RNA–Protein interactions for RNA: ENST00000471342.1

SF3A1-207, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 459 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-207ENST00000471342 SMOQ99835 787 aa10.54□□□□□ -0.72
SF3A1-207ENST00000471342 RHOBTB2Q9BYZ6 727 aa10.54□□□□□ -0.72
SF3A1-207ENST00000471342 CSNK1G1Q9HCP0 422 aa10.54□□□□□ -0.72
SF3A1-207ENST00000471342 DDX43Q9NXZ2 648 aaKnown RBP10.54□□□□□ -0.72
SF3A1-207ENST00000471342 GTF3C4Q9UKN8 822 aa10.54□□□□□ -0.72
SF3A1-207ENST00000471342 PCDHGC3Q9UN70 934 aa10.54□□□□□ -0.72
SF3A1-207ENST00000471342 WDR3Q9UNX4 943 aaKnown RBP eCLIP10.54□□□□□ -0.72
SF3A1-207ENST00000471342 LZTS1Q9Y250 596 aa10.54□□□□□ -0.72
SF3A1-207ENST00000471342 PCDHB4Q9Y5E5 795 aa10.54□□□□□ -0.72
SF3A1-207ENST00000471342 SSU72P8A0A1W2PR75 194 aa10.53□□□□□ -0.72
SF3A1-207ENST00000471342 WDR27A2RRH5 827 aa10.53□□□□□ -0.72
SF3A1-207ENST00000471342 C2orf71A6NGG8 1288 aa10.53□□□□□ -0.72
SF3A1-207ENST00000471342 SOWAHDA6NJG2 315 aa10.53□□□□□ -0.72
SF3A1-207ENST00000471342 HIDE1A8MVS5 230 aa10.53□□□□□ -0.72
SF3A1-207ENST00000471342 TNFRSF10BO14763 440 aa10.53□□□□□ -0.72
SF3A1-207ENST00000471342 SEC24AO95486 1093 aa10.53□□□□□ -0.72
SF3A1-207ENST00000471342 RB1P06400 928 aa10.53□□□□□ -0.72
SF3A1-207ENST00000471342 CNPP09543 421 aaKnown RBP10.53□□□□□ -0.72
SF3A1-207ENST00000471342 DNAJB2P25686 324 aa10.53□□□□□ -0.72
SF3A1-207ENST00000471342 ALDH7A1P49419 539 aaKnown RBP10.53□□□□□ -0.72
SF3A1-207ENST00000471342 PGFP49763 221 aa10.53□□□□□ -0.72
SF3A1-207ENST00000471342 PSMC1P62191 440 aaKnown RBP10.53□□□□□ -0.72
SF3A1-207ENST00000471342 ADGRE1Q14246 886 aa10.53□□□□□ -0.72
SF3A1-207ENST00000471342 CNGA2Q16280 664 aa10.53□□□□□ -0.72
SF3A1-207ENST00000471342 OVOS1Q6IE37 1185 aa10.53□□□□□ -0.72
SF3A1-207ENST00000471342 DSTYKQ6XUX3 929 aa10.53□□□□□ -0.72
SF3A1-207ENST00000471342 ADGRD2Q7Z7M1 963 aa10.53□□□□□ -0.72
SF3A1-207ENST00000471342 MRPL43Q8N983 215 aaKnown RBP10.53□□□□□ -0.72
SF3A1-207ENST00000471342 B3GALNT2Q8NCR0 500 aa10.53□□□□□ -0.72
SF3A1-207ENST00000471342 VN1R2Q8NFZ6 395 aa10.53□□□□□ -0.72
SF3A1-207ENST00000471342 SLC35F5Q8WV83 523 aa10.53□□□□□ -0.72
SF3A1-207ENST00000471342 POF1BQ8WVV4 589 aa10.53□□□□□ -0.72
SF3A1-207ENST00000471342 PCED1BQ96HM7 432 aa10.53□□□□□ -0.72
SF3A1-207ENST00000471342 TGS1Q96RS0 853 aaKnown RBP10.53□□□□□ -0.72
SF3A1-207ENST00000471342 MMS19Q96T76 1030 aa10.53□□□□□ -0.72
SF3A1-207ENST00000471342 HNRNPABQ99729 332 aaKnown RBP10.53□□□□□ -0.72
SF3A1-207ENST00000471342 TTPALQ9BTX7 342 aa10.53□□□□□ -0.72
SF3A1-207ENST00000471342 PLVAPQ9BX97 442 aa10.53□□□□□ -0.72
SF3A1-207ENST00000471342 PYCARDQ9ULZ3 195 aa10.53□□□□□ -0.72
SF3A1-207ENST00000471342 SF3B1O75533 1304 aaKnown RBP eCLIP10.53□□□□□ -0.72
SF3A1-207ENST00000471342 GBF1Q92538 1859 aa10.53□□□□□ -0.72
SF3A1-207ENST00000471342 PLXNA4Q9HCM2 1894 aa10.53□□□□□ -0.72
SF3A1-207ENST00000471342 TULP1O00294 542 aaPredicted RBP10.52□□□□□ -0.73
SF3A1-207ENST00000471342 TEX28O15482 410 aa10.52□□□□□ -0.73
SF3A1-207ENST00000471342 HUS1O60921 280 aa10.52□□□□□ -0.73
SF3A1-207ENST00000471342 MICAL2O94851 1124 aa10.52□□□□□ -0.73
SF3A1-207ENST00000471342 SERPING1P05155 500 aa10.52□□□□□ -0.73
SF3A1-207ENST00000471342 TPM2P07951 284 aa10.52□□□□□ -0.73
SF3A1-207ENST00000471342 VDRP11473 427 aa10.52□□□□□ -0.73
SF3A1-207ENST00000471342 ODC1P11926 461 aa10.52□□□□□ -0.73
SF3A1-207ENST00000471342 CCDC130P13994 396 aa10.52□□□□□ -0.73
SF3A1-207ENST00000471342 FERP16591 822 aa10.52□□□□□ -0.73
SF3A1-207ENST00000471342 EIF4A3P38919 411 aaKnown RBP10.52□□□□□ -0.73
SF3A1-207ENST00000471342 TNNC1P63316 161 aa10.52□□□□□ -0.73
SF3A1-207ENST00000471342 NOMO3P69849 1222 aa10.52□□□□□ -0.73
SF3A1-207ENST00000471342 CDR2Q01850 454 aa10.52□□□□□ -0.73
SF3A1-207ENST00000471342 YWHAHQ04917 246 aaPredicted RBP10.52□□□□□ -0.73
SF3A1-207ENST00000471342 CCDC173Q0VFZ6 552 aa10.52□□□□□ -0.73
SF3A1-207ENST00000471342 RAB33AQ14088 237 aa10.52□□□□□ -0.73
SF3A1-207ENST00000471342 USP41Q3LFD5 358 aa10.52□□□□□ -0.73
SF3A1-207ENST00000471342 SFMBT2Q5VUG0 894 aa10.52□□□□□ -0.73
SF3A1-207ENST00000471342 LLGL2Q6P1M3 1020 aa10.52□□□□□ -0.73
SF3A1-207ENST00000471342 RNF19BQ6ZMZ0 732 aa10.52□□□□□ -0.73
SF3A1-207ENST00000471342 VPS52Q8N1B4 723 aa10.52□□□□□ -0.73
SF3A1-207ENST00000471342 OR6B3Q8NGW1 331 aa10.52□□□□□ -0.73
SF3A1-207ENST00000471342 MYCBPAPQ8TBZ2 947 aa10.52□□□□□ -0.73
SF3A1-207ENST00000471342 SLC22A17Q8WUG5 538 aa10.52□□□□□ -0.73
SF3A1-207ENST00000471342 CYFIP2Q96F07 1278 aa10.52□□□□□ -0.73
SF3A1-207ENST00000471342 KLHL5Q96PQ7 755 aa10.52□□□□□ -0.73
SF3A1-207ENST00000471342 FAM193BQ96PV7 902 aaPredicted RBP10.52□□□□□ -0.73
SF3A1-207ENST00000471342 AGPAT1Q99943 283 aa10.52□□□□□ -0.73
SF3A1-207ENST00000471342 ZBED2Q9BTP6 218 aa10.52□□□□□ -0.73
SF3A1-207ENST00000471342 NT5C1AQ9BXI3 368 aa10.52□□□□□ -0.73
SF3A1-207ENST00000471342 ZNF518BQ9C0D4 1074 aa10.52□□□□□ -0.73
SF3A1-207ENST00000471342 ISCUQ9H1K1 167 aa10.52□□□□□ -0.73
SF3A1-207ENST00000471342 IL37Q9NZH6 218 aa10.52□□□□□ -0.73
SF3A1-207ENST00000471342 FNIP2Q9P278 1114 aa10.52□□□□□ -0.73
SF3A1-207ENST00000471342 SALL4Q9UJQ4 1053 aa10.52□□□□□ -0.73
SF3A1-207ENST00000471342 CDH9Q9ULB4 789 aa10.52□□□□□ -0.73
SF3A1-207ENST00000471342 TFR2Q9UP52 801 aa10.52□□□□□ -0.73
SF3A1-207ENST00000471342 ATG2AQ2TAZ0 1938 aa10.52□□□□□ -0.73
SF3A1-207ENST00000471342 NLRC5Q86WI3 1866 aa10.51□□□□□ -0.73
SF3A1-207ENST00000471342 A0A1W2PPC1 479 aa10.51□□□□□ -0.73
SF3A1-207ENST00000471342 MTMR11A4FU01 709 aa10.51□□□□□ -0.73
SF3A1-207ENST00000471342 A8MXQ7 604 aa10.51□□□□□ -0.73
SF3A1-207ENST00000471342 TPM3P06753 285 aa10.51□□□□□ -0.73
SF3A1-207ENST00000471342 CTNNB1P35222 781 aa10.51□□□□□ -0.73
SF3A1-207ENST00000471342 ARHGAP25P42331 645 aa10.51□□□□□ -0.73
SF3A1-207ENST00000471342 LHX1P48742 406 aa10.51□□□□□ -0.73
SF3A1-207ENST00000471342 GPR15P49685 360 aa10.51□□□□□ -0.73
SF3A1-207ENST00000471342 ROR1Q01973 937 aa10.51□□□□□ -0.73
SF3A1-207ENST00000471342 GPR17Q13304 367 aa10.51□□□□□ -0.73
SF3A1-207ENST00000471342 COL19A1Q14993 1142 aa10.51□□□□□ -0.73
SF3A1-207ENST00000471342 RAB41Q5JT25 222 aa10.51□□□□□ -0.73
SF3A1-207ENST00000471342 ARTNQ5T4W7 220 aa10.51□□□□□ -0.73
SF3A1-207ENST00000471342 TRNP1Q6NT89 227 aa10.51□□□□□ -0.73
SF3A1-207ENST00000471342 PMF1Q6P1K2 205 aa10.51□□□□□ -0.73
SF3A1-207ENST00000471342 CLEC20AQ6ZU45 233 aa10.51□□□□□ -0.73
SF3A1-207ENST00000471342 TOGARAM2Q6ZUX3 1019 aa10.51□□□□□ -0.73
SF3A1-207ENST00000471342 GPRIN1Q7Z2K8 1008 aa10.51□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms