□□ -0.24
VPS13D-205ENST00000473099 MNS1Q8NEH6 495 aa13.58□□□□□ -0.24
VPS13D-205ENST00000473099 STK32AQ8WU08 396 aa13.58□□□□□ -0.24
VPS13D-205ENST00000473099 C18orf8Q96DM3 657 aa13.58□□□□□ -0.24
VPS13D-205ENST00000473099 RPGRIP1Q96KN7 1286 aa13.58□□□□□ -0.24
VPS13D-205ENST00000473099 OSGEPQ9NPF4 335 aa13.58□□□□□ -0.24
VPS13D-205ENST00000473099 TBC1D13Q9NVG8 400 aa13.58□□□□□ -0.24
VPS13D-205ENST00000473099 CDH9Q9ULB4 789 aa13.58□□□□□ -0.24
VPS13D-205ENST00000473099 ENC1O14682 589 aa13.57□□□□□ -0.24
VPS13D-205ENST00000473099 CFHP08603 1231 aa13.57□□□□□ -0.24
VPS13D-205ENST00000473099 FGFR1P11362 822 aa13.57□□□□□ -0.24
VPS13D-205ENST00000473099 RAG1P15918 1043 aa13.57□□□□□ -0.24
VPS13D-205ENST00000473099 RRM1P23921 792 aa13.57□□□□□ -0.24
VPS13D-205ENST00000473099 SLC1A1P43005 524 aa13.57□□□□□ -0.24
VPS13D-205ENST00000473099 GPD2P43304 727 aa13.57□□□□□ -0.24
VPS13D-205ENST00000473099 GABRB2P47870 512 aa13.57□□□□□ -0.24
VPS13D-205ENST00000473099 BST2Q10589 180 aaKnown RBP13.57□□□□□ -0.24
VPS13D-205ENST00000473099 ORC1Q13415 861 aa13.57□□□□□ -0.24
VPS13D-205ENST00000473099 ZNF268Q14587 947 aaPredicted RBP13.57□□□□□ -0.24
VPS13D-205ENST00000473099 GOLGA7BQ2TAP0 167 aa13.57□□□□□ -0.24
VPS13D-205ENST00000473099 PPP1R26Q5T8A7 1209 aaPredicted RBP13.57□□□□□ -0.24
VPS13D-205ENST00000473099 WSCD1Q658N2 575 aa13.57□□□□□ -0.24
VPS13D-205ENST00000473099 DNAJC24Q6P3W2 148 aa13.57□□□□□ -0.24
VPS13D-205ENST00000473099 MMS22LQ6ZRQ5 1243 aa13.57□□□□□ -0.24
VPS13D-205ENST00000473099 NT5DC3Q86UY8 548 aa13.57□□□□□ -0.24
VPS13D-205ENST00000473099 THEM5Q8N1Q8 247 aa13.57□□□□□ -0.24
VPS13D-205ENST00000473099 TMEM199Q8N511 208 aa13.57□□□□□ -0.24
VPS13D-205ENST00000473099 WDTC1Q8N5D0 677 aa13.57□□□□□ -0.24
VPS13D-205ENST00000473099 ANKRD52Q8NB46 1076 aa13.57□□□□□ -0.24
VPS13D-205ENST00000473099 C3orf20Q8ND61 904 aa13.57□□□□□ -0.24
VPS13D-205ENST00000473099 PBKQ96KB5 322 aa13.57□□□□□ -0.24
VPS13D-205ENST00000473099 TMEM175Q9BSA9 504 aa13.57□□□□□ -0.24
VPS13D-205ENST00000473099 COLEC11Q9BWP8 271 aa13.57□□□□□ -0.24
VPS13D-205ENST00000473099 TLR10Q9BXR5 811 aa13.57□□□□□ -0.24
VPS13D-205ENST00000473099 SYNCQ9H7C4 482 aa13.57□□□□□ -0.24
VPS13D-205ENST00000473099 ABCB6Q9NP58 842 aa13.57□□□□□ -0.24
VPS13D-205ENST00000473099 ANAPC7Q9UJX3 599 aa13.57□□□□□ -0.24
VPS13D-205ENST00000473099 PCDHB8Q9UN66 801 aa13.57□□□□□ -0.24
VPS13D-205ENST00000473099 COG5Q9UP83 839 aa13.57□□□□□ -0.24
VPS13D-205ENST00000473099 ZNF638Q14966 1978 aaKnown RBP13.57□□□□□ -0.24
VPS13D-205ENST00000473099 LOC101059915A0A1B0GWI6 518 aaPredicted RBP13.56□□□□□ -0.24
VPS13D-205ENST00000473099 MYO1FO00160 1098 aa13.56□□□□□ -0.24
VPS13D-205ENST00000473099 FTCDO95954 541 aa13.56□□□□□ -0.24
VPS13D-205ENST00000473099 PTPN1P18031 435 aaKnown RBP13.56□□□□□ -0.24
VPS13D-205ENST00000473099 GTF2F1P35269 517 aaKnown RBP eCLIP13.56□□□□□ -0.24
VPS13D-205ENST00000473099 ACADSBP45954 432 aa13.56□□□□□ -0.24
VPS13D-205ENST00000473099 PDCLQ13371 301 aa13.56□□□□□ -0.24
VPS13D-205ENST00000473099 MAPRE1Q15691 268 aaKnown RBP13.56□□□□□ -0.24
VPS13D-205ENST00000473099 CLUL1Q15846 466 aa13.56□□□□□ -0.24
VPS13D-205ENST00000473099 PKDCCQ504Y2 493 aa13.56□□□□□ -0.24
VPS13D-205ENST00000473099 TIGD5Q53EQ6 642 aa13.56□□□□□ -0.24
VPS13D-205ENST00000473099 MFSD5Q6N075 450 aa13.56□□□□□ -0.24
VPS13D-205ENST00000473099 DEFB128Q7Z7B8 93 aa13.56□□□□□ -0.24
VPS13D-205ENST00000473099 OSTM1Q86WC4 334 aa13.56□□□□□ -0.24
VPS13D-205ENST00000473099 ZDHHC17Q8IUH5 632 aa13.56□□□□□ -0.24
VPS13D-205ENST00000473099 CRIPAKQ8N1N5 446 aa13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms